RNA id: XM_036985083.1



Basic Information


Item Value
RNA id XM_036985083.1
length 978
RNA type mRNA
GC content 0.41
exon number 6
gene id LOC110529645
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 23694461 ~ 23732156 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCCAAGGTTGATGAGGTACTACACCATCACCACTGGCAATACTATGGATTCTCATATCCAGTTTATGAGACAACTTGGAGGAGGCTTCACTGAAGTGTTGTCACCAGCGCAGAGTGATGTCATCATGGCTTTCTGTCCCATCGTCTCTCGTGCTGGTACTGATATTGAGGCAGCACTGCAGCAGATTCCAGAGGGTAAAGACGTCATTCTGGTAGTCCTGCATCACTATTTTAACCCAGAGTGCGCTGTACCTGACAGCAGCAGACTAGTGACCAGAAGTGATGTAATACTCACAGTGGACTGTCTGTTCCATGAGAGTAAGGGAGGACTACTGAACTGTCCTCGCAACAAAGCAGCAGTTGGTAAAATTCGGAACCGGCTGAACATGAAGCCAAAGGTGATAGATGCCATCGTGGACATCCCTGATCACAGAAACAGGCCACTCTCTGTCGCAGCACACATTTATTGGAGATGGTGTGTTCCAGTGTCCTTGATTGCATCAGGGCAGACAGGAGTTGTTGCCAGAGATCACCATTTGCATGTGTTGTTGGGCTCAttatgtttcttgtttttttgtgtttggTGGTATTTTTGATTGTTTCTTTCTGGAAACAATGAGGTTTATCATAATAACCTAATGGAAATAGAGCAAGTAGGTCTAAACATCAACAGATGAATAAACCATATACATTACACAGACAACACAGATAAACTGACTTAATTATAcattaaaaataaagaataaagcCTAATAAAGCACCTACTCTACCTACCTCTATCTATCTATTAGGATAGTATAGTAGTTTAAGATGGCATGATGCTCATGTAATATTGTAGGACTACTCTGATAGTATATTCTGTTGTCACTTTGTTCTGCTTTGACTGCCCTTCTTTTAAATATTAAAGTCATTTAATTTCAGTTGCTTTATGAGTGTGTGATTGATGAAGCACAAATAGTCATCATTACGCTTTGACATT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU783348 lncRNA downstream 51774 23667631 ~ 23667836 (-) True G687936
TU783346 lncRNA downstream 53433 23665961 ~ 23666177 (-) True G687934
TU783344 lncRNA downstream 55101 23664237 ~ 23664509 (-) True G687932
TU783343 lncRNA downstream 55986 23663360 ~ 23663624 (-) True G687931
TU783333 lncRNA downstream 89818 23623145 ~ 23629792 (-) True G687921
TU783376 lncRNA upstream 3904 23736060 ~ 23736363 (-) True G687964
TU783378 lncRNA upstream 5550 23737706 ~ 23737906 (-) True G687966
TU783381 lncRNA upstream 11164 23743320 ~ 23743743 (-) True G687969
TU783382 lncRNA upstream 12417 23744573 ~ 23744774 (-) True G687970
TU783383 lncRNA upstream 12739 23744895 ~ 23745118 (-) True G687971
XR_005052840.1 mRNA downstream 22073 23694461 ~ 23697537 (-) False LOC110529645
XM_036985085.1 mRNA downstream 23093 23694461 ~ 23696517 (-) False LOC110529645
XM_036985084.1 mRNA downstream 23854 23694461 ~ 23695756 (-) False LOC110529645
XM_036985087.1 mRNA downstream 23876 23694461 ~ 23695734 (-) False LOC110529645
XM_036985074.1 mRNA downstream 36748 23678831 ~ 23682862 (-) False LOC110529644
XM_021614355.2 mRNA upstream 59843 23791999 ~ 23805391 (-) True LOC110531080
XM_021612041.2 mRNA upstream 150914 23883070 ~ 23908519 (-) False trim54
XM_021612040.2 mRNA upstream 153708 23885864 ~ 23908520 (-) True trim54
XM_021612048.2 mRNA upstream 178345 23910501 ~ 23928808 (-) False LOC110529650
XM_036985092.1 mRNA upstream 178345 23910501 ~ 23928808 (-) False LOC110529650
TU783300 other downstream 82202 23635309 ~ 23637408 (-) True G687890
TU783285 other downstream 98364 23616907 ~ 23621246 (-) True LOC110529643
TU781111 other downstream 1558568 22159030 ~ 22161042 (-) False G685953
TU780899 other downstream 1794702 21920427 ~ 21924908 (-) False LOC110529207
TU783403 other upstream 22676 23754832 ~ 23756910 (-) True G687979
TU783552 other upstream 255943 23988099 ~ 23988854 (-) True G688109
TU783833 other upstream 692907 24425063 ~ 24425553 (-) False G688366
TU783834 other upstream 692907 24425063 ~ 24425553 (-) True G688366
TU783821 other upstream 706809 24438965 ~ 24440200 (-) True LOC110529658

Expression Profile