RNA id: XM_021612013.2


Basic Information

Item Value
RNA id XM_021612013.2
length 5727
RNA type mRNA
GC content 0.44
exon number 8
gene id vash2
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 23221529 ~ 23249786 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTTTGTTGGTACAGCCAATGAAATCATCCAGAACACGGCTGGCTGCCGGGGTTACGATAGGCAGAATAACATAGTGAAATCATTAATCCCAAAATATTAACCATGTGATGGAGGGTTAAATTACCAAAGAGGAGTTTTCATCATGAGGACGAAGCTTTCGAATAGACAGCCTACTCGATATTGGGGAAATATGTAGTAGACTACGAACGGAACGGAATGCATAGCAGAGGTCAGCTGTGGGAGTCAGTCGCCCCCGCAGTTTTCTGAGCAAAGGATGAAGTTACAGAGGAGGAAGCCAAACGTATCCTTTATATGGATGTACGGGAGTGGATATTGGTACAGCAAGATGTTTGTTTTAGCAAACCTGTGTTATTGACAAAGGCTAAGCAAATCATCACGGGCTGCCATCTGCCAGGACCCCCACTTTTGAATTGAACAATGACTGGACCCAACGCCACTAGCACTAGTTCACCTGCAGCTAAAATGGGGAGGCACCGATCCAAAAGCACCAGTGGCAGTACGTACTGCATGTCGAGCCCGGGTGCTGAATCTGCCTCCCTTAGCACCCCCAACAACGCTGGACGTTCatcgggagaggaagaggagaaagatggGGGGGTGCTATTTTACGTGAACAGAACTGGTTTTCCCATTGACGGTGTCACTTGGGAGAGGATGTGGACTCATGTGGCCAAAGTACACCCTGATGGACAAGACATTAGTAAGATAAGGAATGCTGCATACCTTCCTAAACACCCTGTGCCATCGGTCCCCAACTTCAAGCCCACCATGTCTGTCCCTGATTGGCTGCTGGCCATCCAGAACTATATGAAGACACTGCAATACAATCACACAGGAACTCAGTTCTTTGAGATAAGGAAAACTAGACCATTGTGTGGGTTGATGGAGACTGCGAGGGAAATGATCAGGGAATCTCTTCCAATCAAATGCCTTGAAGCTGTCATCCTTGGAATCTACCTGACCAATGGGCTGACCTCGGTGGAGCGTTTTCCCATCAGCTTCAAGACCCAGTTCTCAGGTAACCACTTCCACCACGTGGTGCTGGGCGTCTACTGCAACGGACGCTATGGCACACTGGGCATGAGTCGCCGCCAAGACCTCATGGACAAGGCCCTGACCTTCCGCACGCTCAGCGACCTGGTGTTGGAGTTCGAGGACTCGTACCGCCGCTACCAGCACACCCTGAAGAAGGTGAAGATCGGCCTGTACGTGCCCCACGACCCGCACGTCTTCCAGCCTATCGAGTGGAAGTACCTGGTGCTCAATGCCGCCCGTctggggagagaggacatgaggaaGGAGCTGGAAAAGCATGGCCGAGACATGAGGATGAAGATCCTGAAGTCGTCTAGTGCCCAGTCTCCCATCAAAGAACGGAGCAGAGGCAAGTCTCTCTCCCCCCGCCGCCGACAGAGCAGCCCCCAAAGACGCCACATCCACCGGAGAGACAAGTCtcctgcGGCTCTGGATCGGAAACCTGCAGAACTCAGCACTTTGACCGACGGCTACCAGATCCGCATCTGAGACTCCTTGGAACTGGACTACATTCTCCTGGTCTCCACTCTGACCACCCAGTCCGCCTCCCTCACATATGTTCACCTGACATTGTGTATATCATAATTCTAAAGTATTTATAGGGTTTTGCCAGCCTCTTCTATAGGGGGAAGATGATGACATTATGCTCAGTGCTAAACTGGAGGCTGACATCCAGTAGGAACAAATACATTGAATATATCAAAGGTATATATTTCCTGTCCTTCATGACCAGACGAACAAAAGCCTGAACAAGAGGTGTGTTTCATTATACACCTCCACACATGCATTAGCCACATTATACATTTGCATACATATCTATTATGTTTTTAATGAAGGACTGATGCCTAAATTGCATGAAGACATCATATCAAGACCTCTCATGCGTTTAGAGAAGTACATATGTTGGATTCTCTACATCGTTTTTAAAAAAATCAGTTTTTGTATAGCCTGTGTGCTTTTGTGTAGGAGAGCAACAGTCACATTTCGTTTACTTCTACAATGTGAAGATTCGTTTTTAAAAACAGAATCTGTGGGTTAAAAAAATAGCCGACAGTATGTTGACATTATGTAAAAAGGATCAAATAGTGTGACTGAtcatctattttttttttcaatataaTTAATATATAGACTGAACGGTTGTTGTAATGCCTAAGCCTGTAGAGGATGTTAAGTAGTTATCTGCTGGGCTGAGCTGTAGTCCGTGTGATGATGTGGGAAGTGAAAGGGTGAGAGAAGAGTTGGAGGAAACAGGAGGTACTGTAGGCTTTAGGtgaggggaacagagaggggcCAAAGACCAGGGCAGTCAAGCAGAGAGCCTGCTGAGTACTCTGCTAAACCCCAGCCCTGACACTGACTCTCGGTTAGATTAtcccccctgtctctgtctctatagacCCTCCTCTCTCACAGATACAGTGCTGGgcctggtttcccaaaagcattttaAGGCTAAGTTCAACGTTAGAACCATCGCTtatgatgcttttgggaaaccaggcCCAGATCAATTAATCTTTTAAGGAAATCAAAGCTTGTGACAATGATGCTTTGGAGCTTAGCCAGAACATTACCTTTTTAATCCCAAGAGAATTTGACCGTGACGTGTTGCTTCAAAATGTCAACTCTGTTACACCTCAGCATACAGACGTATACGAAAACATGTCTGATAATATTATGTAGCTCCTAACCTGAGGCCTTTCTGAATCCTATCACAGAATCTTGAAGTTAAGAATGCAAATACTGAACTGAACACCACAAGACAGACACATCAGTCAAATCAAGGCTTCTATGCCATCTCAACTGCCATGATGCGGTGTTGAAGATtgtttccatttttttttgtAGTATTCAAAAGTCATCAGATATCCAGGAGGGTGCCAACTGAACAATATAACATTTTATAGCTTTTGGTTAAACAAGCTATGCACATCAAAGGGAAATGATAAATCATTGTATGTCTTCCTCAATCTAAATAGTTTCGAGATTGCAGCAGAATTGAAATCCAGTCTCATTTTCTTGAATCCTGAACGAGCTGAGAACATATCAGTTCTTATGTTTctaattaaaatgttttattctaACGATCAAATTGTGAATGGTGCTGCTAGTCTGACAGTATACCATCAAGGCCAACACTATTGGCACCAGCCGTCTGAAAGACTATAAGCACAAAATAACCAGCTTAAtatacatggccaaaagtatatgTATTGGTGAATTCGGCTgtttcagtcacacccgttgctgacaggtgtataaaatcgagcacacggccaagcaatctccatagacaaacattggcagtagaatgaccaatactgaagagctcagtgacttcaatgtggcactgtcataggatgccacctttccaacaagacagTTTATCAAATTTCTGCCGTGCTagtgctgccccggtcaactgtaagtgctgttattgggaagtggaaatgtgctgaagcgcgtagcacgtGAAaaccgtctgtcctcggttgcaacactcactaccgagttccaaactgactctggaaaaggcatacagtatacaatgacattctagacgattctgtgcttccaactttgtggcaacagtttggggaagcccctttcctgtttcagcatggcaaagcacaaagcgaggtccatacagaaatggattgtcggtgtggaagaacgtaactggcctacacagagccctgacctcaaccccatcaaacaccttgtggatgaattggaacgccgactgcgagccaggcctaatcgcccaacatcagtgccgacctcactaatgctcttgtggctgaatggaagcaagtccccacagcaatgttccaacatctgacGGAAAgcgttcccagaagagtggaggctgttatagcaacaaagggggaccaacttcatAGTAATCGCCGTGATTTCGGAATGAgatgacgagcaggtgtccacatacttttggccatgtagtgtatgacTTTGGTTTTACAATCCTCTATAGAAGCAGAATGTGCTTCACTTTTACACAATACAATTGTTTGTCAAATCTATACAGGCTAGGTTTAACATTCTTACTGTTAAACACTTACTGTTAAACACTCTTTTCaatatgcattgcggaagttcagctttacagcgtGACTGAAATTTGAAGGCAATGTCAGCTTTAGTGGAGACTGCATTTACCATACCCACTGCATATCTAACTCTTCAGCTTTCCAGATTGATTAGAACCCTTACTGGGAGGAAAGACTGCTTTCACTGCTGCAAATCTGGGAACTGAAAGATAATACTCTTAAGTGATGTAGCTAAATTAGAGTTGTGCTCTTAACTGTTTAGTGTTGAGCTAAATTGTGTTGTGGCTGAGTTCTATTGGTGATTATTCGCTGTTTCTTGAACAAATCTGTTACTGAGTGCAGTGTTTAATCGTGCTGGTTGTTGTTTTTATGACGTGGTGAAAACACtttgttgtgatgatgatgatgatgatgatgatgatattctTTGGACGAGGTGTGATTTTTAAAGAAGCACACCACATTGTAGCAGTATCATTTTTCAAAGGTCTTGCTATGTTTGTACTGTTTGACCACTGAATAGGCTTGAAAAATGAAGTACCATCCAATGGGATAATGGTTAAAGAAAAACAGTACCACTCATGACTGTGGATTTCTTTTATCCATTTTGTATTTACCAAatggtgttttaaaaaaaaaaagaaaagaaaaacaagtTATCTGAATAACTGCACAATATGAGTAACCTAAACCAGCTACCACCACTATAATATACCACCACCTTCTGCATTTAGTGGTTGATAACTTGAAAGGCAATGATGTGCTGTTGGGACTAAGTGTTACTGAATATTTAGGTGTTTTCAAAGCATGATGTGGACTGTGGAACTCTACCTTTGAGTCACTGCAATTCAGCGTTTTAGATGAGACTGCTTTTCCTGTATTAAGGTACGTTTCATGAGGAGTGTTCTCTTGGCCTCTTCTCGTAAATGGGAGTGTACTAGGACTCTGGGTGTTAAGAGTGTTCTCTTGGCCTCTTCTCGTAAATGGGAATGTACTAGGACTCTGAGTGTTAAGAGTGTTCTCTTGGTCTCTTCTCGTAAATGGGAATGTACTAGGACTCTGGGTGTTAAGAGTGTTCTCTTGGCCTCTTCTCGTAAATGGGAATGTACTAGGACTCTGGGTGTTAAGAGTGTTCTCTTGGCCTCTTCTCGTAAATGGGAATGTACTAGGACTCTGGGTGTTAAGAGTGTTCTCTTGGCCTCTTCTCGTAAATGGGAATGTACTAGGACTCTGAGTGTTAAGAGTGTTATTTTTTATACTCATGCCACTGGTGCTGCCAGTTGGCTGGTATTATTCTCATATCTTTCTGGAAAGGGCTGATCTATTTGTCCCATTGGCTGAAAAGGAAAAGTACTGATGGAAGATCAATAGCAGAACAAATGGTAGCATTTCTTACAGCACCACTATTCTATTGAAATGAGACTTTAGAATCCGCCCCTGGTTTTCTCCATGTATGATGATGACAGggtgatttttgtattttgaccGCTGGTGGAAGATAATGTCCTCCCAACTCCTACTGTTACACTGATCAGTTGACAATGGTTTTTATCAACTCTACCATGTGTTGTAATAAAAAATGATTTATGTTTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU781800 lncRNA upstream 30483 23190807 ~ 23191047 (+) True G686569
TU781799 lncRNA upstream 31413 23189915 ~ 23190117 (+) True G686568
TU781791 lncRNA upstream 53882 23166086 ~ 23167648 (+) True G686560
TU781789 lncRNA upstream 59366 23161564 ~ 23162164 (+) True G686558
TU781788 lncRNA upstream 60012 23161313 ~ 23161518 (+) True G686557
TU781858 lncRNA downstream 2423 23252209 ~ 23254320 (+) True G686602
TU781934 lncRNA downstream 106777 23356563 ~ 23420985 (+) True G686675
TU781968 lncRNA downstream 160653 23410439 ~ 23415293 (+) True G686708
TU781984 lncRNA downstream 191232 23441018 ~ 23441270 (+) True G686724
TU781990 lncRNA downstream 196528 23446314 ~ 23446647 (+) True G686730
XM_021612002.2 mRNA upstream 719 23209228 ~ 23220811 (+) True flvcr1
XM_021612006.2 mRNA upstream 13437 23202244 ~ 23208093 (+) True tatdn3
XM_021612004.2 mRNA upstream 13574 23202244 ~ 23207956 (+) False tatdn3
XM_036985055.1 mRNA downstream 118523 23368309 ~ 23405523 (+) False LOC110529639
XM_036985056.1 mRNA downstream 118523 23368309 ~ 23405523 (+) False LOC110529639
XM_036985057.1 mRNA downstream 118525 23368311 ~ 23405523 (+) True LOC110529639
XM_021612022.2 mRNA downstream 234622 23484408 ~ 23492107 (+) False LOC110529640
XM_036985058.1 mRNA downstream 234622 23484408 ~ 23493113 (+) False LOC110529640
TU781664 other upstream 248694 22946501 ~ 22972836 (+) False G686448
TU781666 other upstream 248694 22950182 ~ 22972836 (+) False G686448
TU780646 other upstream 739391 22480323 ~ 22482139 (+) True G685551
TU780557 other upstream 773457 22446771 ~ 22448073 (+) True G685469
TU780597 other upstream 788495 22423058 ~ 22433035 (+) True LOC110529616
TU781994 other downstream 234646 23484432 ~ 23524035 (+) True LOC110529640
TU782829 other downstream 734659 23984445 ~ 23990999 (+) False LOC110529210
TU782837 other downstream 734659 23984445 ~ 23990999 (+) False LOC110529210
TU784088 other downstream 1732943 24982729 ~ 24984826 (+) True G688613
TU784318 other downstream 1809167 25058953 ~ 25061450 (+) True G688823

Expression Profile