RNA id: TU780899


Basic Information

Item Value
RNA id TU780899
length 2089
RNA type TUCP
GC content 0.45
exon number 5
gene id LOC110529207
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 21920427 ~ 21926307 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCATACACACCAACTGATGATAACTATGGCTAAACCAGCAAAAAAATGAAAGTTGAGTCTAGCAGCAACGATGTCATTCCCTATTTATGTCCATCTTGACCCAAGTCCAGATGTGAGGGCAATGCTTCTGGAGTTCGATGACACGTTCTTCGGGGGAAAGCTCAGTGGTGTAGAAGTCAAATGGAGCCCCTGAATGATACTGTATGCAGGTGTGTGTTCTTACGAAGGAAGAGGTGGACTGTGTTTTATTCGACTCAGTGAGCCTTTACTGAAACTTAGACCCCTTTGGGATCTTGCACAGACACTTCTGCATGAGATAATCCATGCACTGCCCTTCGTGAGTTAGAACAACAGAGGTCATGATGGGCATGGACCTGAGTTCTGCAAGCACATGGAAAGAATCAACCAAGCCGCTGGAACTGAAATCGCAGTCTATCACACTTTCCATGATGAAGTGGATCTCTACCGTCCGCACTGGTGACTGTGTGATGGGCCCTGTCAGACTCGTAAGCCCTACTTTGGATATGTGAAGAGGGTAATGAACCGTGCCCCCTCAGCCCAAGACACATTGTGGGGGGATCACCTACGCTCCTGTGGGGGCACCTATACAAAGGTCAAGTAGCCAGAGGGTTATGGAAAGAAAGTAAAAAAGACAGACAACAGCCAAGGCAAGAAGCCTACAGACAAGCCCACAAGCAAGTGCAAAGCTTCCAGCACATCTACTGCAGGCTCTGGATTACAGGATATAAGGAATATCATTCCATTCAGTGACAAAGGTTTTTTGCTTGGAGGGAGTTCACAGCCACCATCATCAACTCAAAAACCTCTTGTCAACAGTCCTACAAAACCTCTCAATACTCCTGTGTCTCCCagacctgtactgtctcctccaCCTCAGGCAACAGCTAAAGGAATCAACTCACCTGAACGGCCAGGTCTGATTATCCCACAGAAGAAGGGGAGCACCACAACTTACATAGCAAGGGGAGCCCATGGTTCCTTCAGAGGACAGAAATGACCAAAAATGTCAGCAAAACCAAGGCATTTTTAAACATCAATGGTTCACCTGCTAGGGTTTACAAACCCAACAGCACTGTGACCAAGCCACATAGTGACTCCTCAGATGCTTTAAAGACCAAACAAAGTTGTGTCCAAGGCCTTGTTAATGCCAAGTGGCTGGAAGTCTGGAACTGCAGCTAGTAGTAGTACCTCCACGGTCTCAAAACCAGCAGCAGAGACCAAAAGGGCATCTTCATCTGTGGGTGGTTTGAACTTTGGGAAACCAGCCACAAACTGCCATTTCCTCAGATACCAGACAGCCATTTCTCTGGTGTTCCGGCCGCATCAAAACCTGGGTCCCCCGAGCCTTACCATTCCAACTATTTCGAAGGCCCTGAAAATCCTAGTAGAGTCAACATTCCAGTTTCTAGGAAGAGGCCTTGGGAAGACTAAACTTCTGCTCACATCTTTGACCATCAACGTCTAGGTGTACAACGGAGGACAAAGCAGCCCCTTCTGCTGTTCAGAACAGCACTGCCAGCTCTGCAAGCCTTAATGTGACCGTCAGCGGCCCAGTATGCCAAGCCAAGGTGCAATAGTCAATAATCAATGCACATTTAGATTCCTGTCTCTCATGAGAACGGAAACGTGAGCTGAAAGCCCAGCAACCATTTTATATTGCAAAACTTTTCACAAGTCTCAGCATAGGTGAAGTTTTAGAGTTTGTTTCCTTGAATTCAAAGCCGATTTTGCTTATAAGTTTAAATGTACTTTCTATCTCATGTAGGACTGCTGTAAGAGATACAGGTTTGAAGTTTTCCAGTTTGACTTTTGCTTGCATCTACTATGTCTTGTAGCCCATTGTTCAATTGTGAAATTCTAACTCAAACTATCCAAATGTTTTAGCGTTGGAAATGTCCTCTCTTAGGAAGAATTGATTTAATTGGTACCACTTCTACTTGATGGCTCAAGGCAATATTGATATGACATAGGCAATTTATATAGTTGCTGCGGTCTTGAATTTGAAATATGTCTGTCTGGTATGCTGATCTGGTATTATAACATTTCACACATGCTTGCTATTCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU780925 lncRNA downstream 7238 21912964 ~ 21913189 (-) True G685784
TU780914 lncRNA downstream 33692 21886461 ~ 21886735 (-) True G685776
TU780838 lncRNA downstream 122405 21751001 ~ 21798022 (-) True G685721
TU780864 lncRNA downstream 139137 21772241 ~ 21781290 (-) True G685740
TU780822 lncRNA downstream 191077 21728885 ~ 21729350 (-) True G685707
TU780893 lncRNA upstream 2139 21927047 ~ 21929631 (-) True G685762
TU781019 lncRNA upstream 122850 22047758 ~ 22048399 (-) True G685868
TU781046 lncRNA upstream 158004 22082912 ~ 22083121 (-) True G685895
TU781054 lncRNA upstream 164853 22089761 ~ 22090027 (-) True G685903
TU781062 lncRNA upstream 176733 22101641 ~ 22101894 (-) True G685911
XM_021611960.2 mRNA downstream 1638 21915516 ~ 21918789 (-) True LOC110529605
XM_021611955.2 mRNA downstream 15384 21887973 ~ 21905043 (-) False ttc13
XM_021611956.2 mRNA downstream 15384 21887973 ~ 21905043 (-) False ttc13
XM_021611957.2 mRNA downstream 15384 21887973 ~ 21905043 (-) False ttc13
XM_021611958.2 mRNA downstream 15384 21887973 ~ 21905043 (-) False ttc13
XM_021611965.2 mRNA upstream 33297 21958205 ~ 21961107 (-) True c8h1orf131
XM_036985039.1 mRNA upstream 82842 22007750 ~ 22287139 (-) False LOC110529611
XM_036985037.1 mRNA upstream 82842 22007750 ~ 22287353 (-) False LOC110529611
XM_036985038.1 mRNA upstream 82842 22007750 ~ 22288163 (-) True LOC110529611
XM_021611967.2 mRNA upstream 385473 22310381 ~ 22315602 (-) False LOC110529612
TU779858 other downstream 441224 21478766 ~ 21479203 (-) True G684844
TU776244 other downstream 3128290 18791230 ~ 18792137 (-) True G681659
TU773944 other downstream 4805899 17113543 ~ 17114528 (-) True G679471
TU773640 other downstream 5290168 16625090 ~ 16630259 (-) False G679210
TU773642 other downstream 5290168 16625090 ~ 16630259 (-) True G679210
TU781111 other upstream 234122 22159030 ~ 22161042 (-) False G685953
TU783285 other upstream 1691999 23616907 ~ 23621246 (-) True LOC110529643
TU783300 other upstream 1710401 23635309 ~ 23637408 (-) True G687890
TU783403 other upstream 1829924 23754832 ~ 23756910 (-) True G687979
TU783552 other upstream 2063191 23988099 ~ 23988854 (-) True G688109

Expression Profile