RNA id: XM_021611936.2


Basic Information

Item Value
RNA id XM_021611936.2
length 2565
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC110529593
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 21499465 ~ 21504647 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCAGGCTCGTCCAGAGACACTTGAAAACCGCTGGCTGTGTAACGTCTTTACTTTCCCCCGCCACGCGTTCCCTGTCGCACTGACGTAGCGTTAAGAAGGCAGGACGCGCAGCGCGATTGGGATAGAAATGCAGCTCTCCAACGtcccaggttaatctctctccgTTTAGGAAATTACATCCCTACAATCTGCTTATTCTGTCAAGTTATTAACCGTGAGAATTCGCTTTTTTCGCCATGAGCTGCTTGGATGTTATGTATCAAGTGTATGGTCCACCACCTCAGCCTTATTTTTCCGCAGCGTATAGCCCTTATCATCACCAGAAATTGGCATTTTATTCCAAAATGCAAGAAGCGCAAGAGAGCGTCAGCGGGGGCAGCTCGTTCTCGAACCTCGCGGGTCCGACGATAAAGGAGGAGGACTGCGCGCGCGAGAAAGATCACCCTCCGGAGGCCGAGTACCTGAACTCGCGGTGCGTGCTCTTCACCTACTTCCAGGGGGACATCAGCTCAGTGGTGGACGAGCACTTCAGCCGGGCCCTCAACCAGCCCACCAGCTACGTCCCCGGGTCGGTCAGCAACAAGTCCGCACGAGATGGACCATTCCCGATGAGCCAGAGGAGTTTCCCTCCGTCCTTCTGGAACAGTGCGTACCAGCCCTCCTCCATGAGCAGTGCCTTAGGAGCCTCCCACTCAGAGATACCCTTCACTGGGGACCCTTACTCCTCTGCCTCCCTACATAGTCACCTCCACCATGCTACCCCAGAGCCCTGgcaccactcacaccaccaccaccaccaccacccctactcaCTTGGCGGGGCCATCGGCACCCAGGGCTCCACCTACCCTCGACCCAGCATGCACGAGGTGTATGGCACGCACTTTGACCCCCGCTACAGTTCTCTGCTGGTGCCCTCCGTCCGGCCGCACCGGCTCCCTCCATCCACTGTCCAAGGGCCGAGCGCCTCAACATGTGACATTGGGAAGAGTGAGCCAACCAGCTCGGCCTGGACCGGTACCTTCACCGGGGCAGGGGCAGACATCAGCCAGAGCATCGGCCTCAATGTAGATGCAGgtCTGCAGGCCCAGGATAAGAGCAAGGACTTGTACTGGTTTTAAAGCTCTGCTGCCCTCCAGGCCCAAGCTGGCCTCTGTGTTTCTCTGCACTGTGTGATATTGACAGACATTTTCTGTAACAGATTCTAATCTCACTTGCAGCTCGACGCTACACCCTCTGTGGCGGAAACATCCTCAGCTGAAATTACGCCATTGTGGATACCATCTGCTGGAAATGCAGTGCACAAGGGAGAGAATCTAAAACTGAGTCTCTCCTACTTAAGAGAAAGGAGGGCAGGACTTGCTGGACAGCATGCCAGAAATACTAAGTGGTGTGACTGACAACTTTTATCTGGCCAAGACTGAACGCATTCAACTCCTCCAAAGAGGACAGTTgttgaaaaataaaacaaatatggtGAATGTGTGAAACTGGAACATCAAAAATGAGATTTGACAAGAGCATAGTCAGAGACTGGACAAACACTATTTGCCATTGTTATTTTTCTATCCGTGAAAggagaggagcaagagagaggagcaTTCTCTAACATGACTGAAGTGAGCACTGGCTATTTGAAGCCACTTGACTCTATCTATATTGCTCCCCAGCAGCTGTCAACGACAACTGTTTCAGAACTCAACGGACACACACAATGGTAGTGTCACTGCACAGTATTTGACGGGGGCTCCGGACTTCATAAAAGGAGCATTTTGTCAAATCTGGACCCCGACCCACAGGGAACAACTGGTTTGACTGGTGATTTTGAGGGGGAAGGGTGGACAGGTGGTAGCAGAAGTGGACACACACAACTGTgctatgtatgtatgtctgtgtgcgATCTATGGGCAGCTCTATACatgtgtaggatcttaatttgatcaccctgttgcaggataactttttTCTAACTTGTAGCGTATTTgaagtttaaaaaggcttctgaaatttgaaatttccactttgaaatttcagagttgattttcccttatgaaaaatgtatcaatccctacactaatgtccattaattataatccacataataattcacatttcgtgttgctgcaggattattttcctgcttcaCCAattctggctcaaattaagatcctacatctgtgatAATGTTGTATTTAAGATTTGGATCTTTATAAACTTATTCCTCATTGTTTTTTCAGTCATCCCAGGTATATTGCAAAGTCAAAAGATTACCCATTGAATATTGTATTgtgaatatattaatatattgccttttaaagtattttttcttGATACAGTTCGGATGTAATGTCAATGTGTTGCCTGTAACTATAAAGCAACGGCACAATGTGATTAAAACGCAACTATAGCCTCTGATTGTTTAGGCGAACATGTACAGGGCAGATATGGGTGATCTTTAGAAAATACAATTTCATAGACAGTCCGATTGAAAACTATTATGTTTGATGATGTGTCAGTCTATTATTCTGGTTAATTTCTTCAATGATGTTATATTGTACAACATC

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU779878 lncRNA downstream 7539 21491709 ~ 21491926 (-) True G684864
TU779877 lncRNA downstream 7893 21491290 ~ 21491572 (-) True G684863
TU779851 lncRNA downstream 27639 21471615 ~ 21471826 (-) True G684837
TU779779 lncRNA downstream 74926 21422922 ~ 21424539 (-) True G684767
TU779778 lncRNA downstream 75027 21421794 ~ 21424438 (-) False G684767
TU780037 lncRNA upstream 15478 21520123 ~ 21520354 (-) True G685004
TU780039 lncRNA upstream 17100 21521745 ~ 21522034 (-) True G685006
TU780046 lncRNA upstream 25516 21530161 ~ 21530509 (-) True G685013
TU780050 lncRNA upstream 31412 21536057 ~ 21536342 (-) True G685017
TU780051 lncRNA upstream 31935 21536580 ~ 21536886 (-) True G685018
XM_021611935.2 mRNA downstream 30171 21425619 ~ 21469294 (-) True LOC110529592
XM_021611932.2 mRNA downstream 93394 21401943 ~ 21406071 (-) False LOC110529589
XM_021611931.2 mRNA downstream 98355 21392338 ~ 21401110 (-) True LOC110529588
XM_021611930.2 mRNA downstream 113862 21247152 ~ 21385603 (-) True LOC110529587
NM_001197208.2 mRNA downstream 258315 21231292 ~ 21241150 (-) True si:dkeyp-114g9.1
XM_021611330.2 mRNA upstream 35237 21539882 ~ 21545761 (-) False LOC110529205
trnal-cag-4 mRNA upstream 49413 21554058 ~ 21554140 (-) True trnal-cag-4
XM_021611939.2 mRNA upstream 54313 21558958 ~ 21688056 (-) False afdna
XM_021611943.2 mRNA upstream 54313 21558958 ~ 21688056 (-) False afdna
XM_021611946.2 mRNA upstream 54313 21558958 ~ 21688056 (-) False afdna
TU779858 other downstream 20262 21478766 ~ 21479203 (-) True G684844
TU776244 other downstream 2707328 18791230 ~ 18792137 (-) True G681659
TU773944 other downstream 4384937 17113543 ~ 17114528 (-) True G679471
TU773640 other downstream 4869206 16625090 ~ 16630259 (-) False G679210
TU773642 other downstream 4869206 16625090 ~ 16630259 (-) True G679210
TU780899 other upstream 415782 21920427 ~ 21924908 (-) False LOC110529207
TU780900 other upstream 415782 21920427 ~ 21924908 (-) True LOC110529207
TU781111 other upstream 654385 22159030 ~ 22161042 (-) False G685953
TU783285 other upstream 2112262 23616907 ~ 23621246 (-) True LOC110529643
TU783300 other upstream 2130664 23635309 ~ 23637408 (-) True G687890

Expression Profile

XM_021611936.2 Expression in all Baseline Samples

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XM_021611936.2 Expression in each Bioproject

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XM_021611936.2 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 14.
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