RNA id: XM_021611950.2


Basic Information

Item Value
RNA id XM_021611950.2
length 3321
RNA type mRNA
GC content 0.47
exon number 19
gene id LOC110529597
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 21789216 ~ 21816690 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgtagcctactgtacaataCATCAAGAAAGAACTATGTATGTGAATGTACTAAAATCCCATTGACATACACAGCCTGACCTCTGCTCCATGTCCTTGTTAGGCCAATGATTGACTGACGAGTGAAATCTATTTGTCTTACTGACATGGCTAAAAAGACACAAAACGTATCGAACTGGTGAGTTTGTATATGCTGCTTGACAGTGCTCATCATGGACCTGTACAAAACAACGTTCTTGCTAGGCACTCTTTTATCTGCAGTCAGTGCGGTTGTCCTGGACGAATATGCAAAAACAGAGGGCGCCTGGATTCTCTCTTTGGTGAAGAGGGAGTATTCAGTAGGCACAGTCCTAGAATGTGCTATCAAGTGTAACATTGAACCAGCTTTCACTTGCAGGTCCTTCATGTACGTTGAAAAGGATCAAGAATGTTTGACAATACCAGCAAATGGCAAAATAGAGTCTGTTCTGAGAAGAACCAGCACTTCTCTATATGAAAAGAAAGAGTACTTGATGGAGTGTGTAAATGGAATCGGTATGGACTACAGAGGAACAAAGTCCAAAACAAACTCAGGGAAGACTTGCCAGAGATGGGCATCGAAATATCCACACAAGCCTAACATGACTCCATCAACACACCCCAAAGCCGACCTGGAGTCCAACTTCTGCAGAAACCCTGATGGGGACAGCAAAGGTCCATGGTGCTACACAACAGACCCTGACACCAGATGGGAGACCTGTAATGTCCAGAACTGCAGCGAGGAATGCATGCACTGCAGTGGTAAGAACTACAGGGGAAAGATCTCCACCACTGAGAATGGCTACACCTGCCAGCACTGGAACGCCCAGAAACCTCACAACCATGGCTACATTCCCAGCGCtcTCCTTGAGAAGTACCTGGAGGAAAATTACTGTAGGAACCCAGACGGAGACCCCAGACCCTGGTGTTTCACCACCAGCCCCTCCAAACGCTGGGACTTCTGCTCTATCCCTCGCTGCACCTCTGACCCTCCCAGGGTGGTGGAGGAGCTCACCTGTGCCACAGGCGACGGCAGTGCCTACAGGGGAACCATCGGAGTGACAGCATCTGGGAAAGCCTGTCAGGTCTGGGCAACTCAGACGCCCCAACAGCACAACAGAACTCCAGACAACTACCCATGCAAAGGCCTGGAACTGAACTACTGCAGGAACCCAGACCATGAGAAGATGCCCTGGTGCTTTACTACAGACCCAGAGACGCGCTGGGAGTACTGCAAGGTGCCTAGCTGTGGAGATGTTCCTGGACCAGATTACGCAGCTCCCCCTCCAGCTGAGGAAGACTGCTATGTGGGCGACGGGACCGACTATCGTGGTATGGTGACAGAGACCATCAGTGGGAAGAGATGCCAGTCCTGGAGCTCGATGACACCTCACAGTCACAATAAGACACCGCAGGTCTTCCCTAAAGCCGATTTGAGAAGAAACCTGTGTAGGAACCCTGATGGCGACCGTGCACCATGGTGCTACACCACTGACCCCTCTGTTCGTTGGGAGTTCTGCAGTGTGAATAGATGCCCAACTGCTCCCAAGCCTACTCCTAAACCTGACAAACATGACCAGCCCGAACCAAAACCCTCCCAGGCACCATCAGACGACAGCAGAGATTGCAAGGTGGGCAATGGGGGGACATACAGGGGTCCTACTTCCATGACCATGTTGGGTGTCACCTGTCAGAGTTGGAGCGCCCAGAGCCCCCATCAGCACGCCAGCTTCACCCCTGAATCCCACCCTGACAAAGGCATGGAGTCCAATAATTGTAGAAACCCTGACAATGATGTGAATGGACCATGGTGCTACACCACAGACAGAAACCAGAAATGGGACTACTGCCAAATCCCAGATTGCGCTGGCTTGAAATGTGGGCAGCCTGTTACAAAGCCCAGGAGGTGTTTCGGTCGCATTGTTGGAGGTTGTGTATCCAAACCCCACTCATGGCCCTGGCAGATCAGCCTCAGGACTAACACTGGCGTCCATTTCTGTGGAGGAACTCTGATTGCCCCTCAGTGGGTCCTCACTGCTGTCCACTGCCTGGAGAGctCAAAGAGGCCATCTGCCTACATGGTTGTATTGGGAACGCATACAGAGGGAGCAAATGAACCGTCCAAGCAGGAGCGTAAGCTGGAGAAACTGATCCTGGGACCTGGCGAAACAGACATTGCACTTCTGAAGCTAGAGAGCCCTGCAATCATAAATGACAAGGTTTTACCAGCATGCTTACCTGAGAAGGATTATGTGGTACCACCTGGAACAGAGTGCTATGTGACAGGATGGGGAGAGACACAAGGAACTGGTGGAGAAGGGCTCCTCAAGGAGACGGGTTTCCCTGTTATAGAAAATAAAGTGTGTAATCGTCCAGCCTACCTGAACAACAGAATCAAGGACCATGAGATGTGTGCTGGGAACATTGAAGGGGGAGCAGACAGTTGCCAGGGTGACAGTGGCGGCCCTTTGGTGTGCCATGCTCAGAACACCTTTGTTCTCCAGGGAGTGACATCTTGGGGTCTGGGCTGTGCTAACGCCATGAAGCCAGGAGTGTACGTCAGAGTATCGAAGTTTACGGATTGGATTAACAGTCAGATAAAGATGAATTCTTAACCCTCTACTATACATCCATAATCTCCAGGAATGGATCATTTGAGCCCTAAATGTAGTTTTAGTAAGACTTGAAAGTACAAATTAAATACCTGTCGTCAGTGATTTCTTCCGAAATTGCAAGGTTCATTGTTTTTgtttagaaaataaaataaaataattatattgATAAGCAATCCAATTATATTCTAGCCTGGTACACAACCATGGTGTTTGACCACATGTTAAAAAAAGGTAACAAAGGCTGACATTTTGTAAGAGCTTGTGTCATTAGGTTCTTTGCTGGGaaacctttttaaaaatgttggtcAGGTCAgtcaaaaataaatgtatataatATTTAACATGACTGGGGTATATTAACATTTGGGATAACTACAGACAGTTTAGAATAAGAAACTTCTCAAAACACACTAGAGAAGATGACATTTCTGgcaatttctaccataaaactagTGGAGGAATGATAAGGGATATCATTTGGGGATTTCCAACtgaaatatttattttcaataatAGAAATGCCCATTgtgtattttaacagcaaaaTTATTATTATGATAATTATTATGATCTAAAATGATGTCctgtacagtaatacatataAATAGCAGCACCTCAAAAACATGAAAAGATTCACATCAGCTAGTGTTGGGAAACaacaaatgcaaaaaaaaacatataggCTAAGC

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K01315 PLG; plasminogen

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU780153 lncRNA upstream 40182 21748512 ~ 21749034 (+) True G685116
TU780149 lncRNA upstream 58208 21730766 ~ 21731008 (+) True G685112
TU780120 lncRNA upstream 94114 21694872 ~ 21695102 (+) True G685084
TU780114 lncRNA upstream 97624 21691284 ~ 21691592 (+) True G685078
TU779940 lncRNA upstream 205823 21582999 ~ 21583393 (+) True G684926
TU780198 lncRNA downstream 6103 21822793 ~ 21823017 (+) True G685160
TU780200 lncRNA downstream 6872 21823562 ~ 21823767 (+) True G685162
TU780201 lncRNA downstream 7866 21824556 ~ 21824773 (+) True G685163
TU780202 lncRNA downstream 8279 21824969 ~ 21825285 (+) True G685164
TU780226 lncRNA downstream 47370 21864060 ~ 21864651 (+) True G685183
XM_021611949.2 mRNA upstream 6502 21779870 ~ 21782714 (+) True LOC110529596
XM_021611947.2 mRNA upstream 14671 21772063 ~ 21774545 (+) True LOC110529595
XM_021614352.2 mRNA upstream 67034 21713160 ~ 21722182 (+) True LOC110531076
XM_036985013.1 mRNA upstream 366359 21406192 ~ 21422857 (+) False LOC110529590
XM_036985014.1 mRNA upstream 366359 21406192 ~ 21422857 (+) False LOC110529590
XM_021611953.2 mRNA downstream 57709 21874399 ~ 21876744 (+) True LOC110529600
XM_021611954.2 mRNA downstream 60204 21876894 ~ 21879588 (+) True LOC110529601
XR_002474422.2 mRNA downstream 88321 21905011 ~ 21911429 (+) False LOC110529604
XR_005052833.1 mRNA downstream 88321 21905011 ~ 21911429 (+) False LOC110529604
XM_021611961.2 mRNA downstream 110320 21927010 ~ 21929650 (+) True LOC110529606
TU779524 other upstream 364652 21419348 ~ 21424564 (+) False LOC110529590
TU779525 other upstream 364652 21419348 ~ 21424564 (+) False LOC110529590
TU779504 other upstream 364824 21419348 ~ 21424392 (+) False LOC110529590
TU780275 other downstream 108427 21925117 ~ 21926280 (+) False G685215
TU780277 other downstream 108427 21925117 ~ 21926356 (+) False G685215
TU780265 other downstream 108594 21925284 ~ 21926229 (+) False G685215
TU780379 other downstream 267184 22083874 ~ 22084224 (+) True G685311
TU780597 other downstream 606368 22423058 ~ 22433035 (+) True LOC110529616

Expression Profile