RNA id: XM_021614352.2


Basic Information

Item Value
RNA id XM_021614352.2
length 1894
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC110531076
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 21713160 ~ 21722182 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCTTTGACAACCGTCCAGTGGAGTTGTAATCTGGAATATATAGGTATTCACGTTGCAGAAATGATAGACCGAAATATGAAAAATGTTCTGGTTGTATCCACTGGATTTTTATCTCTGTTCACAGCGTATGGAGGACTTCAGAGTTTACAGAGCAGTCTCAATGCCGAGGATGGGATGGGGGTGACATCTCTCAGTGTTATCTATGCCTCCATCATCCTGTCATCCATGTTCCTAACACCCACTCTCATCAAAAACCTGGGCTGCAAATGGACTATTGTTGTCGGCATGGGCTGCTATGTGACCTATTCAATTGGGAACCTCTACCCAGGATGGTACACTCTGATCCCCACCTCTGTGATCCTGGGTATGGGAGGTTCTCCACTATGGTCAGCCAAGTGTACCCTTCTCACCATCTGTGGCAACCTGCAGGCCCCTAAAGAAAACAAGGCAGCAGCGGATGTTATCAATAAGTACTTTGGCATATTTTTCTTGATATTCCAGTCTTCGGCTGTATGGGGAAACCTCATGTCGTCGTTGATATTTGGTTCAGATACAGATATACCTGACATCTCTGAGGAAGATCTACAATATTGTGGTGCAGGTGTGTGCATTGATATCAATGTAAACTCCACGACCAAAAGACCAGCACAAGAATTAGTTTGGACACTAGTCGGCTGCTATATTGGGGTGGGTGTGCTGGCCATGACCATAGTGGCAGTATTTCTGGATAACATAGACAGAGATCAGGCCCAGGAGTTCCGAGGGAACAGAGAACCATTCTGGAGCACCTTCCTGGCCACGTTTACACTCCTGAAAGACAAGAGACTCATCATTCTCATCCCTTTGTCCATGTACAGTGGCTTTGAGCAGAGTTTCCTCTCCGGTGAATACACAAAGAACTATGTGACCTGTTCATTAGGAATCCATTACGTCGGATATGCGATGATATGTTTTGGAGCCACAAATTCGTTATGTTCCTTTATGTTTGGGAGGTTGGCAGAATACACTGGAAGAGCCCCACTGTTTTGCTTGGCTGCGGCGAACAACTTTGCCTGTATCATGGCCCTGTTGTTCTGGAGGCCTCACCCAGACCAGCTGCCAGTGTTCTTTGTGTTTCCTGCTCTCTGGGGCATGGCAGATGCGGTATGGCAGGCACAAACCAACTCACTGTATGGGGTTCTCTTCCCCAGACAAAAAGAGGCAGCGTTTGCTAACTGCTGTATGTGGGAGTCCCTGGGGTTCGTGATAGCCTTTGCCTACAGTACCTTCATCTGTCTAGACACCAAGATCTACATCCTCCTTGGAGTTCTGATCCTCTCCATGGTTACCTGTTTGTGGGCAGAGTACCAAGAACACAACAATCCTACACTTCCGGTGGAGGAGGGAGTATATGACAAAGACTATAAAAAGGACACAGACCAATACACAGACTACTCAAAAAACATACATCACATCATTGCTCAGACCAGCTTGTAGACAATATGTGGATTTGATATGTAGACTTATGCAACAGGTGAGTCTAATCCTGaacgctgattggttaaaaccgcattccagccggtgtctattccacaagttaccaccagctaaatctatgacgttaaaatacCTTTTTACTCTGTttcatctgactgtgcaatccactgtctcatcagcccagccaggcaatttaaacttgatctccactataaaaagcatctagacattatctcacattttttAGACTAACATTAAGTTTTAGTGCAAGGATGAAATACTATGAATTAATCAAAATAACATTTCATGAAAATACAGTgccagtcgaaagtttggacacacctactcattcaagggcttttctttattttcattattttctacattgtagaataatagtgaagacatcaaaactat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU780120 lncRNA upstream 18058 21694872 ~ 21695102 (+) True G685084
TU780114 lncRNA upstream 21568 21691284 ~ 21691592 (+) True G685078
TU779940 lncRNA upstream 129767 21582999 ~ 21583393 (+) True G684926
TU779936 lncRNA upstream 148347 21560823 ~ 21564813 (+) True G684922
TU779934 lncRNA upstream 152533 21559634 ~ 21560627 (+) True G684920
TU780149 lncRNA downstream 8584 21730766 ~ 21731008 (+) True G685112
TU780153 lncRNA downstream 26330 21748512 ~ 21749034 (+) True G685116
TU780198 lncRNA downstream 100611 21822793 ~ 21823017 (+) True G685160
TU780200 lncRNA downstream 101380 21823562 ~ 21823767 (+) True G685162
TU780201 lncRNA downstream 102374 21824556 ~ 21824773 (+) True G685163
XM_036985013.1 mRNA upstream 290303 21406192 ~ 21422857 (+) False LOC110529590
XM_036985014.1 mRNA upstream 290303 21406192 ~ 21422857 (+) False LOC110529590
XM_021611926.2 mRNA upstream 483050 21143069 ~ 21230110 (+) False LOC110529585
XM_021611924.2 mRNA upstream 483050 21154291 ~ 21230110 (+) True LOC110529585
XM_021611923.2 mRNA upstream 576335 21117379 ~ 21136825 (+) True mcm9
XM_021611947.2 mRNA downstream 49881 21772063 ~ 21774545 (+) True LOC110529595
XM_021611949.2 mRNA downstream 57688 21779870 ~ 21782714 (+) True LOC110529596
XM_021611950.2 mRNA downstream 67034 21789216 ~ 21816690 (+) True LOC110529597
XM_021611953.2 mRNA downstream 152217 21874399 ~ 21876744 (+) True LOC110529600
XM_021611954.2 mRNA downstream 154712 21876894 ~ 21879588 (+) True LOC110529601
TU779524 other upstream 288596 21419348 ~ 21424564 (+) False LOC110529590
TU779525 other upstream 288596 21419348 ~ 21424564 (+) False LOC110529590
TU779504 other upstream 288768 21419348 ~ 21424392 (+) False LOC110529590
TU779521 other upstream 288768 21419348 ~ 21424392 (+) False LOC110529590
TU779532 other upstream 288768 21419348 ~ 21424392 (+) False LOC110529590
TU780275 other downstream 202935 21925117 ~ 21926280 (+) False G685215
TU780277 other downstream 202935 21925117 ~ 21926356 (+) False G685215
TU780265 other downstream 203102 21925284 ~ 21926229 (+) False G685215
TU780379 other downstream 361692 22083874 ~ 22084224 (+) True G685311
TU780597 other downstream 700876 22423058 ~ 22433035 (+) True LOC110529616

Expression Profile