RNA id: trnal-cag-4


Basic Information

Item Value
RNA id trnal-cag-4
length 83
RNA type mRNA
GC content 0.60
exon number 1
gene id trnal-cag-4
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 21554058 ~ 21554140 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcaggatggccgagcggtctaaggcgctgcgttcaggtcgcagtctcccctggaggcgtgggttcgaatcccacttctgaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU780057 lncRNA downstream 9147 21544691 ~ 21544911 (-) True LOC110529205
TU780055 lncRNA downstream 13458 21540384 ~ 21540600 (-) False LOC110529205
TU780054 lncRNA downstream 15743 21538116 ~ 21538315 (-) True G685021
TU780053 lncRNA downstream 15995 21537726 ~ 21538063 (-) True G685020
TU780051 lncRNA downstream 17172 21536580 ~ 21536886 (-) True G685018
TU780082 lncRNA upstream 71087 21625227 ~ 21625697 (-) True G685049
TU780123 lncRNA upstream 144525 21698665 ~ 21698916 (-) True G685087
TU780134 lncRNA upstream 152768 21706908 ~ 21707110 (-) True G685098
TU780810 lncRNA upstream 161147 21715287 ~ 21722130 (-) True G685696
TU780820 lncRNA upstream 173348 21727488 ~ 21727799 (-) True G685705
XM_021611330.2 mRNA downstream 8297 21539882 ~ 21545761 (-) False LOC110529205
XM_021611937.2 mRNA downstream 49411 21499465 ~ 21504647 (-) True LOC110529593
XM_021611936.2 mRNA downstream 49413 21499465 ~ 21504645 (-) False LOC110529593
XM_021611935.2 mRNA downstream 84764 21425619 ~ 21469294 (-) True LOC110529592
XM_021611932.2 mRNA downstream 147987 21401943 ~ 21406071 (-) False LOC110529589
XM_021611939.2 mRNA upstream 4818 21558958 ~ 21688056 (-) False afdna
XM_021611943.2 mRNA upstream 4818 21558958 ~ 21688056 (-) False afdna
XM_021611946.2 mRNA upstream 4818 21558958 ~ 21688056 (-) False afdna
XM_036985024.1 mRNA upstream 4818 21558958 ~ 21688056 (-) False afdna
XM_021611940.2 mRNA upstream 4818 21558958 ~ 21688057 (-) False afdna
TU779858 other downstream 74855 21478766 ~ 21479203 (-) True G684844
TU776244 other downstream 2761921 18791230 ~ 18792137 (-) True G681659
TU773944 other downstream 4439530 17113543 ~ 17114528 (-) True G679471
TU773640 other downstream 4923799 16625090 ~ 16630259 (-) False G679210
TU780899 other upstream 366287 21920427 ~ 21924908 (-) False LOC110529207
TU780900 other upstream 366287 21920427 ~ 21924908 (-) True LOC110529207
TU781111 other upstream 604890 22159030 ~ 22161042 (-) False G685953
TU783285 other upstream 2062767 23616907 ~ 23621246 (-) True LOC110529643
TU783300 other upstream 2081169 23635309 ~ 23637408 (-) True G687890