RNA id: XM_021612024.2


Basic Information

Item Value
RNA id XM_021612024.2
length 6055
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC110529641
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 23527630 ~ 23582982 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGAATTGAGGGAAAAGCTGCTTGTTGCGTAGAAATTAATGTAAGCGTCTACTTCCTTCCTGCTTTTTGAAGTACACTAAGCAAACATCGGCCTAGTACTACGCCAAAGCGAAGGGttgaagaagtcaaggggtcatAAGAGCAAGTATTTTGGACACGCTGTGGGAGAAAAAGTTTATTTATACTTGAACTGGCCTTCCTTTTGCTTGTGAGGGAATAAGGAGATTGTGTGCTATGTGAAATCCGCTTAATTTAAGAGATGTTTAGTGTTCTGAATCGCGCTGAATTGCACTCAGTGCTGTAGACATTCTGAACGGCTTTGAGGGTTGGACAGCCACGGGTTCGATATAGCAGGACTCCTATTAGGACGAGGTGTCTGTCAGTACAAGAATATTTAGCAGGGaattccacctctcctctcacaTACCCCACCAAATGCTATGGTGGGGTGTAGACACCAGAGCAGCAACCAGGACTAGGGCTAGATGGGAGCCCATACTGACAGTGCCAGCCTGATACTATGGCTGCTTCTGCCCTGAGCAGTCTGATTATGATGAATGGCAACAATCTGACGAGTGCGAGCAGCCCTCGGACTGGGAGGCCTGTGCTGCATGTGCCAAACCGTTCCACCTACTACAGCCCTGGTAGCCTGATTCCTGGCTCCCCTGGGGGCTCCTtcgtctccccctcctctccaggcCCCAGCAGCCCCAGGGCCCGCTCCCCCTGCCGCCACCCTGAAACCTTGGGGGAGATCGTGGGCAACTGCGTCCGCCGGCTCAGCAACAATGGAGATGATGAGGCCTCCAACTGGGAGGTGAAGCGCACGGTGCAGCTCCTGCAGATCCACCAGGAGCTCCTGAATGTGGAGGTCAACAAAAAGGTGGGTCTGTTTGAGGCCCACATCTTGAGGGGCCCGTGCAGAACAGTCCCAGCCTCCAAGCCCAGCCAGCCCGCCGAGGTGCCTCCCCCTAACCCCCCACAGAGAGACTGCCCTCCAAGCATTTCCAAGGAGCTCCAGAATGGGAAAGGGTGTCTCTGCTTGGAGGAGGGAGTAACAGGGAACGGCAGAGTGGAAAATAACACGACTGACCCAAATACGGAACAGGGCAGTCTGCTTGTGAACAAATCAGCAGGAACTTGGGCCCAAGCTGACAGTTCAGCAGGCAGTTATTCCCCAAGTTCACTGGGGGTTGGCAGCTTCTTGGCAGGCAGCAACAGCGAGCACCCTGTGGAGTGGGCCCAGACCTGCCTGACAAAGGCAGGAGCAGAGCCAACGGAAACCCAGCCACAAGCACCCTGGGCCAGCAGGGAGGGGAGCTACCCAGAAGTGGGGACCACCATCCCAGCCGTCATAGTCACCGACCACGGGATGGAGGCCCAGGGAGAAGGCTGTGATCCGGGCAGTGAGCCCCAGCAGAGCCCCGGGTCAACCCGAGGCTTGAGGAAGCTGTCCTCCTCCTCAGCTTCCTCCACaggcttctcctcctcctgggaGGAATCAGAGGATGACATCTCCAGCGACCCGGATAGAGCCGAGGGACTGTCACTTGCCTTCCTCAACACCCAGCAGAGAGCTCACAAGTCATGGAAGAAGATCAAGAACATTGTCCACTGGTCTCCATTCGTCATGTCTTTCAAGAAGAAGTACCCTTGGATCCAGCTGGCTGGTCATGCAGGCAGTTTCAAGGCAGGGGCTAACGGGCGTATCCTGAAGAAGCACTGTGACTGTGAGCAGCGCTGCTTGGATTGGCTGATGAAAGACGTGCTGCGTCCCTACGTACCGGCCTACCACGGAGACGTGGAGAAGGACGGGGAGAAGTACAACCAGATGGATGATCTGCTCTCTGAGTTCGACCTGCCCTGCGTCATGGACTGCAAGATGGGTGTCAGGACGTACCTGGAGGAGGAGCTGACCAAGGCCCGTAAGAATACCAGTCTGAGGAAGGACATGTACCAGAAGATGGTGGAGGTGGAACCCCTGGCGCCCACCCCCGAGGAGCAGGAGCAGCAGGCGGTCACCAAGCCCCGCTACATGCAGTGGAGGGAGACCATCAGCTCCACCGCTACCCTGGGCTTCCGCATCGAGGGCATCAAAAAGGAAGACGGGACGGTAAACAGAGACTTTAAAAAGACCAGGAGCATGGAGCAAGTGACAGAGGCATTCAACGACTTTGTCAAAGGAAACCAGAACAtcctgAACTGTTATCTGCACCGACTGAAGGACATTAGGGACACTCTGGAAATATCAACCTTCTTCAAGACCCACGAGgtGATTGGCAGCTCACTGCTGTTCGTCCATGACAAGCGTGAGCAGGCCAAGGTGTGGATGATAGACTTTGGGAAGACTACCCCTCTGCCTAAAGGACAGGTCCTGAGTCACAGGGCCACCTGGGAGGAGGGCAACCGCGAGGATGGCTACCTCTATGGCCTGGACCACCTCATAGACATTCTCACCCACATGGTGGTGACCCCAAAGCCAGACTCACTCTAAAAAGGGACTGTCCCCCCCCTCAACTCAATCCTAACCCCGACAGGACCACCACCTCGCACTACAATGACGCCTCTGATGTCCCCAAAAagctacccctccctcccttatTCCCCTTCTCCCCTGGCCCCAGATATCAAACTGTAACCACACAAGTGTTTTGTGTAAACTTGTAGATTCTGTACATACTGCTGTACAGTGTGTTTCTGTTCTGATGAGACCATGGGTTAGGTTAGGTTCCTTCTCTGCAGCTAGTCTGTGACAACCCTTCTTGAGattttagtttgttttgttttataacAGTTTAAGAATATATTTTAGTGTTAGCTAACAGTGTGTATCACTGCAGTTACAACTTCTATGGTGCATGGCCTTGTGGTAAAAGCCAAACATTTGAAATAGTTGCATTCAGAATTGTGGCACTTCCTGTGTTTATAAACTTATATACAATTTAAGATTTACAGAAAATGTCCAGGGtcaggtagcctggcgggtaggagcgttgggcagttgctggatcgaatccccgagctgaccatgtaaaaatctgttgttctgagcaaggcagttaacccactgttccccgggcgccgtggatgtcgattaaggcagccctctgcacatctctgattcagaggggttgggttaaatgcagaagacacatttcagtagaATGCATTCCGTTGTAATATTTGTAATACTATTTGTAATATTCCCTTGCTGAATTTTCCAATGTTTATTATTCATTTGTACCTCATTATGTAATAGTGTACTTGAGACTGTGCTGTGCCTATATTCATTCCAGTTTCTTTGGAGGGAAAGTAGAGAAGGTGGTATAAGTTAATGCACTCCGAAATGTAATTATGACCTATTTTATTAAGGCTAATGTTGACATTCCTGTAATCCAAACCATTGAAGAGTGACTGTCAGTTCAGAGGTCAATGTACATGAAGCAGATGGAGTGGGCGACTAACAGGAAACGGCTCTTAACCAAGTGAGAATGAGTTTGCATTCTAAATATGCCAAGTGCCTCAGCCTTTCAGCAGACATAAAAAgaccagggcccggtttcccaaaagcatcttaaagggatacttcgggatctTGGCagtgaggccctttatctactttgaCTCAGATCAACTAGTGGATACCATTTTCATGTTTTTGTGTCCAggatgaaggaagttagaggtagttttgtgagccaaagctaactagcgttagcgcaatgactcaaaagtctatgggtatctgctagcatgctagtaccCTATGGTTCTAAGATGAACTTAgtcttaagatgcttttgggaaaccgggcccaggttTTATTATCTTATTTTAATGATTCCATTAGTCAGAGATGACATCACCTGTGACTCCGTCATTAATGTATATCGTCTACCACTGTACACCCATAATAATCACGGCTCTTAGAATGAACCCACCCCATCCTGTTTTCCTAGGATCCTGTTATTGTGCACAAGACAGATGGTGATTGCTGTTTGCATGGCAATTTGACATTCATATATACCATTCCTGCCTGATGCCCAAACATCCTGAGGTGGCAAACAAAACGAATGGGGTgttgtctgtctactgtctatttATTaagtctacagacagagagataggcatTTAACAGATCAACATTGTCATCATTGTCTGTTTGGATTCAATTAGCATTGAGTCATGTTTTTGATCACAGTCGGATCACACGCGCATGACATTGACCATAGAAAGAGTAACTTGCATGGTATGGGAGCTTTTTATGGGCGTTAATACCCTTTTTTAATAGTTTACTTTAGGGTTTAATAGTCATTCACCTTTAATAGCCATATCACATACAATAGTCCTAGTTATGAGAGTGAGGTGAGGTTGGCCTTGTTTTGAAATGACTGTTCTCTCACCTATATCTAAGGAACTGAGAGGGGTGTGGTGTGTTAGGACTGCAAACATCATGTCCTAAAGAAACAGCTCACTTCTCCATGGCCTTTAATGGGTGGAGCTTGAGGCAGTTGATTCTAGCAGGACAAACTGGACCAATAGTTTTGACCAATACCCAAGGTGTAAAACTTTGTTCTTTACGTGTCCTGTCTTTGAGTGCCATTGAACTACTTTACCTTTGCATCAGGGTTATCAACCTGAAACGTttcaaaataaatacagtttggTATGTTAAAGTATGACTTGATATTAATggcctgcactgttggagctcggagcTTAAGATGTTCACTGTACCCTGCATTTACATCTGcaaccctgtgcatgtgactaatacactTTCTGAATCTAAATCTAATGTGATGTACAGGATTGTGGTGCGTTTGCATGAGAGTGATACTATCGGCCCATTGCACTGGACCAGAAAGGACAGAAATAAAGAGTAGAGTGCCCTCTGCTGTTACTGAACTGTATTACATTGAGCAGCATAAAACAAATGACATGGGTGCATTTTCCAGAAACACATTGTGACTTTGATTTTAATATGTTGCCTTTATTCTCTTACTTCAATATTTCTTCAGTAGCTTCTTTCAAATCCCTCCTCTGTCGTTGTGCTTGTCGTTTTTGTGAAGTCTCTTAGAATGATATACTCATGACCATATTTATTTCTTTGTGACATTTGCACAAGAACACTAATGcatgtgttttcatttttgttgAAAGTCAGACATGATATAATCATTTAGTAAGTCACTGTAATATACAATGGTCACTGCTTCTTACAATGTGTaaataatactgtatgttttagAGATGAACAAGAAGTCTGTGTTCTGTGCACTCTACCAGGCGTTCTTTTGTGCCTTGTGACACCTATGATCTGTATAGACCTGGTTTTGGGCTACGCTGGCCAAAGAGTGGTTGACATGGAGATTGCCATAGCAACCTCATCTGTCATCCCTGGTCCAGGTTGACATGATTGAGTCATTCCTCTCCCAGCCTTGTGCTGTGACACTGTGGGGACATTGCGCCTGAGATCCTCTGCAGGGTTGGGGTTCATTCCAATTTCATTTGGAATTCTTTAATTCGCTCATGAAGTGGAGAGTTAATTCAGCTATCTTCAAGTTATGTAATTGCAATTGAATTGAAATGATATTGTTTGGACTGTTTGAATTTAAATTGAATTGGCATTGGAATTCAATATTGGTACATTTCCTAGTAAATTGAATTAATGCACTTAGTATCAAACATTGACCGCAGGATTTGTTTGAAATAATTTCAActtatatttctatatttccaatatagctaggctgtctgaacagtgacatGATCTGAAAGCCTGAGGAAATTGAATTTGAATTGGAATGTGGGAATTGTTGGGGATAATATTGAATTATCTCCGAATTCAAAGACTGACCTGGAATTTTTATTGAATGAAATGGAATTTACAGGGAGTTGTGGAACAAATCCCACCCCTCGTCTTcaggtcattgtgctgtctccccATGGATCTGCTCATGTAAATCATGCCATCATGTCAATACTGCAAGCAAAAATATGCTTGACTGTACCATTTTTACTGTAGTAAATTTGAACAATTGCTTAAACGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU782527 lncRNA downstream 3592 23520461 ~ 23524038 (-) True G687210
TU782514 lncRNA downstream 45351 23481956 ~ 23482279 (-) True G687197
TU782501 lncRNA downstream 63875 23463545 ~ 23463755 (-) True G687184
TU782491 lncRNA downstream 76699 23450581 ~ 23450931 (-) True G687174
TU782472 lncRNA downstream 105451 23421666 ~ 23422179 (-) True G687155
TU783331 lncRNA upstream 39397 23622379 ~ 23622645 (-) True G687920
TU783332 lncRNA upstream 40163 23623145 ~ 23629792 (-) False G687921
TU783333 lncRNA upstream 40163 23623145 ~ 23629792 (-) True G687921
TU783343 lncRNA upstream 80378 23663360 ~ 23663624 (-) True G687931
TU783344 lncRNA upstream 81255 23664237 ~ 23664509 (-) True G687932
XM_021612019.2 mRNA downstream 161839 23260188 ~ 23365791 (-) True galnt14
XM_036985054.1 mRNA downstream 268508 23253587 ~ 23259122 (-) True angel2
XM_036985053.1 mRNA downstream 269162 23253587 ~ 23258468 (-) False angel2
XM_021612016.2 mRNA downstream 269163 23253587 ~ 23258467 (-) False angel2
XM_021612009.2 mRNA downstream 325397 23199930 ~ 23202233 (-) True nsl1
XM_036985067.1 mRNA upstream 31956 23614938 ~ 23620558 (-) False LOC110529643
XM_021612028.2 mRNA upstream 31956 23614938 ~ 23621822 (-) False LOC110529643
XM_036985069.1 mRNA upstream 31956 23614938 ~ 23621882 (-) False LOC110529643
XM_021612026.2 mRNA upstream 31956 23614938 ~ 23621944 (-) False LOC110529643
XM_036985064.1 mRNA upstream 31956 23614938 ~ 23651083 (-) False LOC110529643
TU781111 other downstream 1366588 22159030 ~ 22161042 (-) False G685953
TU780899 other downstream 1602722 21920427 ~ 21924908 (-) False LOC110529207
TU780900 other downstream 1602722 21920427 ~ 21924908 (-) True LOC110529207
TU779858 other downstream 2048427 21478766 ~ 21479203 (-) True G684844
TU776244 other downstream 4735493 18791230 ~ 18792137 (-) True G681659
TU783285 other upstream 33925 23616907 ~ 23621246 (-) True LOC110529643
TU783300 other upstream 52327 23635309 ~ 23637408 (-) True G687890
TU783403 other upstream 171850 23754832 ~ 23756910 (-) True G687979
TU783552 other upstream 405117 23988099 ~ 23988854 (-) True G688109
TU783833 other upstream 842081 24425063 ~ 24425553 (-) False G688366

Expression Profile