RNA id: XM_036985028.1


Basic Information

Item Value
RNA id XM_036985028.1
length 9524
RNA type mRNA
GC content 0.51
exon number 48
gene id LOC110529599
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 21832528 ~ 21872462 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAGTTTGTCATGTGATTCACCCAGTTCCTGCTGAAGACTACCAGCGGACTTTTGCTGTATCATGTCGGACATAATGCTCTAGTTTATAATACTGGATACAAAACATGCACTCGCTTTGCAATTGTAACAAGGCTGTGCCTTGGAAAATAGTAATGTTACTTGTTTCGATCACAACGGTCCTGGTTACATTTCCCTCCGGCACAGCGGGTTCTGATGTCAGCCTCTGGTACCAAGACCTCTGCAGTTACAAATGGGAGGCTATAGACCAAGACAACAAAGTAAAATACACACTGAAGCTCTGTGACTCCTCACCTCACACTGGATGTGGGGCCGGCAGTGCTGTCTGTGCCAACAACCTCACCAGTCAAAATAACCAGTCAGTGGGTGATCTGTCCTTAAAGAAGGTGACTGGGAGCAGCGTGATAGATTTCAACAGCACTGAGAAGTGCCCAGGCAGTAGCGATACTAATGTCCAGAGCAGCATCAGTTTCCAGTGTGGAAAGACTATGGGAACACCAGAGTTTGTCACTGTGGCCCAGTGTGTTCATTATTTTGAATGGAGAACATATGCAGCCTGCAAAAAGGATAAATACAAGCCCAATAAAGAGGTCCCTTGCTATGTCTTTGACACGGATGGGAAAAAGCATGACCTGAACCCACTCATCAAACTCACAGATGGTTACCTGGTGGATGACTCGGATGATGAAGTTGACTTTTATATTAACATATGCAGAAGCCTAAACCGACCAGAGAGCCCCTGCCCCGCAGGCTCTGCTGCCTGCTTGACCACCAGCAATGGCTCCTTCAGCATGGGCCTACCAACTACCCAGCTAGAGCTGATCTTCAAGGACCGATTGAGGCTGCGATATGAGGGAGCCTCAGTCAGCCCGCCGGACTTCTGCAGTGGCCATAACCCTGCTGTCACCATCACTTTTATCTGCCCCTCACGCAGGCAGGAGGGTAGTGACCCCAAGATGACAGCCAAGTCCAACTGCAGGTATGAGGTAGAGTGGGTGACGGAGTATGCCTGCCACAGAGACTACCTGGAGAGTCACAACTGCACCCTGTCCAGCAAGCAGCACGACATCAACATAGACCTCACCCACCTCACCCTCGGCCCTACAGACGACCCCTATATGGCTGAGGACAAGAGCAGCGATGGGAAGGACAACTATTTCTACTACCTGAATGTGTGTGGGGAGACCAAGGCAGGAGAGTGTGGTGACGACCAGCACTATGTGTCCACCTGCCAAGTCAAAGCAACGGGAGATGTCAAAAAGATTGCCGGGAGATACATGAATCAAACACTAAGGTACTCTGATGGAGATCTGACTCTGATCTATCCAGATGGGAGCAGGTGTAGCTCAGGCTTTCAACGCATGACCATCATCAACTTTGAGTGCAACAAAACAGCAGGAAACGGTGGCCGTGGCTCGCCTGTGTTTGCTGGTGAGACAGACTGCACCTACTACTTTGACTGGCAGACGGCTTACGCCTGTGTCAAGGAGACGGAGGATCTACTCTGCATGGTCACAGACAACAAGACTGTACACTATAAGCATTATGATCTGTCCACCTTAACACGTTACCCTGAGTCTGAGTCGGCCCAGAACTGGGAGGCTGTGGATGCCAATGCCCCCAAGTCAGACAGGATGCGCTACTACGTCAATGTGTGTCACAAAGTCCTCCAGCAGGGGGCCACCAGCACCTGCCCCGAGGACGCTGCCATCTGTGCAGTGGGAAAGGAAAAAGTCATCAGCTTGGGCAAATTTCTCACCTCCCCTACCAAGACTGACCGCAACGACATACAGCTGGTATACACTGAGGGAGGAGAATGCAGGAAGCACACAAAAATCAAGACCATCATGATTCTGAAGTGCAAGCCAGGTGACCTAGAGAGTGCCCCCATCATGCGGAGTGTGTCCAGTGACGGCTGTGTGTATGAGTTTGAGTGGTACACGGCTGCAGCCTGCGTCATGTCCAGGACAGAGGGGGACAACTGCAAGGTGGAAGACCCTAAAGCTGGGTTCTCATTTGATCTGTCCCCCCTGTCTAAACCTGGAGGAGGCTTCTACAACATGTCCAATGGAGATTATGACTACTTAATTAACGTCTGTGGCTCTGTCACTGCAGCCAAATGCCCTCTGAAGGCTGGGGCCTGCCAAGTGGACCAAAGTGGCTCTAATTCATGGAGCCTGGGGGAGTTTAACTCTCAGCTGTCCTACTATGACGGGATGATCAAGCTGTCCTACAATAACGGCTCTCAGTACAACAACATGCAGCACACCCTTCGCTCCACTATGATTTCCTTCCTCTGTGACCGAGAGGCCGGCGCTGGAAAGCCAGAGTTTCAGGTAGAAGACAAGTACACCTATAACTTCAGGTGGTATACGTCCTATGCCTGTCCAGAGAGGCCACAGGAGTGTGTGGTAACAGACCCCAACAGTCTGGACCAGTACGACCTCTCCAGtCTTTCACTGTCTAGTGGAGGGAGGAACTGGCAGGCCATGGACCTGTCTGACCCTAACAACCTGAGGAAGTACTACATCAATGTGTGTCGTCCTCTGAATGCCGTGCAGGGCTGTGACCGCCAGGCCTCCGTCTGCCAGATGAAATACGAGCCTCAGCAGGGCATTCTGTCTGAAACAGTGTCTGTCAGTAACATGGGCCTGGCTAAGAGAGGTCCAGTGATCGAGGAGAAGGACCGTCTGCTGCTGGAGTACACGGGCGGCTCCAAGTGCATCTCAGATGGACTGAAACTCACCTACACTACACGTATCCACCTGGTCTGCTCCAGAGGGTCTGTGTCATCCGGCCCTCGTTTCCTTAGTTATGGAAACTGCACTGCCAACTTCATGTGGGAGACCGGGGCAGCTTGTGCCATCAGTACTGCTGATGACAAGAACAAGACCTGCTCTGTGAGGGATCCCAACACCGGCTTTGAGTTCAATCTGCATCCTCTGTCCTCCAAGACTGGCTACAAGGCTGAGGGGAATGGGAAAACGTTTGTGgtgaaTATCTGTGACGAGGTGGCGGAGTGTAGTAAGGACCAGGGGATGCCTGTAGCTGGCTGTGAGCTGGACCATGGCCTGGTTGTTGGTCCTGTGGGAGTGGAGAGATCTCTACAGTACTCTACTGACGGCCTGCTCACACTCACATACAAAGGAGACCTGGACAGGCCTACAGGCACCAGGGACACCTTCACCATTAGTTTTGTGTGTGACCAGGACGCCCACCCTGGCACTCTGAAACTGGTCCGGGAAGAGCTCAGCTCGTCTACACACGTCACCCATGATGTCCTCTTTGAGTTCTCCACAGCCCTGGCATGCATCCCTGCCCCTGTGGACTGTCAAATCACTGATTCCCATGGTAACGAGTATGACCTGAGTCACCTGAGCAGGGACAGTGAAGACAGTCCCTGGGTGGCCATCGACACGGCTGAACAGGCTAAGAAACGCAGCTTCTTCATCAACGTGTGTAAACCTCTGCCTCCAGTCCAGGGCTGCCCGGCGGGCCTCTTGGGTGCATGTGCCACCATGGAGGGTAAAGGTGTGAACCTGGGCTACGTCCAGTCCAACCCCCAGGTGGCCTCTGACGGCTCCATCAGCATCGTCTACCTCAACGGGGACCGCTGTGACACAGACCACTACTCAACACGTATCATCTTCCAGTGTGACGACAACCCTGGTTCTCCTGTATTTGACCGCCAAGACGGCTGTGAATATGTGTTCATCTGGAGAACCTCCGAGGCGTGCCCTCTCACCAGCGCTCAGGGTGAAAACTGTAAAGTCAAGGACCCCAGAAGTGGCTACATATTTGACATGAGCTCCCTGTCAGGGAAGGACTACATGGTGAAGAGTGGCCAGTACCAGTACCACTTCTCTGTCTGTGGGGGGCTTCAGCGAGGGATctgcacacacaaagacacaggcaGTGACCAGGTGTCAGTCTGTCAGGTGGAAGGCAGCACCCATAGAATTGCCGGCATTGCCTCACAGACTCTGAGCTATGTTGGAGAACAGCTGGTACTCAACTACACTGGTGGGGAGACCTGCCATAGGATCTATCAGAGATCCACAGCGATCTACTTCTCCTGTCATCCTAAAATGAACCCTGGGGTGCCAGAATTTATCAAGGAGACTGCAGAGTGTACCTACCTCTTTACCTGGCGAACAGCTCTCGCCTGTATCCCTGTGAAAACTACCAGCTGCTCATACCAAGATTCTAATGGAAACTCGTACGACCTCTCCTCTCTGGCCCTGAACTCCAGAAACTGGGTGGTGGAGCCCAGCACTGGGAAGCAAGAGCGCTACTACATCAACGTCTGCAAGTCTCTGGTGCAACAGGGGGGCTCCTGGAAGTGTCCGTCCAACGCGGCGTCCTGTCTGAAGAGTGGGGAGCATTATGTGAGTCTGGGAGAGGCCGAGTCGGCCCCACAGTGGGACCAGAACATCCTTGTACTCAAGTACACCAACGGAGAGATGTGTTCCGGTGGACAAAGGAATAAGAGCACCATCATACGCTTCAAATGTGACCGTGACAAAGTGGACTCAAGACCAACCCTGATCATGGCCATAGAGGACTGTGTCTATACCTTTGTGTGGTTCACTGCAGCCGCCTGCCCCCTCAACAGCAGCCAGCATGGCGACTGCAGAGTCACCAATCCAGTCACCGGCCACCTCTTTGACCTGAATGGACTAAGCCAGGAGGGAGGCTACACTGTGTATGACAACCTGGACCCTAGGAAGATGTTCCGGCTCAACGTGTGTGGGGAAGTGGCCAACGCAGGTTGTGGACCAGACACAGGTGCAGGTGTGTGTATCAAGGAGACCAAGAGTGCTCTGAGTGGCGGGCGGGCCAGCAGGAAGCTGTCATACCTGGACCAGGTAGTGGAACTGACCTATGAGGGCGGGGCTGTGTGTGCAGCCAACCCTGCCATCACACACAAAAGCATCATCAGCTTTGTATGCAAGGCCCACGCAGAGGCCAGCACGGGGCCAGTACTGGTGTACTCAGACAAGAACACGTGCACACACTTCTTCTCCTGGCACACGCCCCTGGTGTGCGAACAGCAGGTGAAGTGTTCAGTCCTGAACGGCTCTACCCTCATCGACCTGACTCCTCTGATCCATGTGACGGGCTACTACATGGCCACAGACGAGGACCTGGTGGACAAGGACCAGTCCCCTGACTTCTACATCAACATCTGCCAGCCCCTCAACCCCATCCCTGGGGTCACCTGTCCCCCAGGGGCCGCTGTCTGCATGGACCCTGACGATGGGCCCCCTGTTGACATTGGTCGAATCACTTCCACCCCGGAGTTCAACAGCATGACCAATGAGGTGTCAATCACCTTCAACAGCACCACCACCTGCCCCTCTGACTCCACCCAGAACTACACTTCCACCATCCTGTTCACCTGCCAGAGAGGCCTGGAGCTGGGCTCGCCCCAGATGATCAGGAAGCAggactgtatgtatgtgtttgagtgGGCCACTCCGCTGGTCTGTCCTGATGCCACTCAGACCAGTGTCTGTAACCTAACTGACTCACAGCTGCAGTTCACCTTtgacctctcacccctctctgggGAGATCCAGGTGCCCGGCGTTGGTTCAGAGACCTATAAGATCAATGTGTGTGGGGCGGTGACGGACCCCAAATGtaagaacagtgcagtgtgtgtgcagTCGCCAGGCGGATCAGCATTCTCCTATGGCATCAGCCAGGCCATGACTATGGACTACAAACACGAGGAGCAGGCTGTCATCATGCAGTACGGAGGAGGAGACGTCTGCCCAGCAGTGACTGAGAATGAGGAGGTATGCGTGTTTCCCTTCAACTTCCTGAAGAAGTCGTACACAGCATGTACAACCGAGGGCAGGATGGATGGGAGACTCTGGTGTGCCACCACCAGCGACTTTAACAAGGACAGGAAAAGGGGATTCTGCGCTAATGTTACTGGGAAGAGGCAGTCGTCCATCCTGTTCACCTGTGACCAATCAGCCGGCCATGGCACCCCAGAGCTTCTCAGTGAGACAGGAGGCTGCGCTGCCACCTTCCAGTGGAGAACCATGACTGTATGCCCACCCAAGAAGATGGAGTGTAAGCTGGTGAACCAGCACCAAACTTACGACCTGcgcaccctctcctctctcacagagCCCTGGAAGTTCAGCCACAACAAAATGGCGTACTATATCAACCTGTGCCAGGGGATCCATGGGGGCCTGCCAGACTGCCCCGAGGGAGCCACGGTGTGCCGGAGGACCAGCGAGGGGAAGACCCAGACCCTGGGCCGTGTCTACACCCAGAAGATGGCCGTCTCTGATAAGAAGATCCTAGTGAGCTACACCATGGGAGACACTGTGTGTGGAAACGGCCTCAAGGCCAAGACAGTGGTCCAGCTGACCTGTGGTCCTAATATAGGCCAGCCCAAGCTGCTGAGCGTGGATGAAGCCTTGTGTGAGTTTGTGCTGGGCTGGGAGACTCGTGCTGCATGCGCTGCTCAACAACGTGAGGTGGTGATGGTCAACGGAACCATCAAAGTCCCCGATACAGGTGCCAACTTCAGCCTGGGGGCCCTCTACTACAGGCTCCACCAGGCCTCTGGGGACATTCGCTCCAATGGGGACAAGTACATCTATGACATTCAGCTGTCAGGCATCACCGACAGCTCCTTCTCCATGTGTCTCGGGGCCAACATCTGCCAGGTGAAGATCAACGGAGACTACAGTAGAAAGATCGGCTCCTCCAGCAAGGCCAAGTACTACATCAAAGGTGGTAACCTGGACGTGCTGGTCCCATCGGAGTCTGTGTGTATGCGGGACAATTCCAATACAGTGTCGTCGGCCATCTTGTTCCAATGTAACCCCTCGGCCGGGGAGGGCATCCCAGAGTTTCTGTTGGAGACGGACGGATGCCAGTACCTCTTCATCTGGCACACCTCCACTGTCTGTGGCCTAGTAACTGTGGATACCTCCGAGTCCAAGCAGACTGATGATGACGGAGGGGAGGACCATAGGGCCTTGTCTGGGAGGAGCCAGGCTGTGGGGGCGGTCCTGAGTGTACTATTGGTTGTGCTGACCATCTGTCTGCTGGTTCTGCTACTGCACAAacgagagaggagGGAGCTGGTTATACAGAAAGTGATTGGATGTTGCAGGAGAGGAAACCCTGTTTCTTATAAATACTCTAAGGTGACCATGGATGATGAGGGAGGGGACGATGAAATGGAGTGGctgatggaggagatggaggccCCAGCCATGTCCTCTCGCCTCGGAAAGGAGGGCCAGGAGAACGGCCACATCACCACCAAGCCCGTCAACGGCGACGCCCTGCGCTCCTTCTCCCTGGACGAGCAGGAGGACAGTGAGGACGAGGTCCTATCTGTCCCCGGGGTGCGTGTCCATGGTGGTCGGACAACTCTACGGCCCTCGAGCTCCAGGACCCGCACTTCAGGACCCCTCCGCAGCGCCCtgctggaggaggagagtgatgaggACCTGGTGGGTCTcctggaggacagggggaggaggggaagggccAAGCCTCACCGTGACGACAGACCCCCCCACAGGAAACAACAAGAGCCCCAGGATGACAGCGATGAGGACCTGCTGAGAGTGTGAGGGACTCGCCATTCTCCCGTCCACCTGAACTAatatctctctcttactctttctctctctctttctctgaatgTCTCCGCACAACGACGACAACGCAAGAAAGCAGAAACCCTTAGAGGCgttttgtttattttgtaaaGGGAACGATGCAGAATGTCTGTTGGCCGTTTACAGTTTTAAAGAgcagatttttgggggggggcccTCTTGGAAAGAAAGTCGATGCCTTCCTGATGAGTGTTTTCAtcaattaatattttttttgtactgtttgattttgatttaatttATGTACATAGGTAATGGAGTTCTATTTTGTCACTTGCATCTTCCTAAGAATTGCTAATTCAAgttttttattatttaattttGTGGACTGATTTGCTCTGTAAAACTCTATACTGCCAACCTTGCCAGGATTGGACATGATTGGCCTCTGTGTGAATGGATTGTTGTGAAAATGGAAAATAAGTTATTGGGAAAACAGGGACTTGAAACTGTGTTGCTCAAACCACGACTCATTGGTACATGAGATTCTTaggttgtattattttttttgagTTCCCTATATCGTATTTATTCAACAACAGTATATCAAATCATCATGTGGTTTTGTACTTGCACTCCATATGTACCATATGTATCACAGGCACAGCTAGTTGCCGTATCTGTTAAATGCTATAAATTAACTCTGCTTCTAGATGTTGCCTTGTCAAAGTCATGACCTAAATTTATTTGAAAATTTATGTTTTCTGTAGAGCTGAAATTCACTTTTTGCCAAATTGCATGTGCTATCCCTCATAAACGGAAGTCATGAAAGTTGTAGCTAGTGCCATTAAATGCAATGTATTTGTGAGCTTGAGATCCCCTTTTCGGTCTTACTCAGCCATATCTATCCCTTGTATTACCTTTCTGGGAAAATATGGATTACTTGAAATGAATTTAGCATTTATCAGTTGgcacacacaagtacacaaaCACCAGTACACAAATCACATGTACACAGGCAGTCACTTATTCCACTCTCATGTATCTGCAGTTGGGACAATGCCTCATATTAATGTCAGTGGTACAAAACAGTAATTAGAAAAAGCTTTTGAAGTGGAACTTGCCTCACTAACCAGTCTGGCTACAGGATTCTTGTTACCGTTGTCTCTCTTCAGACTTCAAATTGGAGAGTTTCTGTGTTATGCCAGTGTTTATCACCAGTGTTGAAGCGAATGTTCACACACTTAGCAAGCCGCTAGCCATAGTGACTTTATCCAAAAAATAAAGGTTCACCTTTCAGGGTATTTATTAAGGTTTGTAGCTGCACATGTTATTAATAGGAGAAACGTTTTGGAAATATAGCAGAAAAAAACTTCACAATATTGTGCAAGGTTATAAAATATCTAATTTTGCATTTATTTTCATAAGTTTCCACACCTCCCAAGATCATGAATTGAAATTGTGACAGAACTGTGCAAAGGCTAATATTTAAAACACACATTACTGTAGAAGTCAGATGAAAATGAAAAAAAACTAAGACTGCAAGTCAGTGTTTGAGTTTGGTCCCTGAGAAAAAATGAGATGTCTTCAGGTACTTTGATATGGGGAAAGAGCACTTGCTACCTTTCCTGCCTGGTAGTAATTTGAAGGAAATCCTTGCTCGTTGTATAATGTCTAGGTCTGCTGTAAGCACCAAAGCACGTCTGCTTGGTTCATCTGTGTGGGTATGAATCATGGGATAAGGAGCTCCATTCTGATGAGTTGGTACTTTTGGAGGTGATTTGGTTCTtgtatgttattttctcaaacatGTTTTACTGCTTTTTGTCTGTTTTCATGTTTAAATTTTGATGTAAAAATGTTGCATTATTTGAATAAAAAAAGAGCTCAGCTGTCCGTCA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K06564 IGF2R, CD222; insulin-like growth factor 2 receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU780838 lncRNA downstream 34506 21751001 ~ 21798022 (-) True G685721
TU780864 lncRNA downstream 51238 21772241 ~ 21781290 (-) True G685740
TU780822 lncRNA downstream 103178 21728885 ~ 21729350 (-) True G685707
TU780821 lncRNA downstream 104262 21727931 ~ 21728266 (-) True G685706
TU780820 lncRNA downstream 104729 21727488 ~ 21727799 (-) True G685705
TU780914 lncRNA upstream 13999 21886461 ~ 21886735 (-) True G685776
TU780925 lncRNA upstream 40502 21912964 ~ 21913189 (-) True G685784
TU780893 lncRNA upstream 54585 21927047 ~ 21929631 (-) True G685762
TU781019 lncRNA upstream 175296 22047758 ~ 22048399 (-) True G685868
TU781046 lncRNA upstream 210450 22082912 ~ 22083121 (-) True G685895
XM_021611951.2 mRNA downstream 10082 21816712 ~ 21822446 (-) True LOC110529598
XM_036985023.1 mRNA downstream 144464 21558958 ~ 21688064 (-) True afdna
XM_036985021.1 mRNA downstream 144468 21558958 ~ 21688060 (-) False afdna
XM_036985022.1 mRNA downstream 144468 21558958 ~ 21688060 (-) False afdna
XM_036985025.1 mRNA downstream 144469 21558958 ~ 21688059 (-) False afdna
XM_036985029.1 mRNA upstream 15511 21887973 ~ 21905014 (-) False ttc13
XM_021611955.2 mRNA upstream 15511 21887973 ~ 21905043 (-) False ttc13
XM_021611956.2 mRNA upstream 15511 21887973 ~ 21905043 (-) False ttc13
XM_021611957.2 mRNA upstream 15511 21887973 ~ 21905043 (-) False ttc13
XM_021611958.2 mRNA upstream 15511 21887973 ~ 21905043 (-) False ttc13
TU779858 other downstream 353325 21478766 ~ 21479203 (-) True G684844
TU776244 other downstream 3040391 18791230 ~ 18792137 (-) True G681659
TU773944 other downstream 4718000 17113543 ~ 17114528 (-) True G679471
TU773640 other downstream 5202269 16625090 ~ 16630259 (-) False G679210
TU780899 other upstream 47965 21920427 ~ 21924908 (-) False LOC110529207
TU780900 other upstream 47965 21920427 ~ 21924908 (-) True LOC110529207
TU781111 other upstream 286568 22159030 ~ 22161042 (-) False G685953
TU783285 other upstream 1744445 23616907 ~ 23621246 (-) True LOC110529643
TU783300 other upstream 1762847 23635309 ~ 23637408 (-) True G687890

Expression Profile