RNA id: XM_021611970.2


Basic Information

Item Value
RNA id XM_021611970.2
length 4874
RNA type mRNA
GC content 0.43
exon number 9
gene id LOC110529613
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 22318493 ~ 22403025 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAATGCATCTAGTCAGAGTTGTCCAGGCAGGGGTATTAGCCACATCGTAGTCTCCATGCCTACACTACACTTTTAAAAAGGGATTAATTCACCCAAGCATCACAGACTGGCTGGTGCACGGATCTCCACGCTGCGCTTATCTAGCTACTGGGAGAGCGAAACTTGAGTGAACTGTTTTATGTTGAAAGGAAACGTTTATTGAGATGCCATTGGGAAAACATGCACCCTTTTTAAATTGAAATTAGAGATGAGACATTTGCATCTGTTATACTTTTTAGTCACAACTTTGACAAGTTCCTGAATGGAGAATAAGGCCATGTACCTGAGTACATACGAAGAGAGGGAGAACGGATCCTTTTATGAGGAGGGCTACGATGGCAGAAACCTATCAAAGCTCAACCTGTGTGAAGACGCTGTTTCTGCCAAGAGGAGAAGAAAGCCAGACAATTGCTGCAGCCACCTGAACTCCCTGTCTGCCATCAAGTATGCCATCGTGTCTCTATACATCTTGGTACTCCTGAGCATCTTTGGCCTCTGTTTAGCAGTGTCCAGGTCCCAGATGTCCTCAGAGAAGCAGGAGGCACTGATGGAGAACATGACCCGTATGGAGGACCGCTCCCGGGAGCTCCAGCAGTCCCTGGGCGACATCTCCTCTCAGGCAGACCTCTTGGAGAACATCTGGAAGTTGGAGAGCCTGTTTCAGAACCACAGTGAGTCCTTAAAGCAGCTGGGCCGGGCAGTGAGCAGCCTGGAGAGGGATATCAGGGATCTGCAAGGCCATTGCCAGTCGACAGACAGCACCGTGGAGCAGCTGGGGGACCGTGTATCCGTCCTGAACCGCTCCACCCAGAGGAACGTGAGTGGGCTCAGCAACCAGCTGGCCCATGCCTCGGTCTCGCTGCACAACCACGACCTCCTGCTGAGGAGCACAGCAGACCAGGTGAACCAGCTCAAGGATAGGCTGGAGGAGGTTGGCTGGACAGTCGGCTCAGTCAACCACACGTTCACCAGCGACATCAGCGTCCATCACCTAAAGATCCAGGACCTGCAGGTGCAGATCAGCAATGCAAGCCATGATGCACGGTACATGAGGGAGACACAAGTGCACATGGAAGAGACACTGAAGAATGAGGTAGAGATCCTCAGCACCATCACAGAGGACCTGAGGCTCAAGGACTGGGAGCACTCCAATATCCTCAAGAACATCACCTCCCTAGAAGGGCCTCCAGGACCAAAAGGTGAGAAGGGCGATGTTGGGCCACTTGGGGCCTCTGGTGTGGCAGGCCTCATAGGGATGAGAGGTTTTACAGGAGAAAAAGGATTCCAGGGTCCAAGGGGACTAAAGGGCCCGAGCGGCCATGACGGCCTACAGGGGGAGAAAGGGGATATGGGACCCGAAGGGCCCAAAGGtaacagaggagacagaggactgAAAGGCGAGAAGGGAGACCGAGGTGACCGTGGTGAAAAAACAGTGGACGAGACACTGGTGAGACTGGTGAATGGATCAGGCCCTCAcgaggggagagtggaggtgtTCCATGAGAGGCGCTGGGGAACGGTGTGTGACGACGTCTGGGACAAGAAGGACGGTGACGTGGTCTGCAGGATGCTTGGCTACACAGGGGCCTTCGAGATCCATAAAACAGGCCGGTTTGGACAAGGTACTGGGCTCATCTGGATGGATGATGTGGCCTGTGTTGGGAATGAGGACACCATCCACCAGTGCAAGTTCTCAGGCTGGGGCAAGACTAACTGTGGGCACGTGGAGGATGCGGGGgtgacatgcaacacctaacacCCACCATTTTAACTCCCACTGAGTTCAGTTCTAAACTGCAGAGTTAAATTGCAGATGACAGGCAGCGTGAGGCAGAGCAGAGGGGCTGCATTCTGACGCCCTACACCTACTGACTGCTGTGGGCAACTGATTTGACTTCAGACCCCTTTAGGGCCTCATGGCCGACTTTGTCTAAGTAAAGTATGTTTAACAATAGCTGAACTAGATTCAGTGCCTATAAAGGACCAACTTAAAAAATGGTCAGTCACAAATGTTTGTCCAATTGTTGACAGATGACGCGATTACAAAGAAAAGAAAGGGAACTAATGCCATTTGAAATAGGTGTATGGCTTGGCCCCAGTACGATTGATTGGCTTGTGTCTGTCGATTTCAACATTTCTGTCTGTGGAAGCAAGCATTGTTTTTTTTATCATCATGActtagagtctctctctctctctctctctctctctttcattattcTCCCTTCAACTGGCTAATTTTGATTATGTTAGAGTGCAGCCAAAAATGCCTATTTCTTCATCGACAATTGCAGGGGCGGTTTGGAGACGTAACGGTTGGTTTATGTATGGAAACCAGGACTAAAGTAAGACAAATTACAGCCCTAGATGGCTTTTTATATTTTGGGAACATTTTTATGCAATTGTAAAACATGCACAACGACTTGAGGTTTATCACAGGAAAGGAAACAGGGAAATATAGATTATTGTGTGAAATAAGCAAAACCAAACGCTGATGTAATACACTTTCAAATGTAAATCAAGTGTTTCCATGAGCATGATATCTTTTATCATAGATTTCTGTAGATGAGCCTAGACAAATATTGCTTTGGGATAAGCAAAGATATGTGCTGAGGTCCTGAGGACTAGGTTTGATATACTTTGAGACACATAAATCTGGACTATCTCTCAGTTTTTCATTTGAAGCGTGGAAGCAGCTCCCCTTTAGACATGGTCCTCACTTTCATCCACTGAGGTTCATATTCCGACAAGTGCTATTGAGGTGTTATAGAGTGCCATAGAGCAGTGGaggttggtgggaggagctataggaggacgggatcattgtaatggttggaatggaataaatggagtGGTATCGAAGAggtcaaacatatggaaaccacatttttgacatttttgacacATTTTTGACATTCCTttataccattccagccattacaacgagcccatagctcctcccaccagcctccagtgCTATAGAGTGCTATAGAGTTTTCTGGTTCgaatacctgagccgacaaggtgaaaaatctgtagatgttcccttgagcaaggcacttgaccTTAATTTGCTCCAGGGGAGCCGTACTACTATTGCGgatcctgtaaaacaacacatttcactgcacctttcTGGTGTATGTGACTACTGTCAAAGATAACACCTTACCCTCTTTGTATATTTTCATTCAGATTGGTAATGCTTCCCTCTTGGGAAAGAAACTATAAACAAATATTTTCTATTGGAATTCTTCAGAATTATTTTCACAGAAAGAAATTATTCTGGTTTTGTAGAAATACATATTCCTGCAGTATGTGATCATTACTATTATAATCCACTCTCAAATATTCAACTAGGGTGCAGTTAGTCTGTGAACATAGAGGTAATTGTTGCATGGATCTTCAACTGTTCTGTAAATTCATCAGTCATGCAATGCCTTTTCAAGTACAAGGGAGCAGCCTGCACACAATTTTGATTTGTATAACAGGGACCACAAACCCAAGTTCCCACTTTAGGAACATACTATCAAATACCAGGATGCTATAATTGCCACAGAATGTGAAGTCGAGATTGGTTGATTTATTATACCATGGTACCCCTGTAACTCTAACCAACACTTTTATTGGACAAGATTTAATAAAGGACTTTTGAGGAGTGTAAATATCTGTTTATCGATTGTGCTGGTCATAACACCcggcccacatgaaaaaatactacagtttactatagaatactacagcacTTACTATAAAATTCTGCAGTaaactgtaatactgtaaaatactatactacactgtaGCATCCCTCGATCATGTGTGGTAGTACTTACTAGAGAACGTTGGAATATAccgtagaatactatagtaaatactacagtattatctgcaaagaaaacactgtaGTAATTACAACagtaatgtccgcaaaaacactacagtcggCAAAAACACTAAACTTTTTAAAACTATATTAAATACTACAATATTTAATTAGCATATACACTGCCCATTCCCCtcggttgtcactagttaccacagccgcATAGCATTTTAAgccccgcctatttctacaacttatcttcttaaaatgtgattttaaacccaaccgtaactttaaccctaaccttaaatacactgctaaccttataccTACCTTAAATTTAGATGAagaatcttttttttttcatccattttttATGTTATAGCCAATTTAGACTTTGTGGGTAtggtaactagtggaaaacaTTCCCTTCCCCCATATTCCAATTTGTTCCACCCacaagtgagaaacctacatgccaagtatagaccatatattgtgttACCCACAGatgatagaaaagagcagaagtgCTGAATTATCTGTTTAGACCCCCAGTCTCAACTACATACAGGTAATTGAAAACATGATATTTTTAGTACTTGTCCAGTAGATTTCCTCAAGGACAAAGCCTCCACTTATGTCaaatataataaaacaaaaacattatagtaagtactacagtaATCTCTTtaaaaaaacactacattaaaaACTGTAGTATATACACTAGTTTTATTTTACTACAATAATTATACGATAGTTAACTgtgaatatacagtataccacagtaaatactacagtgaatattacagtaaagtctgcaaaacactacagtgaatactatagtatttataccatagtatagtattttttcatgtaaTTTGAAATGTTTAAATAAATACAGTGAATATGTGACAATATGTCATATGTTCATTAGATAATACTACTATTTCTTGCTGATAAAAAAAAGATAATGTACTGTTGAAAGAATAAAATGGTATTAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU780494 lncRNA upstream 85645 22232623 ~ 22232848 (+) True G685415
TU780437 lncRNA upstream 157232 22160623 ~ 22161261 (+) True G685365
TU780268 lncRNA upstream 392213 21925936 ~ 21926280 (+) True G685215
TU780262 lncRNA upstream 404669 21913573 ~ 21913824 (+) True G685212
TU780243 lncRNA upstream 405999 21905151 ~ 21912494 (+) True LOC110529604
TU780594 lncRNA downstream 16765 22419790 ~ 22422313 (+) False LOC110529616
TU780598 lncRNA downstream 16765 22419790 ~ 22425369 (+) False LOC110529616
TU780596 lncRNA downstream 20033 22423058 ~ 22425369 (+) False LOC110529616
TU780633 lncRNA downstream 37973 22440998 ~ 22441208 (+) True G685539
TU780657 lncRNA downstream 62673 22465698 ~ 22465899 (+) True G685562
XR_005052835.1 mRNA upstream 26230 22288286 ~ 22292263 (+) True LOC118965501
XM_021611964.2 mRNA upstream 347700 21961001 ~ 21970793 (+) True gnpat
XM_036985031.1 mRNA upstream 359828 21931042 ~ 21958665 (+) False LOC110529607
XM_036985032.1 mRNA upstream 359828 21931042 ~ 21958665 (+) False LOC110529607
XR_005052834.1 mRNA upstream 359828 21931042 ~ 21958665 (+) True LOC110529607
XM_021611972.2 mRNA downstream 3140 22406165 ~ 22409857 (+) True LOC110529615
LOC110529616 mRNA downstream 21313 22424338 ~ 22425648 (+) False LOC110529616
NM_001124418.1 mRNA downstream 70940 22473965 ~ 22478556 (+) True LOC100136120
XR_005052836.1 mRNA downstream 93420 22496445 ~ 22498272 (+) True LOC118965502
XM_021614353.2 mRNA downstream 100847 22503872 ~ 22506362 (+) True LOC110531077
TU780379 other upstream 234269 22083874 ~ 22084224 (+) True G685311
TU780277 other upstream 392137 21925117 ~ 21926356 (+) False G685215
TU780275 other upstream 392213 21925117 ~ 21926280 (+) False G685215
TU780265 other upstream 392264 21925284 ~ 21926229 (+) False G685215
TU779532 other upstream 894101 21419348 ~ 21424392 (+) False LOC110529590
TU780597 other downstream 20033 22423058 ~ 22433035 (+) True LOC110529616
TU780557 other downstream 43746 22446771 ~ 22448073 (+) True G685469
TU780646 other downstream 77298 22480323 ~ 22482139 (+) True G685551
TU781664 other downstream 543476 22946501 ~ 22972836 (+) False G686448
TU781666 other downstream 547157 22950182 ~ 22972836 (+) False G686448

Expression Profile