RNA id: XM_036985069.1


Basic Information

Item Value
RNA id XM_036985069.1
length 2493
RNA type mRNA
GC content 0.44
exon number 13
gene id LOC110529643
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 23614938 ~ 23659111 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTggttaacaaaaaatAAATCATGTCAGTACAATTTCTGGTAAAGGACACTGATAATTTGCTGATTTCTAAACCCTGTGACGGTTTCGTATGGGCTGTCTGATCTTGGCGTGATAAAGTTCGATATTAAACAGCAGCAGGTCAGAGCAGCTGGGATCAAATCCTATTTTCCTACAGCAGCATCAGTGTGAAAGTACAAGTATGAGTCAGGCAAGGACAATGAGTTTGGAAGAGCAAATCAGGAGCCTCTCACCAGTTGCAGCACATGCTCTGGCAATTGCTGAAATTACAGATGACATTGACATTCAAGAGTTAACAAGAGCAGATCTGAACGAACTTCTGCCAGGCCTTCAACATTTAAAACTTAGAAAGAAGATCAGTGAACTTATAAATACATCTAAACAGAACACAGCTAAACCTATTGCTTTAGTTCTTAACAAGCTAAGGGAATTCCTTCCGGTTGATGTCATGGAGAATGCACTTGTTCCCGGGGGAGTGTTACATGGCTACTTCCCTATTCTTAGAGATTTGGAGAAGCAGCTGGCCGAAGCCCTCTACTTCATTCAGGCACACGTTGGTTTGCTCGAGAGCTACATTGGAGAAGAGTCCATGGAGGCTCAGAGCAGTGCTGCATCTCCATCAGTTGACTCTGCTACAGCAGGAAACCAACCATCAAATGTTGAGGTCCAGAAAACATCTGTTAATCGCACCTCAGGATCATCAGCCTTATGTGCCGCTGACAGCCAGCCCAAACAATGCAGAACAGAAGTGTCTGGTGCGCCGAACAGACCCACCTTCAAAGAAACTCAAGATGAGACCTCAATGTCACACTCTCATACTTCAGGAGCAGCTGGTGCTGACACCCATTTTCAAAAAAGTATAACGGATCCTTCTCAAATTTCCACCGGTAGTGGGCTGCACGAGCCACGATGCAAACAAGGAGATAAGATGTCCTCATCTTGGTGGAATTTTAGAGCAACTGAACCTCTAAATAAGAAACAAGCAGTTAAAGTCCATTCACAAGTCTGTGGAAAAACCCTGGACACTCACCTTGCACTCATGAAACAAGTGGATGATCTGGCAGTAGGACTAAAGCGAGAGGAGACCAGACCAGAAGACTGCCAAGTCATAATAGCCTTCTGTCCTATTACATCTCGTGTGGGAACAGACATTGATGCCGCCATGAGCAAAGTTCAAAGTAACAAAGATGTCATTCTAGTGGTGATGCACCATACTTTTGATCACTGCTTTGTCACAAGCCAGAGATCTGCATCTCACTACATAAACGTAGTGGAGGAAGTTAATGTTCTCTTCCATGACTCTATGGGACTTCTGCGTTGTGAAACAAATGATAAAGCAGTGACTCTCATACACAAGGCCTTACAGAAATACAGCAGCACTACTTACAAACGTTAAGTGCCCCCTGGTGGCAACAAAGTAGTGTCTGAAGTTTAACATGCAAACATGATTTAAAAACCTCATTCTACCATTCAAGGCGCTGGTAATTCATTCTAGTTCTagcccgactagtctcccagtccctgccactgaaaaacatccccacatcatgatgctgccaccaccatgcttcactttagggatggtgccaggtttcctccagatgtgatgcttagcattcaggccaaagtgttcactCTTGGTTTctacagaccagagaatcttgtttcttatggtctgagtcctttaggtgccttttggcaaacctcAAGCAGGCTCTCATGTGggctgccttttactgaggagtggcttccacctggccactctaccataaaggcctgattggtggagtgctgcagagatggttgtccttctggaaggttttccatCTCCacacacctccctgaccaaggcccttctcccctgattgctcagtttggccgggcggctctagggtcttggtggttccaaacgtcttccatttatgAGTgttggagaccactgtgttcttggggaccgtcagtgctgcagacattttttccgatacccttccccagatctgtgccgacacaattctgcctcggagctctacagagaattcgtttgacctcatggcttggctttttgACAtgtgctgtcaactgtgggacctttttatatagacaggtgtatgcctttccaaatcatgtccaatcagttacatttaccacaggtggactccaatcaagttgtagaaacatcaaggatgatcaatggaaacaggatgcaccagagctgaATTTCAAGTCTCACGGCaatgagtctgaatacttatgtcaataaggtgttttttatttttaatacatttgcaaaaaattcaacaacctgttttcgctttgtcattatgggatattttgTGCagattttgaaatgttttatttaatccattttaaaaagtcaagtggatgaatactttcccaatgcatcATTCATTCGTGTTTCATGAGGAATTTGTCTCTGTAGATGGACTTAAAGCTAAATAAAATGTAAGTTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU783269 lncRNA downstream 35209 23579575 ~ 23579729 (-) True LOC110529641
TU783313 lncRNA downstream 40251 23574457 ~ 23574687 (-) True G687902
TU783271 lncRNA downstream 82099 23532520 ~ 23532839 (-) True G687873
TU783270 lncRNA downstream 82533 23531755 ~ 23532405 (-) True G687872
TU783268 lncRNA downstream 85722 23527699 ~ 23529216 (-) False LOC110529641
TU783331 lncRNA upstream 497 23622379 ~ 23622645 (-) True G687920
TU783332 lncRNA upstream 1263 23623145 ~ 23629792 (-) False G687921
TU783333 lncRNA upstream 1263 23623145 ~ 23629792 (-) True G687921
TU783343 lncRNA upstream 41478 23663360 ~ 23663624 (-) True G687931
TU783344 lncRNA upstream 42355 23664237 ~ 23664509 (-) True G687932
XM_021612024.2 mRNA downstream 31956 23527630 ~ 23582982 (-) False LOC110529641
XM_021612019.2 mRNA downstream 249147 23260188 ~ 23365791 (-) True galnt14
XM_036985054.1 mRNA downstream 355816 23253587 ~ 23259122 (-) True angel2
XM_036985053.1 mRNA downstream 356470 23253587 ~ 23258468 (-) False angel2
XM_021612016.2 mRNA downstream 356471 23253587 ~ 23258467 (-) False angel2
XM_036985070.1 mRNA upstream 56949 23678831 ~ 23682110 (-) False LOC110529644
XM_036985071.1 mRNA upstream 56949 23678831 ~ 23682110 (-) False LOC110529644
XM_036985078.1 mRNA upstream 56949 23678831 ~ 23682843 (-) False LOC110529644
XM_036985075.1 mRNA upstream 56949 23678831 ~ 23682846 (-) False LOC110529644
XM_036985072.1 mRNA upstream 56949 23678831 ~ 23682852 (-) False LOC110529644
TU781111 other downstream 1453896 22159030 ~ 22161042 (-) False G685953
TU780899 other downstream 1690030 21920427 ~ 21924908 (-) False LOC110529207
TU780900 other downstream 1690030 21920427 ~ 21924908 (-) True LOC110529207
TU779858 other downstream 2135735 21478766 ~ 21479203 (-) True G684844
TU776244 other downstream 4822801 18791230 ~ 18792137 (-) True G681659
TU783300 other upstream 13427 23635309 ~ 23637408 (-) True G687890
TU783403 other upstream 132950 23754832 ~ 23756910 (-) True G687979
TU783552 other upstream 366217 23988099 ~ 23988854 (-) True G688109
TU783833 other upstream 803181 24425063 ~ 24425553 (-) False G688366
TU783834 other upstream 803181 24425063 ~ 24425553 (-) True G688366

Expression Profile