RNA id: TU779521


Basic Information

Item Value
RNA id TU779521
length 2863
RNA type TUCP
GC content 0.44
exon number 3
gene id LOC110529590
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 21406192 ~ 21424564 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catgtctgtgtgtgcgcgtgtctgtgtctgtgtgcgagcgtgtctgtgtgtttgtgtttgtccgtgtgcttgccagtgtgtgcgtgtacgtgtgtgcgtgcgtgtgtgcgtgtgtgtgtgtctgtctctgtgtcccccagaggggagagatagagttTGAGGTGGTGTACGTGGCCCCGGAGGTGGACTCTGACGATGAGAACGTGGAGTATGAGGATGACAGCGGCCATCGCTACCGCCTCTACCTGGATGAGCTGGAGGAGGGGTCAGCCGCCAGCAGGAACAACGGCACAGCAGACTTGGCATCACTACAAGCCCTGGAAAAGATGTCCGTGGGTGACGGCCCAGAGAACGGAGACACAGGGATCTTCAGTGAGACGCCATCGGAGGAGACCCCGTCTAAGACTGCTGGGTCCGGAAAGAGCACCTCCTAGAGCGGCGGGGAGGATCTGGAGGAATGGGGAGGGGTgcagaggaggatggagaagagCTGAAAGACTGGACTGCACATGTATTTTTGTACTATACTCTATGAGATTTGAGAGACTGGACTGCATCTGAGTCCACTGGAGGATGTATGAGAGGAGAAATGGGGATAAATTCGACTCATCATTAAGTCGTCATGGAAACACACTCAAAGCTCTTTTGAATTCCTGTTACTATCTTTCTGCAACGGTGAGGAGCCAATGAGAGAAGACCACAGATTGAGGAGAAGATGTGGGTCTAGATGATTGAATGGATGGACTAAGTGGTATTTTTCTGTGTGTATAGTTACTGATCCTATTTGCCCCCACATTAAGACGACACTTCCTTACTGTGAGACTGCCCTGCTGGTAATGAATATTGTTTTACTAGGCTGAGGAAATCTTCTCCCTTCATAAATGTTGGCTTTTATTTATCTCTTACACATGTAGCTTGTGTAGAGGGGTTTCCCTCAACTGTAATGTTCATCTTCTACCACTGATTAGGATCTCAATGTTTACTCCCATGTCAAACCCTCAAGTGTTCAGAATATAGAGCAGACACATTCACCTATTGGATGTCAAAACAGAATGTACAGTCAGGGAAAGACTTGTCAGAATTCAAAGGATTTCAACTATTAGGGTGTGCCCTCTGTGTTTGATCAATGGTATCACAGAATGTTACCATAGTCCTCATTACACAACATTTTCATTTAAAGATGGGGCACTCTGAGCAATGCATCTTGTGTGCTACCTCGTTGTCTTCATACTGTTCAAAGTCCTTGCCGTTTACTCTGAGGTGCACACACACTGGCTAATGTTCTCTGAAAACAAGTTGTGTATGACAAAGTTACTGATAACTCTGGAAGTATTTCtttcacaaatatatatatatatatatatatatatattaccacaAGCTCCGTTGCCAGAAATTAGAAGTGCAATATCTTTAAACTCAACTAGGATTTCTCCTTTACCGCCTTTGTTCTTGTCCCTTTTCACGTAAAGTACATATCTTGCTTGTCCCTGAAGTTCCTTCGCTGTATTGTTTTCCCACCCTTCTCTATTACTGGTGTGCTGTGATCTTGTATCAGTGGCTGTGTTTTCAGACTCGTTAGGACCCAAAAGATGACTGACGGCCGTGTCGGCTGCACCGTATTCTGATATTAAGAGCTGTCAGAGGGTTATCAACCTGTCTGAGGGATGGGAGTTTCCAGCtttaatctatgaatttcacacaACCAAAAGGTTTGTGTGCATGCAAACAGGTTTTTATGCACTGAAGATCAATTCCAAAATATCCACAAACTATCATCTTTGAGACTATAAAAAGTTCTGTGtatactatataaatatattagcTGTTTTTAAACTTGAAATCTGTGCATTTCTGTAGATTCATATTGGAATTTCGCTACTGTAGTAGCTAGCATCTCTCTACTGTACTCATTACAAATGTACCCCCATACTGAGGGCTGAGGGGTTGAGGTGGTCATGATGACAACCTGCAGCCTTGTGTTCCAATCTTGACCTCATTCATAGCTAATCTGCAGCTActgtttatttaattttttatctacactaaacaaaaatgtaaatgcaatatgtaaagtgttggtctcatgtttcatgagctgaaataaaagatcctagaatttttccatatgcacaaaaagcttatttctctaaaaatgGTTTGCATCCCtattagtgaacatttctcctttgccaagatccatccacctgacaggtatggcatatcaagaagcggcaggaatgtccaccagagctgatgccagggacttgaatgttaatttctctaccataagccaccttcaaTGTCGTATTTGAGAATTTCACAGTACattcaaccagcctcacaaccccACGTGTAACtgcgccagcccaggacctccacatccggtttcttcacctgcgggatcgtctgagaccagccacctggacagctgatgaaactgagtatttatttctgtaataaagtccttttgtggggaaaaacaaattctgattggttgggcGTGGCTCCCAAATGGGTGGACCTAtcccctcccaggcccacccatggctgtgcccctgcccagtcatgtgaaatccatagattagggcctcagttatttatttcaattcactgatttccttatgaactgcaactcagtaaaatcagttaaaatgttgcatgttgcgtttatatttttgatcagtataAATTGCGCTTTGATCAAACTCAAATGCTCTTCATGAAGGACTTGTCCAAGCCAAGGACAGTTCCCTGCTTAACGTTAGTGAAATGACACACAGAGTGGCACTAGACAGCAGCATGTCACAGAGAATGTTCACATCGCTTGTTGACAGTGCTTCTGACTGAAGAAACAAAGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU779487 lncRNA upstream 15772 21402950 ~ 21403576 (+) True G684554
TU779473 lncRNA upstream 26444 21389871 ~ 21392904 (+) False G684548
TU779477 lncRNA upstream 26444 21389871 ~ 21392904 (+) True G684548
TU779471 lncRNA upstream 31131 21388003 ~ 21388217 (+) True G684547
TU779327 lncRNA upstream 229179 21187182 ~ 21190169 (+) True G684413
TU779874 lncRNA downstream 65147 21489539 ~ 21489980 (+) True G684860
TU779892 lncRNA downstream 75120 21499512 ~ 21500950 (+) True G684878
TU779893 lncRNA downstream 77038 21501430 ~ 21501894 (+) True G684879
TU779895 lncRNA downstream 79933 21504325 ~ 21504585 (+) True G684881
TU779906 lncRNA downstream 99411 21523803 ~ 21524079 (+) True G684892
XM_021611926.2 mRNA upstream 189238 21143069 ~ 21230110 (+) False LOC110529585
XM_021611924.2 mRNA upstream 189238 21154291 ~ 21230110 (+) True LOC110529585
XM_021611923.2 mRNA upstream 282523 21117379 ~ 21136825 (+) True mcm9
XM_036985005.1 mRNA upstream 303051 21010334 ~ 21116297 (+) False LOC110529583
XM_021614352.2 mRNA downstream 288768 21713160 ~ 21722182 (+) True LOC110531076
XM_021611947.2 mRNA downstream 347671 21772063 ~ 21774545 (+) True LOC110529595
XM_021611949.2 mRNA downstream 355478 21779870 ~ 21782714 (+) True LOC110529596
XM_021611950.2 mRNA downstream 364824 21789216 ~ 21816690 (+) True LOC110529597
XM_021611953.2 mRNA downstream 450007 21874399 ~ 21876744 (+) True LOC110529600
TU779216 other upstream 340477 21077070 ~ 21078871 (+) False G684314
TU778731 other upstream 711977 20707058 ~ 20707371 (+) True G683845
TU778611 other upstream 786449 20626950 ~ 20632899 (+) True G683757
TU778522 other upstream 855914 20562875 ~ 20563434 (+) True G683669
TU777286 other upstream 1689677 19728833 ~ 19729671 (+) True G682611
TU780275 other downstream 500725 21925117 ~ 21926280 (+) False G685215
TU780277 other downstream 500725 21925117 ~ 21926356 (+) False G685215
TU780265 other downstream 500892 21925284 ~ 21926229 (+) False G685215
TU780379 other downstream 659482 22083874 ~ 22084224 (+) True G685311
TU780597 other downstream 998666 22423058 ~ 22433035 (+) True LOC110529616

Expression Profile