RNA id: XM_021612019.2


Basic Information

Item Value
RNA id XM_021612019.2
length 2272
RNA type mRNA
GC content 0.52
exon number 15
gene id galnt14
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 23260188 ~ 23365791 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACTGGACGGCATCAAGTGTCGTACCTCGTAGCTCCAGCGAGTCATAGCGCACAGCTTAGCTATCAGTTCGGTCATAGAGAATCTCGCAACCAGGGCAGTCATTGTGCACGCGTCTGGAGCAAGCGGACGTGCAGCGTTCGAAAAGAGAACCAGAGAATGAGGGTAGAGCGCAAAAGCACGTCTCCAGAACCTACTTTCCTAGAAATGTGCTTCTCGTAGGTTGCCCCGCCAATAAAGGGGCGATATCTGCTCCAGGAACTCATAGGAAAATGAAACGGCTTTCTCGAAAACTGACTTTGGCTCTGGTGGTGCTTTGTTGGACTGCTGCACTACTGTATTTGATACTCCTAAGTAGGCAGCAAGTATCAGACCTGGGCACCAAAGACGCACAGTACAGACAGATCTCGGAGGCAGAATGGGACGACCTCCTGGAAGAGTTTGAAGAGAAGAACTACCTTAACGCCAGGCGATGGAAACCAGGACAGGACCCTTACAAACTGTATGCCTTCAaccaaagagagagtgagaggatacCCAGCAACAGAGTTCTCAGAGACACACGACATTACAGatGCACCACATTGCATTATAACCCAGATCTGCCCTCCACCTCCATCGTCATCACTTTCCACAACGAGGCCCGCTCCACTCTGCTACGGACCATCAGGAGTGTGCTGAACAGGACGCCAGTCCACCTGATTCACGAGATCATCCTGGTAGATGACTACAGTGGGGATGCAAATGACTGCCTTCTACTCACCAAGTTGCCCAAAGTAAAGTGTCTTCGGAATGACAGGAGAGAAGgtctgaTCCGCTCCAGGGTACGTGGGGCAGATGCAGCGAAGGCTGGGGTCCTGACCTTCCTGGACAGTCACTGTGAGGTCAACAAGGACTGGCTGCCCCCACTGCTCCGGAGGATCAAGGagGACCCGACCTGTGTGGTGAGCCCAGTGATCGACATCATCAACATGGATACCTTCGCCTACGTAGCAGCTTCCTCTGACCTCCGTGGAGgctTCGACTGGAGTCTACATTTCAAGTGGGAACAGTTGTCTGCTGAGCAGAAAGCCAGGAGAGCTGACCCCACCGAACCCATTAAGACTCCCATCATTGCCGGAGGGCTGTTTGTGATTGACAAGGTGTGGTTCAACCACCTGGGGAAGTATGACACAGCCATGGACATCTGGGGCGGGGAGAACTTTGAGATCTCGTTCCGGGTGTGGATGTGTGGAGGGAGCCTAGAGATTCTCCCCTGCAGCAGGGTCGGCCACGTCTTCCGCAAGAAACACCCCTACATCTTCCCTGAGGGCAACGCCAACACCTACATCAAGAACACCAGACGGACGGCGGAGGTGTGGATGGATGAGTTCAAGCTCTTCTACTACTCTGCTCGCCCTGCAGCACGGGGCAAGTCCTACGGAGAcATTCATAGCAGGGAAGAGCTCCGCAAGAGTCTCAAGTGCAAATCCTTCAAGTGGTATCTGGACAACGTCTACCCAGAGCtcaaAGTGCCAGATGATTCGGACTCCAAGTCAGGGGTGATTCGTCAAAGACAGAATTGTCTGGAGTCCCGTAGGGTGGAGGGACAgaacctctcctctctcacactaGCACCCTGCATCGGAACAAAAGCTGTGTCAGCACTCAACCAGGAGTGGATTTACACCCACGGGCAGCAGATCCGTCAGCAGCagcactgcctctctctctccaccaccttCCCTGCCTCCCAGGTCATGCTCATGCCCTGCAACATCAGCGACGGGAAACAACGATGGCAGAAGTCAGGCACCCACCTGGAGCACCTGGTCTCCCACTTCTGCCTGGACAGTGAGATGGCCCTGGAAGGCATCGAGAGCAGCAAGATGCTGGTGATCAGCCCCTGTGAACTGACAGCCTACACCCAGAGATGGGAGATGCCCTTCTCATGATCCATCCACAACACAAGCCTTCCTGTAGAGGAGGACTACCCTACGAGCACTCACGACCTACTGCAGTGCTTACTGTAGCCAAGAGCTtttagaaagagatggaggaggttGGACACCGGCGTAAAGGGTATTTTTGGTCACTGAGATTAGTCTTTATAAGATGGCATGGACTTGGACTGACGTCAGCACATTCAATTGTTCAACAAGACACTCAgcagcagtggtggaaaatgtactcaattgtcatacttcagtaaaagtaaagaagaaagagaaaatgactcaaataaaagtgaaagtcacccagtgaaatactacttgagtaaaagtctaaaagca

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU782390 lncRNA downstream 10448 23245556 ~ 23249740 (-) True G687075
TU782325 lncRNA downstream 51373 23207872 ~ 23208815 (-) True G687024
TU782345 lncRNA downstream 70970 23189015 ~ 23189218 (-) True G687044
TU782342 lncRNA downstream 73797 23186158 ~ 23186391 (-) True G687041
TU782335 lncRNA downstream 85872 23173971 ~ 23174316 (-) True G687034
TU782454 lncRNA upstream 2563 23368354 ~ 23369103 (-) True G687137
TU782452 lncRNA upstream 37510 23403301 ~ 23405523 (-) True G687135
TU782472 lncRNA upstream 55875 23421666 ~ 23422179 (-) True G687155
TU782491 lncRNA upstream 84790 23450581 ~ 23450931 (-) True G687174
TU782501 lncRNA upstream 97754 23463545 ~ 23463755 (-) True G687184
XM_036985054.1 mRNA downstream 1066 23253587 ~ 23259122 (-) True angel2
XM_036985053.1 mRNA downstream 1720 23253587 ~ 23258468 (-) False angel2
XM_021612016.2 mRNA downstream 1721 23253587 ~ 23258467 (-) False angel2
XM_021612009.2 mRNA downstream 57955 23199930 ~ 23202233 (-) True nsl1
XM_021612008.2 mRNA downstream 57965 23199511 ~ 23202223 (-) False nsl1
XM_021612024.2 mRNA upstream 161839 23527630 ~ 23582982 (-) False LOC110529641
XM_036985067.1 mRNA upstream 249147 23614938 ~ 23620558 (-) False LOC110529643
XM_021612028.2 mRNA upstream 249147 23614938 ~ 23621822 (-) False LOC110529643
XM_036985069.1 mRNA upstream 249147 23614938 ~ 23621882 (-) False LOC110529643
XM_021612026.2 mRNA upstream 249147 23614938 ~ 23621944 (-) False LOC110529643
TU781111 other downstream 1099146 22159030 ~ 22161042 (-) False G685953
TU780899 other downstream 1335280 21920427 ~ 21924908 (-) False LOC110529207
TU780900 other downstream 1335280 21920427 ~ 21924908 (-) True LOC110529207
TU779858 other downstream 1780985 21478766 ~ 21479203 (-) True G684844
TU776244 other downstream 4468051 18791230 ~ 18792137 (-) True G681659
TU783285 other upstream 251116 23616907 ~ 23621246 (-) True LOC110529643
TU783300 other upstream 269518 23635309 ~ 23637408 (-) True G687890
TU783403 other upstream 389041 23754832 ~ 23756910 (-) True G687979
TU783552 other upstream 622308 23988099 ~ 23988854 (-) True G688109
TU783833 other upstream 1059272 24425063 ~ 24425553 (-) False G688366

Expression Profile