Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_021612006.2 |
| length | 936 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 11 |
| gene id | tatdn3 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048572.1 |
| NCBI id | CM023226.2 |
| chromosome length | 91622588 |
| location | 23202244 ~ 23208093 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0000737 | DNA catabolic process, endonucleolytic | biological_process |
| GO:0016888 | endodeoxyribonuclease activity, producing 5'-phosphomonoesters | molecular_function |
| id | description |
|---|---|
| K03424 | tatD; TatD DNase family protein |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU781800 | lncRNA | upstream | 11197 | 23190807 ~ 23191047 (+) | True | G686569 |
| TU781799 | lncRNA | upstream | 12127 | 23189915 ~ 23190117 (+) | True | G686568 |
| TU781791 | lncRNA | upstream | 34596 | 23166086 ~ 23167648 (+) | True | G686560 |
| TU781789 | lncRNA | upstream | 40080 | 23161564 ~ 23162164 (+) | True | G686558 |
| TU781788 | lncRNA | upstream | 40726 | 23161313 ~ 23161518 (+) | True | G686557 |
| TU781815 | lncRNA | downstream | 31614 | 23239707 ~ 23249738 (+) | True | vash2 |
| TU781858 | lncRNA | downstream | 44116 | 23252209 ~ 23254320 (+) | True | G686602 |
| TU781934 | lncRNA | downstream | 148470 | 23356563 ~ 23420985 (+) | True | G686675 |
| TU781968 | lncRNA | downstream | 202346 | 23410439 ~ 23415293 (+) | True | G686708 |
| TU781984 | lncRNA | downstream | 232925 | 23441018 ~ 23441270 (+) | True | G686724 |
| XM_021612001.2 | mRNA | upstream | 20862 | 23177638 ~ 23181382 (+) | True | atf3 |
| XM_021611992.2 | mRNA | upstream | 46576 | 23151281 ~ 23155668 (+) | True | pex3 |
| XM_021611994.2 | mRNA | upstream | 57707 | 23076384 ~ 23144537 (+) | True | aig1 |
| XM_036985049.1 | mRNA | upstream | 286590 | 22860025 ~ 22915654 (+) | False | adgrg6 |
| XM_021612002.2 | mRNA | downstream | 1135 | 23209228 ~ 23220811 (+) | True | flvcr1 |
| XM_021612014.2 | mRNA | downstream | 13436 | 23221529 ~ 23249786 (+) | False | vash2 |
| XM_021612012.2 | mRNA | downstream | 13437 | 23221530 ~ 23249786 (+) | False | vash2 |
| XM_021612013.2 | mRNA | downstream | 13437 | 23221530 ~ 23249786 (+) | False | vash2 |
| XM_021612015.2 | mRNA | downstream | 13437 | 23221530 ~ 23249786 (+) | False | vash2 |
| TU781664 | other | upstream | 229408 | 22946501 ~ 22972836 (+) | False | G686448 |
| TU781666 | other | upstream | 229408 | 22950182 ~ 22972836 (+) | False | G686448 |
| TU780646 | other | upstream | 720105 | 22480323 ~ 22482139 (+) | True | G685551 |
| TU780557 | other | upstream | 754171 | 22446771 ~ 22448073 (+) | True | G685469 |
| TU780597 | other | upstream | 769209 | 22423058 ~ 22433035 (+) | True | LOC110529616 |
| TU781994 | other | downstream | 276339 | 23484432 ~ 23524035 (+) | True | LOC110529640 |
| TU782829 | other | downstream | 776352 | 23984445 ~ 23990999 (+) | False | LOC110529210 |
| TU782837 | other | downstream | 776352 | 23984445 ~ 23990999 (+) | False | LOC110529210 |
| TU784088 | other | downstream | 1774636 | 24982729 ~ 24984826 (+) | True | G688613 |
| TU784318 | other | downstream | 1850860 | 25058953 ~ 25061450 (+) | True | G688823 |
