RNA id: XM_021611954.2


Basic Information

Item Value
RNA id XM_021611954.2
length 2160
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC110529601
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 21876894 ~ 21879588 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAATCAGACATATGTCTGTGTTGGTTAAGTTACTCCAAGTGTACTGTAAAAAACATGCTTATGGAGAATACTGGACATCCTATTTTTGCGTTGTACAGTTATCCTCAGCAATCTGTATGAAAATTTCAGTTTTGCCTCACACTCACCCCTTTCAGTGTCTGGCAGTAGCCACACCCCAAACATCCTAGCAGACCTAGCTAGCTCATGTCCAAGTTCTGTGGAATGGAAAGTATGATTTTTGTGGCATTTTAACTGGCATTCCTCCTGTCTGCCATGACTTCAGCACATAGGGATACATtgactctctcctttcccctgcaAATTTACTCACCACAATCATTGCCTCTActactgtgatttatttacactGGCAAATCCTCATGTTCGCCGTTATAAAAGTGGACTGTATTAATAGGAACATGTGTGCCACCAAAGGTCCACCTCTAAAAGTGCACTGTTAACACAAAGCGTGGAAGTGGGAGGTGATAGGAAAAGCAGGTTTCCTGTTGTTGGGGAGTCAGAACGACAGGAGAgagtgagattgagagagagggggcacgACAGAGGGATACCGAGAACAACCAAAGTTATTACAGGGTAAAATGGGAATAGTAGCCATCCTAGTCATCGTCTTGTGTATGTGTTCACTCAGCTTTACTGATCTGGACAGCGGCACCAAAGATGGAGATCCTTTCGACGCAACACCATCTGAGAACCCAGAGACTCAGGGGAAACAGGCAAGAGAAGACTTACCGGAGGAGCAAGAGCCCAGTCCTGTCTCAGACTTTGACAACACATACAACTATATTTTGTCCAGGCTGGCAGCAATGGATCAGGCCATCCACAGACTGAATGTCGGCCACTACACCCTGGACGTGAAGGTGACCCAACTGTTGGACAGAGTGTCCCGGCTGGACGGCACCCtcggggaggtagaggagaccaTGCAACAGATATCGCTCCTCACGAAAGAGAACCGCAAGGAGATTGGCCGCTTGGAGGGCTGTCAGAAGGGCCGACGGGTGGGGTATAAGTGCTATCTGGTGTACCGCACATACGAGACGTATGCAGGGGCAGCCCAGAAGTGCCTGGAGCGGGGTGGAAGGATGGCCATGCCTCGGGACAGGAAGGAGCAGGAGGCCTTGGCAGACTACGTCAAGGCTTTCTTTCAGCCAGGGAACTGGCCTGTGTGGCTGGGCATCAATGACCTGCGCTCTGAGGGACTCTACCTGTTTGAGGACAACACACGCGTCACCTACTTCCAGTGGCGCAAGCACTTCCTCTCCAGCCAGCCGGACGGAGGCAAGCGGGAGAACTGTGTGGCCATGGCGTCAGATGATGGGGACTGGTGGGACAACTATTGTGACAGGAATATGTCTTACCTCTGTGAGTTTGATGCCTAATCCTTTTCTTCAAACTTTTGACAAGTATCTGACATTTCAGAAACACAAATCCAGCCAAGCTTGACGAAAATGTACCTAGTAGATAATCTACTATGAGTAGTTGTCTATCTTGTTATATAGTAAAatcttttgtttttttgtttgtttgtttaaaaagCAATAGGggatgtcattgatccacaaagAAGTGGGTTGTAATCTATATATCATACTGTTCAATACTCAAGAACATTTTAGTTTACTAGCTGATGGTGCTTGTGTTGAATAATAATCCATAACACATTTAACATActgttaaaaaaaagaaaacagtaTCAAACCCATGGCCTAACAtactgcacagacagacagtggtcaTCTTAGTCCACactgaaaaaataaatatatatgtaatTTATTACTCACTCTAAGCTACGCAAATGTCTTTGGCTGAATACGGAATACTTTGGATGGAATATTTAATCTAAAATTGGATTAGCAAAATATTTATTCAGTTTATCATGATTAAAAGCATACAATGTTATTACTGTACTTTTTCACAGTTAATGTAAACAGAATAGTTCCAGGACAAATATTGGCCAATAAAATATTTGAAAATGCTCGGTCACAGTATCATGATCAGATTTGTTTTACTCATAAAGTCAGTGATTatccttaaaggggcagtgcagtcaaaaacgtgatttccaGTGTTTttttacacagtgtacaaaacattaagaacactgtcctaatattgagttaaactcaattgtct

Function

GO: NA

KEGG:

id description
K17521 CLEC11A; C-type lectin domain family 11 member A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU780226 lncRNA upstream 12243 21864060 ~ 21864651 (+) True G685183
TU780202 lncRNA upstream 51609 21824969 ~ 21825285 (+) True G685164
TU780201 lncRNA upstream 52121 21824556 ~ 21824773 (+) True G685163
TU780200 lncRNA upstream 53127 21823562 ~ 21823767 (+) True G685162
TU780198 lncRNA upstream 53877 21822793 ~ 21823017 (+) True G685160
TU780240 lncRNA downstream 25563 21905151 ~ 21912494 (+) False LOC110529604
TU780243 lncRNA downstream 25563 21905151 ~ 21912494 (+) True LOC110529604
TU780262 lncRNA downstream 33985 21913573 ~ 21913824 (+) True G685212
TU780268 lncRNA downstream 46348 21925936 ~ 21926280 (+) True G685215
TU780437 lncRNA downstream 281035 22160623 ~ 22161261 (+) True G685365
XM_021611953.2 mRNA upstream 150 21874399 ~ 21876744 (+) True LOC110529600
XM_021611950.2 mRNA upstream 60204 21789216 ~ 21816690 (+) True LOC110529597
XM_021611949.2 mRNA upstream 94180 21779870 ~ 21782714 (+) True LOC110529596
XM_021611947.2 mRNA upstream 102349 21772063 ~ 21774545 (+) True LOC110529595
XM_021614352.2 mRNA upstream 154712 21713160 ~ 21722182 (+) True LOC110531076
XR_002474422.2 mRNA downstream 25423 21905011 ~ 21911429 (+) False LOC110529604
XR_005052833.1 mRNA downstream 25423 21905011 ~ 21911429 (+) False LOC110529604
XM_021611961.2 mRNA downstream 47422 21927010 ~ 21929650 (+) True LOC110529606
XM_036985033.1 mRNA downstream 51454 21931042 ~ 21955312 (+) False LOC110529607
XM_036985036.1 mRNA downstream 51454 21931042 ~ 21955451 (+) False LOC110529607
TU779524 other upstream 452330 21419348 ~ 21424564 (+) False LOC110529590
TU779525 other upstream 452330 21419348 ~ 21424564 (+) False LOC110529590
TU779504 other upstream 452502 21419348 ~ 21424392 (+) False LOC110529590
TU780275 other downstream 45529 21925117 ~ 21926280 (+) False G685215
TU780277 other downstream 45529 21925117 ~ 21926356 (+) False G685215
TU780265 other downstream 45696 21925284 ~ 21926229 (+) False G685215
TU780379 other downstream 204286 22083874 ~ 22084224 (+) True G685311
TU780597 other downstream 543470 22423058 ~ 22433035 (+) True LOC110529616

Expression Profile