RNA id: XM_021611988.2


Basic Information

Item Value
RNA id XM_021611988.2
length 10067
RNA type mRNA
GC content 0.50
exon number 11
gene id hivep2a
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 22970089 ~ 23066952 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctccctctctctctacctctgtctttcgctctcccctctccctctctcagatgTTCTATTCTGGGAAGTTGTGCCAGGAATAATAGCTTCGGCGTCTTCCTCACAAACTGAAAAATCGTGTCGAGGAGGATGTTTTACTCACAAGGTGTCTTCATTTAGTAGCAGCATAAGGCTTTAGAATAGTCATACGGAAGTCGATCTTTTTTTGGTGCTAATTCTTGTTTAATTTTTCACTCTTCAGTCTTGGAGGCTTTTATCCGACAATTAGCGAAGTGTCAAGAGCGTTGTCATAGGTTGTAATTTATTTGGGATTTTACCGGACGTGGGTTTTTGCACGGCACCTGAAGTGTGACACGGCTGTGCCGATGCCCTGGAGGAGTGTGAACGCTGTGTGACGTCCTCGCAAGTCGCTCTCCTTGGCTGCACAACAGGAAACACTTGTGGCCTCCCTCCTTCCTGCGCTCAGAAAGAGGGCGTGTGAAGAGGGTGTGTGCCTGGATAGGCTTGCCAGGACTGCCAGGCAGAAGTCGCCTGTCAAATCCCAGAGTGGTCTGTGTCATCTCCGCACCCTGGCCGAGGGGTCATCCTGATCTCTGAACCCccactcctcaccctcctcccaccagcctgaCCCAGCGACCACCCCACCTTGCACCCAACCAAGCGGACCGAAGACCCCTAAATAGTGCCAGGCTCAATCACCACCTCAAGTCCTCTGAGATCACGCAGgtctTAAGTGAAGATTCTTTTGGAAGTTGTAAAAAGAGAGAAATCaacaagcattttttttttaagaccGATCACGAAAAGATCTTCATACATTTAATGAATTGGACAGAAAATTGGAGGGATGTTAGCAAGTCTACAGTATGATTGACAGAAAGAAAGTGTTCTGATGCAGACTATAGAGGATCTTCGTGACTCAAATGTGGAACAACCCAACAACTTCAGCAATGGAAGGCCCCTTTGTTTAAGATCTCCAGGTGTGACAGCATCTGACATTTGACCTTTGAGAAACCCAACTGACGTCTAGCGGGACAATGGAGCCACGTGAATCTGCTGCTGGACCAAAATGCACCAAGGATCCCCGGGAGAAGCTACAAAGGAAGTGGGTCTCTGAGCCCTCAGCTGGCACAAAAAGAAGCACTTTTGCTGACCCGGAGGAAAAGAGGCACTCGCATCGCGAAATCCTTCAAAGTGGTGCCAGTGGCAGCAATATTACTGGCTCAGCACGAAAGTATGGCTCTGGGAAGCTGCTATCAACTGCAATGGGTCAGTCATCTCAAGATAGTCAGTACGCACAGGCTTTCCCTCGTACTTACTCCTACCAGCTACCACAACCGTACCCACAACAGCCCATGCAAGAGCGCTTCCTGTCCGGAGCCAAGCCACAGCCCGGTCTGGAGGCCCATGCCTGGCCCTTCGCTGGACAGCTCCCATCCGACGACATATTCCCTGGACACTCCCGTGCCCATGGAGTTTTCCCTCGTCAGAAATCTCCCAGTTTACCCAGTTCTTTTGGCCAGTATTCCCAGTCAGGGCCGGAGCCACCAGAAGAGGGATACAAGAAGGAGCAGAAACCCAAGAAGCCAGGGAAGTATATCTGCCACTACTGTGGAAGGGCTTGTGCTAAACCCAGCGTGCTGAAGAAGCACATTCGTTCACACACTGGGGAACGCCCCTACCCTTGTGTCCCCTGTGGGTTCTCATTTAAAACCAAGAGTAATTTGTACAAACACAGGAAATCTCATGCCCATGCCATCAAAGCAGGACTAGTCCCATTCTCCGAACTGGCAGTTTCACGCACAGACATGGATCAGGCATCCTCAGTGGGAGAGACGGAAGTACACTCAGACGGTGAACAGAGCACAGACACCGACGAGGAAACTGCAGAGGCCTCCATGTTAATGGACAAATGCAGCCCTATTCCCCAGATATCATTTGAGATGGACAAAAGCACAATGGAGAAGGGTAGGGAGCCGGCATATGCTGACTCAGCTGAGGAGCTAGCTATGGCTTCCATGAAAGTGCCTATCCTAATTGTCCCAAAACAAGGGGTCCCACCAACAGCATTGGAGTGCCCCCCATTCACGGACCTCAAGGCTTCTCACATCAGCTCCCAGGTTGGCCGCGTGGATGACTCTCCCACTATCAAACAGAGACTGGCTCTGAGACTGACAGAGAAGAAGGGATCACAGGACTCAGACCAGCAGTCCCAGCAGTCCCTGAACCTTCTGAGTCCACACAGCAAAGGCAGCACAGACTCGGGCTACTTCTCCCGTTCAGAGAGTGCAGAGCAACAGATCAGCCCTCCCAACACAAACGCAAAGTCCTATGAGGAGATCATGTTTGGTCGGACTTGGTATTACAAACCTAACTCTGCTAGATCTAGACAATCCATTGCAGTAGGCATGGCCACTGTTGGCCAAGACACTAACATAGTAATGGGGAAGATATCTGAGGATCATATTTTTTTCCGAAATGATAGCGGTGAAGTGCAACTATTAGCAGGTGTTGACCCTAAGCAGTATCCCACAGGCCCTTGCCAAAGCAACACAGGTCTACTAGAGACTCCTTCTGATTCAGGGACACTCATTAGGAGTAACTCAATGCCAACATCCTCCCCGACCAACCTCAACGTCCCACCGGGGATAAGAGTGAGCCACTCCTTCGACGAGATGATGACCTCTGATGATGTCTTCTACCCGGGTGCTGCCGGTCTGAGGAGGCTTAGGAGACAGGCAGCTTTTGAGCATTCAGCACATGAAGGGCATGGCGACTATGAAACCTATGGACACGTTCCCAAGAACGCAGCCCCATCCGTGGCATTAAAGCTAGGGGAGCGCAGTCCTGTGGTGCCAGAGCATACAGCATACAGCCCATATGGTACTAAAGGGGGAATGACAGAGATTGCCACTCGTAAACGCAGGAAGGAAAAGAGTGTAGGAGATGAGGAGGATGGCCCTGTCCAGTACGACAGTAGTTGTAGTGGCTCAGTAGATATGGTCAGAGATTATGATTCAAAACAAGGTAGTCAAGAGGGTTCAAGGGGGACACCTACTGGAAAGGGATCCATGGGATCTATGTACAGTGCACATAGCCAATCAGACAGTTTTGAAACATGCTGTAGTAGCATGTGCTCAGAGGATGTAGTGCTAGTCCCAGACTCTGACAGAAAGGCAGCTGGCAATGTTATATCTGTCATTCAGCACACCAACTCACTCAGTAGGCCAAACTCCTTTGAGAAGTCAGAGTCCTTCGAGCACCCAGCCTACCTGCAAGATAAACCCTCCAGCCAATACTCAGAGCAGTCAGATACAGAGAACATAGAGGATGTGCAGAGCCCAGAGTTTATCCTGAGGTCTGAGAGCATGGAGCTGCAGCAGCAAAGCAACAGTGATTTAGTTTCATCCAACCAGCCCTGTCACATGCCCCCCAAACTGGTACGTCAGCCTAACATCCAAGTGCCTGAAATCAGGGTGACAGAGGAGCCAGACAAACCAGAGAAAGAGCCTGATGTACCGACCAAGGAGCCGGAGAAGCACGTTGAAGAGTTCCAGTGGCCCCAGAGGAGTGAGACACTGTCCCAGCTACCTGCGGAGAAGCTGCCTCCTAAGAAGAAGCGTCTGCGTCTGGCAGACCTGGAGCACTCCTCTGGGGAGTCCAGCTTTGAGTCTTGCACCAGCCTGTCCAGGAGCCCCAGCCAGGAGAGcaacctgtcccacagctccaGCTTCTCTATGTCCTTTGACAGGGAAGAGAGCCTAAAGTCTGTGTCACCGTCCAAGCAGGAGGACTTTGGCAAGCAGTCTGAGTACAGCGGAAACTCTCTCACTATCCCCGGCcatcaccagcagagggagatGCGACGCTCCTCATCAGAACAGGCTCCCAGCGCTCTGCCCACCGAGATCCCAGAGATCCGTAGCAAGTCTTTCGACTATGGTAgcctctcaacatcatccagacagggagaggtttacTCCAGTGCATCAGCCATGAAAGATCGGAGACGGGGCTACCTAGTAAGGCAGGCATCCCTCAGCGTTTACCCTGAGACTGCGGTGCATGAGCATGGTGGTCTCGAAATTACTGTCAAGCAAGAGCACTCGGACCATGGACCTTCATCTTGGCAGAGCCCCCCATCCTCTCAAAGTTCTCTCGGTGCATCAGCCAGCGAAGTAGCAAGACCCAAGAGAGGGTCACATCATCATCTTCTGCAACAGAGCATTAGTGAGGACAGCCAGGACGACTCACCACTGTTCCAGAAGTCATCTCGTCTGCCAAGTCAACAGTCATCTGAGGGAGAGCATCCAGGTCACGAGCTCATGAGCAAGGAAACGATGCAATACTCCTCACTCCAGAACAGCTTGGCTTCACTGCCTTTCCTGCCATGTCAGCCGGGTCTGTTCTGGCATCCCGAGTCCACACAGAGACATAAGCAGCATCTGGCTTTCCAGCCACACCAGTTACAGAAACTACATATCAGACAGCCTAGTCTACCACACATGATCCAGAAATCCAACCCACCTCTTAATCAGCTACAGCAGATTCAGGAGCAATGCGATGCAAAAGCTGACGGTGCTATCAGTCAGAACTATCAGTATCCCTCCAGAGCCTCCCCGCAGGCCCAGCATTACGGATCTCTACCGTCTAAAGTGGCCCTCACCGAGAGCACGGTGCTCCTGCAACAGGTCCAGCCAATCTTCGCCACTCAGAATGCAGGTTCACAGTCATCTCTCCCAGGTATGCTAGTCCCCGTTAGGATACAGACTCAAGTGCCATCTTACGGAAGTGTTATGTACACAAGTGTTTCACAACTCTTAGCTAACCATGGCCAGAGCACTTATTCAGCAAGAGTCATATGCTCAGAGAGTGTATCATCTAGTTCACCCACAGGTTGCACTGTTTCAAAGCAAGGCGTTGGCTTCAATTTATCTCAGATCCTTGGTCAGTCTGAGGGAGCTCTACGTTATCCACTGTGGAATATTCCAGATCTGAACACTGAACACGGGAGACTGAACACGGGAATTCCGCTGTCGTTGACATCAGGAACCATCTCCACCACGGATGCGTCCTCCTGTATTGGGGGAAGCAAGCGGATGCTATCACCCGCCAGTAGCCTGGAACTCTTTATAGAGACCAAACAGCAGAAACGGGTCAAGGAGGAGAAGATGTACGGTCAGATTGTAAAGGAGCTGAGCGCTGTCGAGCTGAGTGCTTCGAAAGACAGCGGCAAGTTATCAAAGTGTGCCCCTCTGAAGAGCGAGGGTTCAATGGACGATCAGGAGAGGATGTCCTCCTCCCCACCAGCAGACTTCCCCTCCACCAAAATCCCAGTGCGTTCCAACGCACCTCACATACCTGATGTGCCACCAGCTGACAGCTTCACTCCCCCTCTGCAAATCGTGACGGACTTCCCTGGTGGCAGAGAGTCCCCAGAGGAGCTGGACGTAGATGACTCCACCCCAGAGGCTAGCTGCAGCCCACAGTTCATGGTCTCCTCCAGTGACACTCCAGAGGAAGCCAAGCCACTCATGGGCAGCAAGATACCTGTCAACATGCTGGTGCAGCTGGCTGCCAATCAGAGTGGGGGTGCTGCCGGAAGCACTCTAATGCTCACAGATCTGGCCGACGTTCAGCAGTTCTTTCAGTTCCCCAGTCTTCGCACGACAACCAGTGTCAGCTGGTGCTTCCTGAATTACACCAAGCCAAACAACGCTCAGACGACTCCCCTGACTTCTGTCTATGGCTCCTGGTGCGTCAGCTCCTACAACCCCAACCCTCTCAGCCTCAGCACCAAGGCTACTCTGGCCCTGCtctgctccaagcagaggaagaACACAGAAACCTACACGATGGCTGCTATGTATCAACCCAGGACTGGAAAACTTGTGTCCTCTCTTGCTTGGAAGCAGAAGTTTGAACAGATGAAGCCAGAGCTCATGCAGCTAGATGTGAGCAAATATGGGAAGAAAATCAAGGGGCTGAGCTCCAGGGATCGAGTCAAGGAGGACCACGGAGAGAAGGAGGCCTCCTCAAAGCAGGCTGAGCCCACTCGCATCAAAATCTTTGAAGGAGGGTACAAATCCAATGAAGACTATGTTTACGTgcggggaagaggaagagggaagtaCATCTGTGAAGAGTGTGGGATCCGCTGTAAGAAGCCAAGCATGCTGAAGAAACATATCCGCACACACACCGATGTCCGGCCGTATGTCTGCAAGTTCTGCAACTTTGCTTTTAAAACCAAAGGAAACCTGACAAAACACATGAAGTCGAAAGCCCACATGAAGAAGTGCTTGGAACTCGGGGTGTCAGTGACATCTGTGGAGGATCCTGACGCCGAGGAAGCTGACAATGGCGAGGATGGCCAGAGGGAGTCTGGGAAGATGTCAGGCATTATGGCGGACCACCAGTTCTCAGACGCTGATGATTCTGATGGTGGCGAGGATGACGGGGATGAGGTGGATGATGATGAAGACGATGACGACGATTACGATGGCGACTCCACGCCGAAAACACGCTCCAGAAGCACTAGCCCTCAGCCCTATGGCATACCGTCTCTCTCCATCACAGCTGTGGCGGCCTCTCAGAGTGCCTGCTCCTCAGACCTGCTGGGCCACGGCCCCAAACCTCCCATCTTCAGCTACTTCACCAGCCTGCCCAGCATCCAGATCACCCAGCTCATGGTGCCTAGCGAGCGTGCAGGCCAGGGCCAGATGGCAGAGTATCAGCGTCTGCTGCAGGGCGCCCTGGGCGAGGACTATAAGAACAGGCTAGACATACCCAGCTCCATGGACAAGGACTTTGGCCTGTCCACAGATCACAGCTCCTCCTCCTTTGACCTGTCCCcgtctcgcctctcctctccaggcctgGGGTCCTCCCCTCTCCGAGAGccctcccccaccacctcctcACGCAAGTACCTCTCCCCCCGACGGGACCTGTCCCCCCGTGGCCGCCTGTCACCCCACAGAGAGGTGTCCCCTCTCCGGCACATCTCCCCCAAGAGAGACATCTCCTTCAGGAGGGACCTCTCGCCTCGGAGGGACCTGTCCGCCAGAGGTCACCTCTCGCCCCTGTCCCACGCCGGACGCCCCACGTCACCGGGCAGGGACCTTGCGGGCAGGAGGGAGCTGTCTCCACGGAGTCACCACCGGGGCATGATCAGACCTGTCTCCCCCAGGAGGGGAATGCACCATCACAGTGCCCCTTGGAGTCTAAGTCAGCACCTAGACTCAGAGATGGTGTCACTGGGCCAGCGCAGTAGGAGCCACTCAGAGATGGAGACAGAGCAGAATAAGGGTTCCCCTCCCCACAGCAGCCAGGAGTCCCCTCTGCCCCACCAGGGCCTGTTCAGCCACCTCCCTCTGCACTCCCAGCAACAGGTCCGCACCTCCTTCCCCATGATCCCCATCGGCGGCATCCAGATGGTGCACTCCGTgcccacctcagtcaccggcctGACCCATCCCGCCCGCCTCCCCCTGCAGAAGAGCACGTCCGAGGAGTCCAGCACCAGCGAGGTCTCCTTCCACCTGGTcgagggaggaggagggtccagGGGTTCCACCGGGTCGTCCGACTCACCCCAGCGCCAGGAGAGGATGGTGTCATCATCCTTTTCCTCTCGGGGGACGCCGGTCCCCTCCCCTGGCCCGTCCTTACCCTGGTCAGGAAGTCGCCAGGACAGCGCAGACATGTCAGACAGCAAGGACATTAAGCAGCAGGAGGAAAGCATACAGACTTGTACCAATGCTATCGCCTCGCTCCGCATCGCTACAGAACACGACACTCTGGAGAAGGGCATGTTGGTGTGCTCTTCAGACGCCCATCAGAGACACCCCTCCCCACTGCCTCACtcctctcactccccttaccCCAGCCCTCAGGAGAGAAGCTCCAGCATCATTCAGCACTTTAGTGGCCTAGAGGTTAGGCAGTCCCCGGACGGCcactctgcctcccctctccccctacacTCCAGCTCCAGCTCGGAGACCTCCCTGCCAGCCACATCAAAGGGCCCGGCGGGTTCCACGGCAGGCCCAGGCCACTGTGCCAAGGAGAGGTCGCCAGGTCAACAAAGCCCTGGGGAAAGACCAGAAAGCACAAAGAGAGGCAAAAATATATTAAAGGATGCCACCGAGAACAGGTGAACATTGTTAAAAAGGGAAGGACGTGCAACGCAAAGACATCAACCCGTacaattgcacacacacacacgacgcgcacacagagagacagacatttaaacacacacacacacacacaaacaagtctTTAAACAAGCAAATTAAGTAGATACTCTGTAGTTTAAATGTATAGCATGCCTTTTATAACCTGGTTTGCTATTTTAACAATTTCTTTCTTATTTAAATTTTCAGagaatatacatacagtatgttaactTATATATGAGCCTGACCAAATTGATGATGGACTCCAGTCTGGTACTTTTAAATGTACAGATGTGTGTGCCTTTTCTTTACTTGTTGCTTATATTCTTATAAGCATATTAAGCAGGAAGATATGTTAATATATCACGTTTGTGTATCAGCTTTGTAATAAATGCAATTTCTCGTCTTTTTTAGACACTTGAGTCTGAATGATGTGAAGTATCAATATATGTAAGGTTGcactaaaacatatttttatatGAGTGAAATGAAATGGCTTTTGTGTACAGCAGCAATTCTATAATACTATTTATTGTATCATGTTtcataaaatgtacatttttcttAATGTTGTGGATGCCTTTTCTATGTAAAGCATGGGTTTTGCTATGGCATAATTAGAGCAAACAATATGTACACTGTAAAATGGCTTTATATGTTAGAAGTATTTATATACACCTAAGTGAATGCACTTTACTTGgaggtatatacatatgatacaATTTACCAGAATATATATctagtatataaatatatatatatatagtatataaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtgcacTTAGGTTTTAGATTGACACCCACATACAGTATGGTAGTTAGTTCTAAATGCTTGGACCTTTTTCTCTCCTGTTCGCTGGATTGGCTACACTAGTTgtgattttacattttttacaaaaaGTAGAACTGTTCAGCATTAAGTGAATCAATgtgcttttattttttgttttcatTCAACGCTTACTGAAGTAGTAGTGAAATATTAAAGATAGTTTGATCTTCTGTGAATCACGTTGCTTGAAGTACTTGATTTATTGATTAGTATGGGGAACATTCCAGCTGATGTAAATATTGAATGCCCATGAatttgtatacacacacacacatacacagacgcatgcacgcacgcacgcacgcacgcacgcacacacacacacacgcacaaacacacacacacacacacacacacacacacacagagattagTGAGACACCAGTGTGTTACCTACGAGGAGACCCCAtcggcttacacacacacagtcatacacatttATACATGGAAAGAGTTCATTCTGGGCAATGACGTCAgttcatcaacaaaacaaaatatatgaaATGCTTGTACACACAGATATCCAGAACTCTGAAAAATGCACCTTATGTTTCCTAAATTTGGGGGGGTACTATCCAATAATGCTGTATCTCAATTTTGGAACTGGGATTTGGAATCCAGTTGcttttaaaaacctgtttgcgAATAAACAACCTAAACGAACAGGAGCATTCAGCCCGTCACtcgtgtgtgtatatctgtattTTGTATGGTGTGTATAAGATCTGTGTCATTTACTCTTTGGACATTTTTGTCACTAGTCCTTGGTATTCACCTAACTGTATCAACATGTCTTTCAAATCTAAGGTATCAAAGCACAAATCATAgtatagaaagaaaaaaaagaaagatgtTAAACATACATAGAAAAGGTAACATTGTGATGTTCAGTGGAAAGTACAATATCATGGAAGACCCCAGTTTCAACAATTAATCACAGTGCAGGTGGAAATAAAACGGATTGTTGTTTTCAAATAAATACCACTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU782194 lncRNA downstream 29606 22940030 ~ 22940483 (-) True G686913
TU782193 lncRNA downstream 30328 22939470 ~ 22939761 (-) True G686912
TU782187 lncRNA downstream 39517 22930200 ~ 22930572 (-) True si:ch211-202p1.5
TU782179 lncRNA downstream 54239 22913291 ~ 22915850 (-) True G686899
TU782178 lncRNA downstream 54465 22913291 ~ 22915624 (-) False G686899
TU782295 lncRNA upstream 75474 23142386 ~ 23144425 (-) True G687007
TU782311 lncRNA upstream 89977 23156889 ~ 23157099 (-) True G687016
TU782312 lncRNA upstream 90286 23157198 ~ 23157609 (-) True G687017
TU782332 lncRNA upstream 97858 23164770 ~ 23165125 (-) True G687031
TU782335 lncRNA upstream 107059 23173971 ~ 23174316 (-) True G687034
XM_021611987.2 mRNA downstream 20018 22929691 ~ 22950071 (-) False si:ch211-202p1.5
XM_021611982.2 mRNA downstream 166428 22789862 ~ 22803661 (-) True nmbr
XM_021611981.2 mRNA downstream 392577 22575120 ~ 22577512 (-) True cited2
XM_021611980.2 mRNA downstream 407760 22533156 ~ 22562329 (-) False txlnba
XM_021611995.2 mRNA upstream 79546 23146458 ~ 23151249 (-) False adat2
XM_021611996.2 mRNA upstream 79546 23146458 ~ 23151249 (-) False adat2
XM_021611997.2 mRNA upstream 79551 23146463 ~ 23151249 (-) False adat2
XM_021611998.2 mRNA upstream 79551 23146463 ~ 23151249 (-) False adat2
XR_005052838.1 mRNA upstream 79551 23146463 ~ 23151249 (-) True adat2
TU781111 other downstream 809047 22159030 ~ 22161042 (-) False G685953
TU780899 other downstream 1045181 21920427 ~ 21924908 (-) False LOC110529207
TU780900 other downstream 1045181 21920427 ~ 21924908 (-) True LOC110529207
TU779858 other downstream 1490886 21478766 ~ 21479203 (-) True G684844
TU776244 other downstream 4177952 18791230 ~ 18792137 (-) True G681659
TU783285 other upstream 549995 23616907 ~ 23621246 (-) True LOC110529643
TU783300 other upstream 568397 23635309 ~ 23637408 (-) True G687890
TU783403 other upstream 687920 23754832 ~ 23756910 (-) True G687979
TU783552 other upstream 921187 23988099 ~ 23988854 (-) True G688109
TU783833 other upstream 1358151 24425063 ~ 24425553 (-) False G688366

Expression Profile