RNA id: TU781994


Basic Information

Item Value
RNA id TU781994
length 2430
RNA type TUCP
GC content 0.40
exon number 4
gene id LOC110529640
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 23484408 ~ 23524035 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACACAGTCCACTTCATGCAGTTGGTCATTTTTGGAGAGGTGTGCTCATCCGGTGTTGCGGAAGGGAGTCTTTGACAGATAGAGAATCAACAGTAATACATATTTCACACTTTGCCTGTTTACGCTCAACATGGACCAAAAAGACACCGAAATGAATGAGAAGGGAGTTACTTCTTCGACCAGTGGAGTTGTGGTCCAAGTAAGAGAGAAGAAAGGACCTTTGCGTGCAGCTATTCCATACATGCCATTCCCAGTAGCTGTATTATGCCTATTTCTCAACACATTTGTACCTGGTTTAGGTACCTTCGTGTCTGCCTTCACGGTGCTGTGCGGAGCGCGGACAGACCTGCCTGACCGCCacatgtgctgtgtgttttggctgaACATCGCAGCAGCCTTCATCCAGATCCTCACAGCCATCATCATGGTGGGCTGGATCATGAGTATTTTCTGGGGCATGGACATGGTCATCCTGGCAAgctaTAGGGATCAGAGGGTTCCCCAGCAGGTTTAAGGTTGGCCCAGCCCAGCTCAACGTGAAGCCTTGATGTACAGTTGTCTCCTATCGCAACATCCCCCTAGGGGAGAGCCAAGGCAGGATGATATTCACAGGCTTAACCCCACCCTACCTACTGTACCATATCGcttactgctactgctgcagctGCAGCTCCACTTCACAGCTCAGTGGTAGAATGAGGAGCACGTCAACATTGATGGAGAGGTGTTTTCTACATGTGCCCAAAGTGTCCTGTGAAGAAAATAACAGAATGAATTATGAATATGTGCCAACTGTATGTACAATACTATACCGTGTGCTAAGGACTATCCATCCTGTCTGGGGCACTAATTCAGTTGTTCAGGGGTCTTTatgaaaaaaatgaaatgtgCAGTTTATTCCTCTGTGTATGTTATCAGCTGTTCAACCACACTCTTATTATGACTAGTAGACTGAAGATGGTATCAGTGCCTGTCAAGTCCGCCAGGATTGTATAGTATGTGATGTTGTTAATGGTCCAATGccgccgtttttatctcaatatcaatcATTTtttggtaacaattaagtaccttactgtaatagttttccattaaaatggtcaaaaataaacaaaaagggCTTCTTAGCAAAGGGCAATTACTCAAGCAAGAATTccactaggactgtctgggagtggtttgagtagggaggggaaaactgaaaattagctgttattggcagagaggtttggaactctctttcttattggtctattaactattttaacgcctggtgatgtcaccatggaaggacaacactccatcccaccaaaacaggctgaaatttcaggcagccatttcaaacagctcttacactataagggcattatcataattctTACgaattcacagtattattccaacctcatagagtggaaatatatataaaacacagacaaATCTCatgtttgactgcactgggcctttaaaactTATGGCATATGGAGATGCactttttttatatacagtaatATTCTGCATGGATACCTTTGTGTCGTTTTTCAGATATGTCTATCGTATATAAAGACtactcacatcacacacacacacatttatagcCTTCTGTGACTTTTGTACTACTATTTAatggttgttgtttttgttgttcatTGTCAGTGTATTGTTCAGTGAATCATTCTGGGCCAGTTGCCATAGATACTGTCCATTTAAttaagtgtctgtgtgtacacatgGAACTAAAATGAATGTAATTGGTTATTTTTGCCTCCTGCAAATGGCAGGAGAAGAGTGGGACACAACTACAGCGACCAGTTGTGCTGTATGATCCATTTAAATAGTGGTATTTTTAAGCTAGAAATAATAGGAAAGTGGAAAAACATAGATGGTAGCATACGCTTTGATTGTGTTTTGAAGACATCTATTTTTTAAACCCGTTTGTTACAGTCAATTCCCTTAAATAGAACCAGGCGAGAGCTGACAGGAGACAAAAAGTGTCAGAGGAATGTAGCTAGCAGTCTGCCAGATATCATATTTTGTTCAGATGGATACTttaagttatgcagtTTAATCTTGTACTTTGTCAAGATTCAAGAATGGAAGCATTTGTCAGTGGCTTGTGTTTGAAGTAGAGTGTGTGATAAGTTTATTTCAGTATTACGGATAACAAAAGTACAAAGAAAAAGATTTAGCTCCAAGCATTGATATGTCACATTTCATGATCCCTGCACTTGAATGCCATGAATTGTGAAGAATATAAAATCCTCATTGGAGACTGAAACTACTTTCACAAAAGGAGATATTCAATGTATCTGTGAAATTTAAAGACCACTTCTAACTGTTCAATTATTTTACAGAATAAATAAGATGATTGTAACAAATAGCTGTAATATCACATTGGTGTACAGAATATCAAATATAAGTGACACGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU782005 lncRNA upstream 28289 23455927 ~ 23456143 (+) True G686744
TU782002 lncRNA upstream 32835 23451350 ~ 23451597 (+) True G686741
TU782001 lncRNA upstream 33237 23450971 ~ 23451195 (+) True G686740
TU781993 lncRNA upstream 35315 23448837 ~ 23449117 (+) True G686733
TU781991 lncRNA upstream 37015 23447115 ~ 23447417 (+) True G686731
TU782542 lncRNA downstream 3681 23527716 ~ 23529885 (+) True G687224
TU782543 lncRNA downstream 9284 23533319 ~ 23546534 (+) True G687225
TU782552 lncRNA downstream 23504 23547539 ~ 23547741 (+) True G687234
TU782553 lncRNA downstream 24795 23548830 ~ 23549094 (+) True G687235
TU782554 lncRNA downstream 25267 23549302 ~ 23549519 (+) True G687236
XM_036985055.1 mRNA upstream 78909 23368309 ~ 23405523 (+) False LOC110529639
XM_036985056.1 mRNA upstream 78909 23368309 ~ 23405523 (+) False LOC110529639
XM_036985057.1 mRNA upstream 78909 23368311 ~ 23405523 (+) True LOC110529639
XM_021612014.2 mRNA upstream 234646 23221529 ~ 23249786 (+) False vash2
XM_021612012.2 mRNA upstream 234646 23221530 ~ 23249786 (+) False vash2
XM_036985060.1 mRNA downstream 61685 23585720 ~ 23614904 (+) False LOC110529642
XM_036985063.1 mRNA downstream 61685 23585720 ~ 23614904 (+) False LOC110529642
XM_036985061.1 mRNA downstream 61708 23585743 ~ 23614904 (+) False LOC110529642
XM_036985062.1 mRNA downstream 64946 23588981 ~ 23614904 (+) True LOC110529642
XM_021612034.2 mRNA downstream 223361 23747396 ~ 23756935 (+) False znf512
TU781664 other upstream 511596 22946501 ~ 22972836 (+) False G686448
TU781666 other upstream 511596 22950182 ~ 22972836 (+) False G686448
TU780646 other upstream 1002293 22480323 ~ 22482139 (+) True G685551
TU780557 other upstream 1036359 22446771 ~ 22448073 (+) True G685469
TU780597 other upstream 1051397 22423058 ~ 22433035 (+) True LOC110529616
TU782829 other downstream 460410 23984445 ~ 23990999 (+) False LOC110529210
TU782837 other downstream 460410 23984445 ~ 23990999 (+) False LOC110529210
TU784088 other downstream 1458694 24982729 ~ 24984826 (+) True G688613
TU784318 other downstream 1534918 25058953 ~ 25061450 (+) True G688823
TU784988 other downstream 2154617 25678652 ~ 25681727 (+) False LOC110529690

Expression Profile