RNA id: XM_036985052.1


Basic Information

Item Value
RNA id XM_036985052.1
length 2895
RNA type mRNA
GC content 0.37
exon number 3
gene id gje1
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 22804904 ~ 22809549 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCCCCGTGCCTTTGTTTTCCCTTTCCTGTTGTGTTTTTTTCTACTGAGTGAGTAAATTGATGAAGGCACCGCGGATAAAAGACAAATATGCATTGACAAGGGCTTTCAGCGGCAAAAAGGTCATTAGGAGCTTCAGAATTATAGTGGGCTTTGCCTGATGCCAGCATATTGGCAATGAGGGCCACGGGTTACAATATAATTGAACTGGGAGAATAGCAGCAAAGTCATGTCTTTAAACTACATTAAGAACTTTTACGAAGGATGTCTCAGGCCTCCGACGGTGATAGGCCAGTTCCACACCCTGTTCTTTGGCTCTGTTCGGATGTTCTTTCTGGGCGTCTTGGGCTTTGCAGTGTATGGCAATGAAGCGCTCCATTTCAGCTGCGATCCAGACAGGAGGGAGTTAAACCTATACTGTTACAACCAATTTAGGCCTATAACACCTCAGGTATTCTGGGCATTGCAGCTGGTAACTGTTTTAGTCCCTGGAGCTGTATTTCATCTCTATGCTGCCTGTAAAAACATTGACCAGGAGGAGATCCTTCAGAGACCTATATACACCGTCTTCTACATCATCTCTGTCCTGCTAAGAATTATTCTGGAAGTCATCGCTTTTTGGCTACAGAGCCATCTCTTTGGTTTCCAGGTTCACCCACTCTACATGTGTGATGCCAGTGCCCTAGAAAAGACGTTCAACATCACCAAATGCATGGTGCCGGAACACTTTGAAAAGACCATATTTTTAAGTGCAATGTACACTTTCACTGTGATCACGTTGCTGCTGTGTGTTGCTGAGATATTTGAGATACTCTGTAGGAGATTAGGTTATTTGACCAATCAATGACCTGTGTGTTATTTGCTACAGAGTTCTAGGTCATATTTCAAATTTCTGTTTGTCTAATCCAGGTCTGACATGGACACAAAGGCCGAAAACGACATACCTCCGCTTTTTTTGTTGGGAGTTGACAATCAAAGACACTTCTTTCCATAATCCCATTGTTAAAATCAAGTAACACAGATTTAAATCTACTTTTGTCAGTAGGCTAAGGATATAGTTGTATCGTATGCAGCTTTCAATCATTGGCCCAAGTAAGAAAGAAACCTGTTATGAAAGATTATAGTACTTGTACCCAGTGAAAAGTATTATAGCATTGTTGTAGTCTTCTTAGGGGCCTAAAGACATATAATGTTGTCTAATTGTCCAGTTTAACATATGGCCAATGTCATGTCATCAAGGTTAACATCCTAATACCCTACGATACAAGCTAAAAATGGGTTCATTTTAAGGCATTGAACTAGGCCTACAGATGAGAAAAGGCAGGCAAAAATGTATCCTAATGAAGCTTAGATTTGATTTCAATAGTTTAATATGTTCAGGTCATAATAAATTAtgaaagggatactttgggattttgacaTTGATGCTCTTTATGTAGATCCCCAGAGCCAGATGAACTTGcagataccatttttatgtctctgtgtccagtatgaaggaagttagaggtagttttgcgagccattGCTAACTAGCATCATTAACTGGAAGTAGCTCAgtaactggaagtctatgggtatctactagcatgctagcagacttccagtcatttcactaacactagttagcacTGACTCGCAAAACTAACCTAACTtctttcatactggacacagagacaaacaaattgtatccacaagttcattGGATTCTGGGGAAGTGGATAAAGGGCCTAAATGtcaaaatcctgaagtattccTTTAATAGAAAATGTGTATTCACTGAAGAACCGGAGTATATAAAGTTGCTCAAGTTAGTTTGAATTTGAACGATTTTGGAACATCTCCTTTGATGATTACTAAATTAAGGTTTTGAAATACTGTAAATAGGAATGATATCATTAACAGTTAAagaaaatgggtttccatgctCTCAGATGTATCATTCAGTTCTACAAACCACTGTAGGTTTAAGTGTAATTGCTGATAGGTGCGCTGGTCACAGTGTGTATGGATAAACCATATTTGACTGTTTTAAAACCCTTTTCATAGCATGTAGTATAATGCTTTTGATTTAACCCTGTGTTGTAGCCGTACTGAAAATGATTACCTCTTTTGTTTTGTATCTGTAAGTTATTATCAGGCATCCATCCAACTTTTGTTATTATTTTCAGCTAAATGTATCATCTCAGGTACAATATGGCACACTACTTTCTGGTATTTGTGACAGATGGATGGTTTTAATGTTTGCCTCTTACATTTTGTACAATAAGCTGAGGTAACTGTTAAAAGAAGCAATGACATTCATTTGGTTGTCAGTAAATCTGAGGAGTATTTTTGGGAAGTGGGATCAATTAGTTAGCAAGCTAATTCCGATATACACTCAGTCAGAAATTCTGCGGATCGTAtgcttaaaaaaaatgttaacttGATTTGAGCTAATTTCAGGTTCATCTTTATTAATCAGAAACTCCAGGTTTAAATGAAACTATGAATATCTAGCTGACAAAGTAATTAATCCTACATCATGAAATACACGACAAGGACATATTATTTGTTTTGTATGTTTTTGATTTAACTAATGTTTAGTTGCATTGTTTAGTTTTCTTAgggtaattgaaatgcatttcattacatctagtttgtctgttttgaCTTTCCGATATGTACTTCATAAAAATGCATACAACTTTTCACATTTGTTTAATAAAAGGGGCACATTTTATGACCCTCTTATGTTCAGACAATATTGTTCTGCAATGTGCTGTTtctgaaaaatctgtctgtgctgCTTTTTAGGTAAAGCTTGAACACTTTCTTATGTCTCAAAAGTATCGGTGAGAtgatagatttttttattttattagagGTGGTGCTATGATGCTACTTTTTTTGTATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU781577 lncRNA upstream 6071 22798189 ~ 22799685 (+) True G686378
TU781526 lncRNA upstream 62700 22742855 ~ 22743056 (+) True G686334
TU781500 lncRNA upstream 82741 22722734 ~ 22723015 (+) True G686308
TU781490 lncRNA upstream 90892 22714520 ~ 22714864 (+) True G686298
TU781488 lncRNA upstream 91968 22713526 ~ 22713788 (+) True G686296
TU781615 lncRNA downstream 30007 22839556 ~ 22910729 (+) True G686406
TU781623 lncRNA downstream 104804 22914353 ~ 22915608 (+) True adgrg6
TU781642 lncRNA downstream 113731 22923280 ~ 22923520 (+) True G686432
TU781648 lncRNA downstream 121204 22930753 ~ 22931260 (+) True G686438
TU781657 lncRNA downstream 127623 22937172 ~ 22937372 (+) True G686444
XM_021611978.2 mRNA upstream 293727 22506844 ~ 22512029 (+) False LOC110529619
XM_021611979.2 mRNA upstream 293727 22506845 ~ 22512029 (+) False LOC110529619
XM_036985043.1 mRNA upstream 293727 22507290 ~ 22512029 (+) False LOC110529619
XM_036985044.1 mRNA upstream 293727 22507290 ~ 22512029 (+) True LOC110529619
XM_021614353.2 mRNA upstream 299394 22503872 ~ 22506362 (+) True LOC110531077
XM_021611986.2 mRNA downstream 333 22809882 ~ 22857289 (+) True vta1
XM_036985050.1 mRNA downstream 50465 22860014 ~ 22913425 (+) False adgrg6
XM_036985046.1 mRNA downstream 50470 22860019 ~ 22915654 (+) False adgrg6
XM_036985047.1 mRNA downstream 50472 22860021 ~ 22915654 (+) False adgrg6
XM_036985048.1 mRNA downstream 50472 22860021 ~ 22915654 (+) False adgrg6
TU780646 other upstream 323617 22480323 ~ 22482139 (+) True G685551
TU780557 other upstream 357683 22446771 ~ 22448073 (+) True G685469
TU780597 other upstream 372721 22423058 ~ 22433035 (+) True LOC110529616
TU780379 other upstream 721532 22083874 ~ 22084224 (+) True G685311
TU780265 other upstream 879527 21925284 ~ 21926229 (+) False G685215
TU781664 other downstream 136952 22946501 ~ 22972836 (+) False G686448
TU781666 other downstream 140633 22950182 ~ 22972836 (+) False G686448
TU781994 other downstream 674883 23484432 ~ 23524035 (+) True LOC110529640
TU782829 other downstream 1174896 23984445 ~ 23990999 (+) False LOC110529210
TU782837 other downstream 1174896 23984445 ~ 23990999 (+) False LOC110529210

Expression Profile