RNA id: XM_021611941.2


Basic Information

Item Value
RNA id XM_021611941.2
length 7221
RNA type mRNA
GC content 0.54
exon number 34
gene id afdna
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 21558958 ~ 21688064 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATCACTGTTGTGCTCGTGCAGGGCAAATTGTAAGGGCGTGAGCGCGCGCTGAAATAGTCCCATTTGCTTCCCTGGGAGAGAGAACCGGGTGCGGTAAGCGAGAGAGGAGAACGCGGAAACAGCAGGAGCGGTCCGCAAGAGGTACAGCTACCGGTGACAGCGAAACACTCGAACGGTATAGAACCCAGATCCTGGGTGCATTTTTTTCGTGAAGTTATCGGATCAGaggctttttttttgttgtatcgCTGTAAGGGGATTTTTCTTCAGTAGAGAGTCATTCGGGATTCAGAATgtcggggagcagggaggaggagcgGCGGAAACTAGCCGATATCATTAACCACTGGAACGCCAACCGGCTTGACCTGTTCGAGATCAGCCAACCCACCGAGgaCTTGGAGTTCCACGGCGTGATGCGTTTCTACTTCCAGGACCGCGTAGCAGGGAACTTTGCCACCAAGTGTATCCGCGTGTCCTCCACGGCCACCACTCAGGATGTCATTGAGACGCTGGCCGAGAAGTTCCGGCCCGACATGAGGATGCTCTCCTCGCCCAAATACTCCCTCTACGAGGTCCATGTCAGCGGGGAAGAACGGAAGCTGGACCTGGATGAGAAGCCACTGGTTGTGCAGCTCAACTGGAACAAAGACGACCGCGAGGGACGTTTCGTCCTCAAGAATGAGAACGACATCATCCCCAAGAAGGCGCAGAGCAACGGgccggagagggagaaggagggagtaaTCCAGAACTTCAAACGGACACTGtccaagaaagagaagaagaaggagaagaaacgAGAGAAGGAGGCTCACATTTCTGACGGAGATGAGCAAGCACTGAGCAGAGAAGATGGTGAGAACTCCAGACTGGCGGCGGAGGTGTACAAGGACATGCCGGAGAACAGCTTCACCCGGACCATCTCCAACCCTGAGGTGGTGATGAAGAGGAGGCGGCAGCAGAAACTGGAGAAGAGGATGCAGGAGTTCCGCAGCAGCGACGGCAGGCCAGACTCGGgGGGGACGTTGAGGATCTATGCAGACAGTCTGAAACCCAATATCCCCTATAAGACCATCTTGCTGTCCACGACAGACATGGCAGACTTTGCTGTGGTGGAGGCCCTGGAGAAGTACGGCCTGGAGAAGGAGAACCCCCGGGAGTACTGCATTGCCAGGCACACAGATGACAAGTCTGGGAAGGAGATCATCCTGGATGATACAGAGTGTCCTCTTCAGATCTTCAGAGACTGGCCCAACGACAGAGGAGACCTAGTATTCCAGCTGAAGAAGAGACCTCCAGACTACGTGCCAAAGAAGGGTCGCAAGCCAGAGGACAAGGGCCCCAGGGGGAAGGGCATGGACATGTCCCTGCATGGGTCTCTACCCCCAGAGAAACTGCCTTACCTGGTGGAGCTCAGCCCAGGGAGGGGGAATCACTATGGCTACTACACCTATCGGCATCACGAAGACGGCTCAGACTCCAGGGACAAACCGAAACTCTACCGCCTGCAGCACAGTGTCACCGAGGTGGGCTCAGACACTACAGACGACGGCTCCATCCAGctgttTGGTCCAGGTATCCTGCCCCACCACTGTAAACTGATGCATACGGAGGGTTTGGTGACCGTGACACCACACAGTCTGGAGGCTGAGACTTACGTGGACGGCCAGCGTGTCACCGAGACCACCGTGCTGCGAAGCGGAGCCACACTGCAGTTCGGCGCCTCCCACGTGTTCAAGTTTGTGGACCCCAGCTACGACCACAGCATGGGCAAGGGAGGGCCCGGACAAATGATGAGAGGCAGGCACAAGTCAGGAAGTGTTCCTGAGACGACCTTTGACCTGCAAGGGGACCTCCACAGTGGGACGGCCCTCTCCACCAGCAAGAGCTCAGGGAAGCTGGAAATGGAGCGTTCATCCAACGGCAGCGAGAGAGGCATGGTCAAACCCATGATCCGCGGGGAGCAGCAGGACagcagGTCCCAGGACAGCCTGAGCCCAGAAGTGACGCTGCCGGCCAGCATCGAGTTCAGGGACAACTCCGAAGATACCTTCCTGACGGCCATCATCAACTACACCAACAGCTCCACGGTGCACTTCAAGCTGTCCCCCACCTACGTGTTGTACATGACCTGTCGCTACGTCATGTCCAGCCACTACCGGCCCGACATCGGCCCCTCGGAGCGCACCCACAAAGTCATAGCCATCGTCAACAAGATGGTGAGCATGATGGAAGGAGTCATCCAGGAGATTCCTGAAGCGGACCAGAAGCAGAAGAACATTGCGGGGGCCCTGGCTTTCTGGATGGCCAATGCCTCAGAGCTGCTCAACTTCATCAAGCAGGACAAGGATCTGTCGCGCATCACACTGGACGCCCAGGACGTGCTGGCACACCTCGTCCAGATGGCCTTCAAGTACCTGGTCCAGTGTCTGCAGTCTGACCTGAGTAACTACATGCCTGCCTTCCTGGACGACCCAGAGGAACAGAACCCTCAAAGGCCCAAAATAGAGGATGTTTTGCACACCCTGACGGGCGCCATGTCGCTGCTGCGTCGTTGCCGTGTCAACGCGGCGCTGACCATCCAGCTGTTCTCCCAGCTCTTCCACTTCATCAACATGTGGCTGTTCAACAAGCTGGTGATGGAGGCCGACTCTGGACTGTGTTCACACTACTGGGGCGCCATCCTCCGCCAGCAGCTCAGCCACATCGAGGCCTGGGCAGAGAAACAGGGCCTGGAGCTGGCTGCTGACTGCCACCTCAGTCGCATCGTACAGGCTACGACTCTTCTCACCATGGACAAGTACTCCATGCAGGACGTGCAGAACATCCACAACACCTGCTTCAAGCTGAACTCCCTGCAGCTCAACGCCCTCATGACCAACTACCACTGTGCTCCCGACGAGCCTTACATCCCCCCAGAGCTTATAGACCACGTGGTTGCCGTGGCGGAGAACACAGCAGATGAGCTGGCTCGTAGCGACGGACGAGAGGTCCAGCTAGAGGAGGACCCTGACCTGCAGCTGCCCTTCCTGCTGCCCGAGGACGGCTACTCCTGCGACGTTGTGAGGAACATTCCCAACGGATTCCAGGAGTTCCTGGACCCCCTTTGTCAGAGAGGATTCTGTCGGCTAACCCCTCACCCGCGCTCCCCTGGGACCTGGACCATCCACTTTGAAGGAGTCGACTGCGACAGCCACTTCTCTGCAGACAACTCAGACCTGCAAATGCGGAAGGAACCGGAAGTTGTGACGGTCACCCTGAAGAAGCACAATGGCATGGGCCTCAGCATTGTGGCTGCCAAGGGTGCTGGGCAGGACAAGCTCGGGATCTACATCAAGTCTGTTGTGAAGGGAGGCGCGGCTGACATGgACGGGCGTCTGGCTGCAGGGGACCAGCTGCTGAGTGTGGACGGCCGCAGCTTGGTGGGCCTTTCCCAGGAGAGGGCTGCGGAGTTGATGACGAGGACAGGCTCTGTGGTGACACTGGAGGTGGCCAAACAGGGAGCCATCTACCACGGCCTGGCCACGCTCCTCAACCAGCCTTCTCCTATGATGCCCAGAGcgtCGCAGGGAGGGCGTGACAAGAATGGTAAACTGAGACCAAAGAGCGAAGGCTTTGAACTGTACAACAACTCGGTCCAGAACGGCTCTCCAGAGAGCCCCCAGGCCGACTGGCAGGCCTACCCAGAACCAAAGAAGATGAGCGGGGAGGAGAGGCTACTGAAGAACCGGGCCGACCACCGCTCCAGCCCCAACGTGGCCAACCAGAGCCAGAGTCCGGGAGGGAAGGCCGTCTACACACGAGGACCTGGGACCAAGATCACCTCTGTCTCCACGGGCAACCTGTGTGTTGACGACGagccctctcctccccatccggAGGCCTATCCTATTCCCACTCAGACCTACCCCAGGGAATACTTCACCATCCCAGCCTCCAAGTCTACGAACCGGATGGACTCGGCCCCAGGACAGATATACGCTGACGACAGGGGTCCTCCCGGCCCCATGGAAGACCACCACCACAACAGCATAGCTATGCAGCGGGTGGACCACTCTCAGGAGGAGCTGTGTGACCTCCCAGGGGGCTACCCTCCAACCGGCCTGCGTCCTGAGGACTTGGTCCACCTgcaccagcagcagcagagagaggcTGACTACCAGCGGGGCAGTGGGGAACACTGGGTCAACCACCACCAGGTCTCCTCCTCTGTGGAGTCCTCCACCTCCAGCCAGGAGCACCTCAACtactcctcgtcctcctccaacAAGACCCAGAGCAACCACAAGAGTGGCCCGGGACGCTGGAAGACCCCCGGCCCCATCGCTCCCCACCCAGGCCCCGTGGCCCAGTCCACACGCACggacctccctccccctccaccgcCCCCTCCCCCCGTACACTACCAGGACTTTGAGCTCCAGCCCGACCTGCCcctgccccctcctccctcaGCCACCCAGCAGCAGGCCGCAGCCGCCGCAGCCGACCGCAAGAAGCGCGAGGAGCAGCAGCGCTGGTATGAGAAGGAGAAGGCCcggttagaggaggagagggagaggaagaggagggagcaggagaggaagCTGGGACAGGTCCGTAACCCAGCTGTGCCTGTAGCCCACAACAACAACCAACACGGGGGCACACTCCCCCCTCCCACACAGCACCAGCAGATGCCCCCTCCCCGGTCCCCCATGCAGCAGGTGCCCcatccctacccccccccccagggccaacagcaggcccagcagcagcagcccccCAGGCCAGAGAAACTGTCCACCCTGCCCAGAGCGGGCACCCTGCCCCCTCAGGGTAACCCAATGGACACCGTGATCAGAGAGCTGCTCCCCCAGCAGCAGCCCCGCACCATCGAGCGCCGGgacctacagtacatcaccatCAGCAAGGAGGAGCTGTCTTCCAGCGACAGCCTGTCCCCAGACCCCTGGAAGAGGGACGCCCGGGAGAAGCtggagaagcagcagcagctgcaCATCGTAGATCTGCTGGACAGGGAGATCCAGGACCTGCAGGCCAAGCCGGAGCGTACGGCCGAGGAGAGCGACCGGCTCAGGAAGTTGATGCTGGAGTGGCAGTTCCAGAAGAGACTGCAGGAGTCCAAGCAGAGtgatgaggaagatgaggaggatgaCGACGAGGACGTGGACACCATGATGATCATGCAGCGGCTGGAGGCAGAGAAGAGAGCAAGGttGCAGGACGAGGAGCGGCGGAGGAAGCAACAGCTGGAGGAGATCCGTAAGCGCGAAGCGGAGGACCGGGccaaacaggaggaggagagacgctggagagaggaggagagggccagACGAGAGGTCGATGAGAAGaggaggcaggaggaggagtaCTACACACGTCTGGAGGAAGGGCGGCGCCGGCAGCACGAGGAGGCCGAGCGCAAGCTGCTGACGCCTGACGAGCCTGGATTTCATTCATACACTGGAAACACAACCGGGCTTGTAGGATCAGGAGAAGTTTACAAGGACCCGCGAGAAAAGTGGACGAAAGGTGGTCAAGAACAGGAAAACACTTTAAGTGAAGGAGCCCCGGAGAGTATGACATTCAAGGAGCGCCAGCGGCTTTTTTCCCAAGGGAAGGAAGTATCCAACAAAGTCAAGGCCTCGCGAAAACTCATGGAGCTGGAAAATGAACTCAACACAAAGCAGTAGACAAGTAGCCTTAGCAAGAAAAATTGACCGCCAGGCCCCGACTGAGCaatgggaaagagagacaggttTTGTTTCCCAGTGACTctgcttttttgttgtttttattgAACAACATACATTACATACAATTTAGACGTATCGTTGCAATAGGTGAGACATTTATTTGCTTAATTTCCCTCTTAAACTATCAGATATTATAAtaaagcactgtaaaaaaaataataatacataacaAAAATGAATTATACTACTAAGACAAATTTGAAATCACATGAAGGGGAATATATTTTTGTTTGTAAAATGGTTCTTGGGTTAAGGGATGAAAAAGTTTTGTTCATTTAAACGATTTTAATAGCTTAATGTAATGTGGAATATTTTATGATGTTATTTTATGCTCTTTCTGCATTACATATTTTCACACTTTTAAATAAATGCCCAGGCTTACCAGACCAATCTTTTAAGTTGAACTTCTTTCTATACTCATTGATTCAAATGGAGTAAGTTGTCCATTCTGGTTTGTGATACACTGTATTATTCATTCCTTAGAATGTGGCTTTAGTTTTGATCCAGGCATCACTGGAAGAGGATATGTCTTCACTATGACTTCCACATATATAAACTGGTTTACTGGGGGTCCACCTGAGTGCACGCCCACACTGTAAatatctctctccttccaaaCATAACTCTCAATTCTTAATAGTAACAGCTCTCATTTGGTTTTCATCTTCAGAAATGGACGGTTCAGAGTTTATCCAACAGGGCATTTTATACAAGTGTGACGTAGGAAATTGAGATAAGGAACTCCTTCCTACCTTTTGGTTCTCACTGTAAAtttgggaagggggggggggggggtcttatgttttctattccccccccccccccccccccccacacacactttttAGTATTGATTTTCTTTGTTTGAATTTAACAGTAATTTGCCGAGTTGTGAAATTTGACCAGTTATATACATTGCCAGTATGCGGAAAGTGGAAGCGTACCATGATGGAAAATTACTTCATTTTCAGTTCAAATGATAATAAAAATCCAAAGTAAAAACCTTGTTTTGTTTTAACAGGTATTTATTTGAACCTTATGTAATGTACTTGCACAGATTTTGTTTATTTAAAATGCTTGAGCATTCGGTTAAATCGATACAAACAAACATTGAATACATTTGGGACCTATAGGCTACTGTAGGTAAATGCTGTTTTAAGGATTTGGGCAGAATGCTATTTACATGAAGTACATCTCTTCATTCACAGCTGTTTGAGAGACTCCATCTTGTGTGtaaatatgatttattttttttcaGAACATGGGCCAGATTTGACTTTGTTAATGTTCATTATCCATAAAGTAACGGTATCAATATCCTGTTTCAGCTTTAAAGATGTTAACCGACATGTATACAAATGTATTCATGTTTCTCATTTTAGGTAACACATTTGAATCATTTAAATTGTTTCATGATAGCCTTTTGTAAATCATTAATAAATACAGATTTTACAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU780057 lncRNA downstream 14047 21544691 ~ 21544911 (-) True LOC110529205
TU780055 lncRNA downstream 18358 21540384 ~ 21540600 (-) False LOC110529205
TU780054 lncRNA downstream 20643 21538116 ~ 21538315 (-) True G685021
TU780053 lncRNA downstream 20895 21537726 ~ 21538063 (-) True G685020
TU780051 lncRNA downstream 22072 21536580 ~ 21536886 (-) True G685018
TU780123 lncRNA upstream 10608 21698665 ~ 21698916 (-) True G685087
TU780134 lncRNA upstream 18851 21706908 ~ 21707110 (-) True G685098
TU780810 lncRNA upstream 27230 21715287 ~ 21722130 (-) True G685696
TU780820 lncRNA upstream 39431 21727488 ~ 21727799 (-) True G685705
TU780821 lncRNA upstream 39874 21727931 ~ 21728266 (-) True G685706
trnal-cag-4 mRNA downstream 4818 21554058 ~ 21554140 (-) True trnal-cag-4
XM_021611330.2 mRNA downstream 13197 21539882 ~ 21545761 (-) False LOC110529205
XM_021611937.2 mRNA downstream 54311 21499465 ~ 21504647 (-) True LOC110529593
XM_021611936.2 mRNA downstream 54313 21499465 ~ 21504645 (-) False LOC110529593
XM_021611935.2 mRNA downstream 89664 21425619 ~ 21469294 (-) True LOC110529592
XM_021611951.2 mRNA upstream 128655 21816712 ~ 21822446 (-) True LOC110529598
XM_021611952.2 mRNA upstream 144471 21832528 ~ 21872461 (-) False LOC110529599
XM_036985028.1 mRNA upstream 144471 21832528 ~ 21872462 (-) True LOC110529599
XM_036985029.1 mRNA upstream 199916 21887973 ~ 21905014 (-) False ttc13
XM_021611955.2 mRNA upstream 199916 21887973 ~ 21905043 (-) False ttc13
TU779858 other downstream 79755 21478766 ~ 21479203 (-) True G684844
TU776244 other downstream 2766821 18791230 ~ 18792137 (-) True G681659
TU773944 other downstream 4444430 17113543 ~ 17114528 (-) True G679471
TU773640 other downstream 4928699 16625090 ~ 16630259 (-) False G679210
TU780899 other upstream 232370 21920427 ~ 21924908 (-) False LOC110529207
TU780900 other upstream 232370 21920427 ~ 21924908 (-) True LOC110529207
TU781111 other upstream 470973 22159030 ~ 22161042 (-) False G685953
TU783285 other upstream 1928850 23616907 ~ 23621246 (-) True LOC110529643
TU783300 other upstream 1947252 23635309 ~ 23637408 (-) True G687890

Expression Profile