RNA id: XM_036985074.1


Basic Information

Item Value
RNA id XM_036985074.1
length 1540
RNA type mRNA
GC content 0.42
exon number 10
gene id LOC110529644
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 23678831 ~ 23682862 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGATAAAACCCATCTCTTTTCCCTCAAGCTGTGTACATTTTCACTTTCCTCTGGGCATCAAAGAAGGAAGTCAGATAGTCTTTCAATAGTCATCTTCCAAAGGAATTCACACACCATTATGGTTCAATCACATGGTCAAATAAAGGCAAGAGGGGATGTGGGCGTGAGACTGCACAGCTTATCTCAGAGGGAGAGGTGCCAAGGTTGATGAGGTACTACACCATCACCACTGGCAATACTATGGATTCCCATATCCAGTTTATGAGACAACTTGGAGGAGGCTTCATTGAAGTGATGTCACCAGAGCAGGGTGATGTCATCATGTCTTTCTGTCCCATCGTCTCTCCTGCTGGTACTGATATTGAGGCAGCACTGCAGCAGATTCCAGAGGGTAAAGATGTCATTCTGGTAGTCCTGCATCACTATTTTAACCCAGACTACACTGTACCTGACAGCAGCAGACTAGTGACCAGAAGTGATGTAATACTCACAGTGGACTGTCTGTTCCATGAGAGTAAGGGAGGACTACTGAACTGTCCTCGCAACAAAGCAGCAGTTGGTAAAATTCTGAACCGGCTGAACATGAAGCCAAAGGTGGTAGATATCAGCATGGACATCCCTGATCACAGAAACAGTCCGCATACATTTACTAGAGAGATGTCAGGGATGGTGAAATTCTTCAACTGTGTGGTTGGCAATACCTTGGGTGCTCATGTGGATTTGACAAGACATCTCGTCATCAGAGGAGGCTGTACTGAAGTGATGCCACAAGAGGAGAGTGATGTCATCATGGCTTTCTGTCCCATCGTCTCTCGTGCTGGGACTGATATTGAAGCAGCACTGCAGCAGATTCCTGCTGGTAAACCTGTCATTCTGGTAGTACTGCATCACACCTTCAACCCAGACTACACTGTACCTGACAGCAGCAGACTAGTGACCAGAGAGGATGTATTACTCACAGTGGACTGTCTCTTCCATGAGAGCCAGGGACTATTGGAGTGTCATCGCAATGAAGCAGCAGTCAAAGAGATTCTGAAGAAGCTTAATATACATCCTGAGATGGTGTGTTCCAGTGTCCTTGATTGCATCAGAGCAGACAGGAGTTCTTTTTATGTTTTCTACTCTCTTACAGGTTGCCAGAGATCACCATTTGCATGTGTTGTTGGGCTCATTATGTTTATTGTTCTTTTGTGTTTGGTGGTAtttttgattgttttttatagaAAGAAACAATGAGGTTTATCAAAATAACCTAATGGAAAAAGAGCAAGTAGGTCTAAAAAGCAACAGAGGAATAAACCGTATAAATTACACAGACAACACAGATAAACTGACTTAATTATAcattaaaaataaagaataaagcCTAATAAAGCACCTACTCTACCTACCTCTACCTATCTATCAGGATAGTATAGTAGTTTAAGATGGCATGATGCTCATGTAATATTGTAGGACTACTCTGATAGTATATTCTGTGTTGTCACTTTGTTCTGCTTTGACTGCCCTTCTTTTAAATATTAAAGTCATTTAATTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU783348 lncRNA downstream 10995 23667631 ~ 23667836 (-) True G687936
TU783346 lncRNA downstream 12654 23665961 ~ 23666177 (-) True G687934
TU783344 lncRNA downstream 14322 23664237 ~ 23664509 (-) True G687932
TU783343 lncRNA downstream 15207 23663360 ~ 23663624 (-) True G687931
TU783333 lncRNA downstream 49039 23623145 ~ 23629792 (-) True G687921
TU783352 lncRNA upstream 2981 23685843 ~ 23731426 (-) True G687940
TU783357 lncRNA upstream 9978 23692840 ~ 23728805 (-) True G687945
TU783376 lncRNA upstream 53198 23736060 ~ 23736363 (-) True G687964
TU783378 lncRNA upstream 54844 23737706 ~ 23737906 (-) True G687966
TU783381 lncRNA upstream 60458 23743320 ~ 23743743 (-) True G687969
XM_036985066.1 mRNA downstream 19720 23614938 ~ 23659111 (-) False LOC110529643
XM_036985068.1 mRNA downstream 19721 23614938 ~ 23659110 (-) False LOC110529643
XM_036985064.1 mRNA downstream 27748 23614938 ~ 23651083 (-) False LOC110529643
XM_036985065.1 mRNA downstream 27748 23614938 ~ 23651083 (-) False LOC110529643
XM_021612026.2 mRNA downstream 56887 23614938 ~ 23621944 (-) False LOC110529643
XM_036985087.1 mRNA upstream 11599 23694461 ~ 23695734 (-) False LOC110529645
XM_036985084.1 mRNA upstream 11599 23694461 ~ 23695756 (-) False LOC110529645
XM_036985085.1 mRNA upstream 11599 23694461 ~ 23696517 (-) False LOC110529645
XR_005052840.1 mRNA upstream 11599 23694461 ~ 23697537 (-) False LOC110529645
XM_036985086.1 mRNA upstream 11599 23694461 ~ 23724225 (-) False LOC110529645
TU783300 other downstream 41423 23635309 ~ 23637408 (-) True G687890
TU783285 other downstream 57585 23616907 ~ 23621246 (-) True LOC110529643
TU781111 other downstream 1517789 22159030 ~ 22161042 (-) False G685953
TU780899 other downstream 1753923 21920427 ~ 21924908 (-) False LOC110529207
TU783403 other upstream 71970 23754832 ~ 23756910 (-) True G687979
TU783552 other upstream 305237 23988099 ~ 23988854 (-) True G688109
TU783833 other upstream 742201 24425063 ~ 24425553 (-) False G688366
TU783834 other upstream 742201 24425063 ~ 24425553 (-) True G688366
TU783821 other upstream 756103 24438965 ~ 24440200 (-) True LOC110529658

Expression Profile