RNA id: TU780243


Basic Information

Item Value
RNA id TU780243
length 1277
lncRNA type sense_over
GC content 0.44
exon number 2
gene id LOC110529604
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 21905011 ~ 21912494 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCTCAAGCTGGTCGCTTATCGTTGCCAAGTTGCCAACATAAAACAGAATGGCAAATGGGTTCTTTAGATGTTTTGAATGCAATAAGGACGCGCACGAGCTTCGCAAAGATTACAGTAATGGGATCTTGAAGATAATAATATGTgaggacctgagccctaagaccatgcctcaggactacctggcatgatgactccttgctgtccccagtccacctggccgtgctgctgctccagtttcaactgttctgcctgtggctatggaaccctgacccgttcaccggacgtgctacctgtcccagacctgctgttttcaactctctagagacagcaggagcggtagagatactctaaaTGATCGgctttgaaaagccaactgacatttactcctgaggtgctgacttgctgcaccctcgacaactactgtgattattattatttgaccatgctggtcatttatgaacatttgaacatcttggccatgttctgttataatctccacccggcacagccagaagaggactggccacccctcatagcctggttcctctctaggtttcttcctaggttttggcctttctagggaggttttcctagccactgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcactttgagatatcagctgatgtacgaagggctacgtaaattaatttgatttgaagCACACATGCTGAAAGTGTTCCAGCAAGCGTGTAGTGAGTGCAGCATTATTCAACCTGGTGTAGTGGTAGATCATGAGCCTGGATAATCAGTTTAGTATAACAAGAATCACATCAGAGCTATTAGAATGTTGAGACCAGTGCATAAATGTGCTGTTAAAGGGAAACAACATTTGAGTCATTGGGACAAAAGATGTCATGGAGAATAGAGAATTTGTGGTTGTAATTCTCTATCTCCGTGAAGGAGATGAAGAAGAGCTCAGTGTAAGCTCATGAGGATAGTGCCAGCCAGGTCCAGGGCTCAGAGAGTAAAAGTCAGACAGGATCACTGAAGGAGGGCTGACTGTTCTGTGCCAAAGCTGGGCTGTAAACTCTCAATCAGCTTTTCAAAACCCTCTGGACAAGTTAACCAAGGTTTCAGACAGCACATCTGTTGACACAATAAAGGTCATATGTGCTTCTAATCACACAATATTTGATTGCCAGTAATGTAAGTGTTCATCAACAATTGTTTGATGTTTTTAGTTTTGTGTTCATCATATTTCTGAATAAAACCAAACTTCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU780226 lncRNA upstream 40500 21864060 ~ 21864651 (+) True G685183
TU780202 lncRNA upstream 79866 21824969 ~ 21825285 (+) True G685164
TU780201 lncRNA upstream 80378 21824556 ~ 21824773 (+) True G685163
TU780200 lncRNA upstream 81384 21823562 ~ 21823767 (+) True G685162
TU780198 lncRNA upstream 82134 21822793 ~ 21823017 (+) True G685160
TU780262 lncRNA downstream 1079 21913573 ~ 21913824 (+) True G685212
TU780268 lncRNA downstream 13442 21925936 ~ 21926280 (+) True G685215
TU780437 lncRNA downstream 248129 22160623 ~ 22161261 (+) True G685365
TU780494 lncRNA downstream 320129 22232623 ~ 22232848 (+) True G685415
TU780583 lncRNA downstream 441038 22353532 ~ 22354430 (+) True G685495
XM_021611954.2 mRNA upstream 25563 21876894 ~ 21879588 (+) True LOC110529601
XM_021611953.2 mRNA upstream 28407 21874399 ~ 21876744 (+) True LOC110529600
XM_021611950.2 mRNA upstream 88461 21789216 ~ 21816690 (+) True LOC110529597
XM_021611949.2 mRNA upstream 122437 21779870 ~ 21782714 (+) True LOC110529596
XM_021611947.2 mRNA upstream 130606 21772063 ~ 21774545 (+) True LOC110529595
XM_021611961.2 mRNA downstream 14516 21927010 ~ 21929650 (+) True LOC110529606
XM_036985033.1 mRNA downstream 18548 21931042 ~ 21955312 (+) False LOC110529607
XM_036985036.1 mRNA downstream 18548 21931042 ~ 21955451 (+) False LOC110529607
XM_036985035.1 mRNA downstream 18548 21931042 ~ 21955454 (+) False LOC110529607
XM_036985031.1 mRNA downstream 18548 21931042 ~ 21958665 (+) False LOC110529607
TU779524 other upstream 480587 21419348 ~ 21424564 (+) False LOC110529590
TU779525 other upstream 480587 21419348 ~ 21424564 (+) False LOC110529590
TU779504 other upstream 480759 21419348 ~ 21424392 (+) False LOC110529590
TU780275 other downstream 12623 21925117 ~ 21926280 (+) False G685215
TU780277 other downstream 12623 21925117 ~ 21926356 (+) False G685215
TU780265 other downstream 12790 21925284 ~ 21926229 (+) False G685215
TU780379 other downstream 171380 22083874 ~ 22084224 (+) True G685311
TU780597 other downstream 510564 22423058 ~ 22433035 (+) True LOC110529616

Expression Profile