RNA id: XM_036985036.1


Basic Information

Item Value
RNA id XM_036985036.1
length 2178
RNA type mRNA
GC content 0.55
exon number 11
gene id LOC110529607
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 21931042 ~ 21958665 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGGGAGCTGCCAGTATTAACTAGTGCTTGCTGCTCTTGCGTTCTGTGTGAGGAGCGTTGAATAGAAGACGTGATGGATGAAGAATTAAAATGCCCCGTTTGCGGTTCTCTTTTCAAGGATCCTATTCTTTTACCTTGCTCGCACAATGTGTGTTTGGCGTGCGCCCGAAATATCATTGTACAGACCCCAGAAGGCGAAACACCACCGCATAACCGTGCCTCCAACTCGGACTACGATTATTTGGATATGGACAAAATGAGCATGTATAGTGAAACGGACAGCGGTTATGGATCATACACGCCGTGCCTCAAGTCTCCAAATGGGGTGAGGGTGTTTCCTCCGACTCTGGTGCACCGCCACTGCTCCATAACGTGTCCTCTCTGTCACCGTAGTGTCTCTCTGGATGAGCGGGGGCTGAGGGGCTTTCCACGTAACCGGCTACTGGAGGCGATCGTGTCTCGGTATCAACAGAGCCGCTCTGCCAACGTGAAATGTCAGCTATGTGACCGCAACCCTGTCGATGCCACTGTGATGTGCGAGCAGTGTGACGTGTTTTACTGCACACCTTGCCAGCAGCGATGCCACCCTTCCCGTGGACCGCTGGCCAAACATCGATTAGTGCCACCGACCCAATCGCCAGTTGCAGGAGGACAGCAGATGCCCACCGCCACCTTGCGCAAACAGGGAACATGTGCAGACCATGACACGGTGAACTTTAGCATGTACTGCATCAACTGCAAGACTCCAGTGTGCATGAAGTGTCTGGAGGGTGGCAAGCATGGGAGTCACGATGTAAAACCTTTAGTGGCCATGTGGAAACAGCACAAGTGTCAACTGTCCCAAGCTTTGAATGGTGTGTCAGATAAAGCCAAGGATGCCAAGGAATTTCTGGTGCAGTTGAAGAACATGCTTCAGCAGATACAGGAAAATGGGGTGGAGTTCGAGGCCTGCCTGGTGGCTCAGTGTGACGCCCTTATTGAGGCTCTGACGCGGCAGAAAGCCAAGCTCCTCACCAAGGTTACCAAAGAGAGGGAGTACAAGCTCAAGGTGGTGCGTGACCAGATCACTCACTGCACTATGAAGCTACGTCAGACTACAGGCATGATGGAGTACTGTCTGGAGGTGATCAAAGAGAACGACCCCAGCGGCTTCCTGCAGatcTCCGATGCGCTGATCAAACGTGTGACATCGTCTCAGGACCAGTGGGTCAAAGGGGCTCTGGAGCCCAAGGTGGGCCCTGAGTTTGACCTGACCCTGAACACCGACCCCCTGCTTCAGACCATAATACAGCTGGACTTTGTCCAGAGCAAAGATATTCAGGAGACTCCATTATTGAAACAAATGCATGCAGGTGGACTGAAAGACACGGAGAGCTCAGGAGTGGAGTCTGCCACGGTGCCCCCGGCCCCCCTGCTGCAGCTGGAGAAGTGCTGCACCCGCAACAACAGTGCCACCCTGGCCTGGAGGGTCAGTGTGTCCCCTAGCAACCCCATTGAAGGCTACGTCCTGGAGCTGGACGACGGCAACGGGGGTCAATACAGGGAGGTGTATGTAGGGAAGGAGACCGTGTGCACCGTGGACGGCCTACACTTCAACAGTTCCTACAACGCCAGAGTCAAGGCCTACAACTCCACCGGGGTGGGGCCCTATAGCAAAACTGTGGTGCTGAAGACATCTGACGTGGCCTGGTTCACCTTCGACCCCGCCTCGGCTCACAGGGACATTGTGTTGACCAATGAGAACCAGACGGTGAGCTGCAACAGCTATGATGACCGTGTGGTGCTGGGGACTGCCGCCTTCTCCAAGGGGGTACATTACTGGGAGCTCATGGTGGATCGCTATGACAACCACCCGGACCCAGCGTTCGGGGTGGCGAGGATCAACACGATGAAGGACATGATGCTGGGGAAGGATGATAAGGCCTGGGCCATGTACGTGGACAACAACCGCAGCTGGTTCATGCACAACAACTCCCACACCAACAGCTGTCACGTTGGAGCCTATCACCCACAATGACTcactcatttccctcattaaagtGCCAGggCCGAGGGGGGCATCAGCAAGGGTGCCACTGTGGGCATCCTGCTGGACCTGAACAAGCacactgtaacgttctttgtcaACAAACAGCAGCATGGCCCCGTGGCCTTCGAGAACCTGGAGGGAGTCTTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU780268 lncRNA upstream 4762 21925936 ~ 21926280 (+) True G685215
TU780262 lncRNA upstream 17218 21913573 ~ 21913824 (+) True G685212
TU780240 lncRNA upstream 18548 21905151 ~ 21912494 (+) False LOC110529604
TU780243 lncRNA upstream 18548 21905151 ~ 21912494 (+) True LOC110529604
TU780226 lncRNA upstream 66391 21864060 ~ 21864651 (+) True G685183
TU780437 lncRNA downstream 205172 22160623 ~ 22161261 (+) True G685365
TU780494 lncRNA downstream 277172 22232623 ~ 22232848 (+) True G685415
TU780583 lncRNA downstream 398081 22353532 ~ 22354430 (+) True G685495
TU780556 lncRNA downstream 446048 22401499 ~ 22402717 (+) True LOC110529613
TU780594 lncRNA downstream 464339 22419790 ~ 22422313 (+) False LOC110529616
XM_021611961.2 mRNA upstream 1392 21927010 ~ 21929650 (+) True LOC110529606
XR_002474422.2 mRNA upstream 19613 21905011 ~ 21911429 (+) False LOC110529604
XR_005052833.1 mRNA upstream 19613 21905011 ~ 21911429 (+) False LOC110529604
XM_021611954.2 mRNA upstream 51454 21876894 ~ 21879588 (+) True LOC110529601
XM_021611953.2 mRNA upstream 54298 21874399 ~ 21876744 (+) True LOC110529600
XM_021611964.2 mRNA downstream 5550 21961001 ~ 21970793 (+) True gnpat
XR_005052835.1 mRNA downstream 332835 22288286 ~ 22292263 (+) True LOC118965501
XM_021611970.2 mRNA downstream 363042 22318493 ~ 22403025 (+) False LOC110529613
XM_021611972.2 mRNA downstream 450714 22406165 ~ 22409857 (+) True LOC110529615
LOC110529616 mRNA downstream 468887 22424338 ~ 22425648 (+) False LOC110529616
TU780277 other upstream 4686 21925117 ~ 21926356 (+) False G685215
TU780275 other upstream 4762 21925117 ~ 21926280 (+) False G685215
TU780265 other upstream 4813 21925284 ~ 21926229 (+) False G685215
TU779524 other upstream 506478 21419348 ~ 21424564 (+) False LOC110529590
TU780379 other downstream 128423 22083874 ~ 22084224 (+) True G685311
TU780597 other downstream 467607 22423058 ~ 22433035 (+) True LOC110529616
TU780557 other downstream 491320 22446771 ~ 22448073 (+) True G685469
TU780646 other downstream 524872 22480323 ~ 22482139 (+) True G685551
TU781664 other downstream 991050 22946501 ~ 22972836 (+) False G686448

Expression Profile