RNA id: XM_021612038.2


Basic Information

Item Value
RNA id XM_021612038.2
length 3939
RNA type mRNA
GC content 0.47
exon number 15
gene id znf512
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 23747396 ~ 23756935 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATAGATAATTGATACTATAGGTTTTGTCGGAGCATTATTTTTAATTAGATATCCTCTTGAAAATTTCAGCATGGCCATTTGATGGTCTTTCTATTCAAATAACCGAATCCAACGAGTGGTTAGGCGGATCGTTGTCGGGGGGAAATGACAGAGGGGGACTAAAACAGGAAGGAATGGCAGCTAACCTTGCTAAGGAGTGTGCGGTACGGGTAGACGTTTCACAATGTAACGTTAAGTGCATCAAACAATTAAATTAGTAGGTGGCTACATTGTAGCCAAGTTGTTTGAGCGCGTGTAGTGCAACGGTTAGAACGTTTACATTATATCAGCATCCAGAGTGTAGATTTGCTGCAACGTCACTGCAAAGCAAGCGTTCCCCTTTTTTGTGTGGCTATTcgtggaaaatgatggtggctgTGGCTCTAGAAACACTGCTACTGCAACACTGCTCGAGTAAGTACTGATCGGTCAGGTCAACTGCAATCATGGATCATCGTCAACTTCATCATCACACACAAGGAAGCATGTCACCATCATATGTGCCAAGGAAGAGGAAGGCTtcacaaccaaaacaaaaaagTGGTGTTCCACTACCAGCTATCCAGAAGATGCCAGATATGAGTGTGATGAGCATGATTGGTGTTCCACCTAAGAATGATGACCCCCATGCCCAGGCGACCCAAAAGATGAAAAGATCATATGGCAGAAAAAGGTCAATGGGCCCACTGTATGAGGATCTTCAGACTGTCTCTCTGGGTTCTGGTGTGGAGGATTCAACCAGCGAGACGTCCTGCTGCTCCGTGGTGTCTTCCAGCCTGGCTGTAGCCAACGTTCCAGTTCCTGTTGGAGGTGGGCATGTTCATAGCCATGTCCATAGCGGTCACTCAGTGGGAGGTGGGCATAGCAATATCTACAGCAGTCTCTCGGTTGGAGGTGGACATGCCCATAACCATGTCGACAGCAGTCACTTGGTAGGAGGTGGACATGCCCATAACCATGTCGACAGCAGTCACTTGGTAGGAGGTGGACATGCCCATAATCATGTCGACAGCAGTCACTTGGTAGGAGGTGGACATGTCCATAGCCATGCCGACAGCGGTCACTTGGTAGGAGGTGGACATGCCCATAGCCATTTTGACAGCGGTCACTCGGTTGGAGGTCGGCATGTCCATAGCCATTTTGACAGCAGTCACTTGGTAGGAGGTGGGCATCTCCAGAGCAGTTACCCTATTGGAGGTGAACTTGTCCAGAGCAGTTACTCTGTTGTAGGTGGACATGTTCATAGAAGTCACACTATTGGAGGTGTGACTATCCAGAGCAGTCACAGTCACCCAGCAGAGCCTACCGAGGAAGAGAAATCTAAAGTCTTCACCTTCACAACCAAGAAGGAACCCCCAGTCTACCCCCCAGGAAGTCAAGAAGAGAGGTGGCAGCTGATGATCCTGGGCAAAGGCCGAGTCACGTGCCCCAAGTGTAAAAGTGTGAGCAGGAAGACTGTGGATGGCCTGAAGAAACATATGGAGAGCTGCCGATTGAATCCCTTCACGTGTCAGCAATGCGGGAAACAACTGAAGTCTTCCACGGGAATGAAGTACCACATCATGGCAGACCACAATAACCTGCCCTCACCAGATGACATAAATGGCCTGAATGACCAGTCCATGAAGGAAAAATTGAGGAAGGTGCTGAAAAGGATGGGCAAATTAAAATGCTCGAAAGAGGGCTGCACTGGTAGTTTCACCAGCATCATGGGTTACCTGTACCACATGAAGAAATGTGGGAAAGAGGAGTCTGAGCTGGAGAAGCTGCTTCTCAACTGCCAACACTGTGGCAAGGTCTACAAGTCCAAGGCAGGCCTGGAGTACCACCTCAAGTCGGAGCACGCACCAGTGCCTCAGaatgcagaggaggaggaggtgaaggctcAGAGAGAGCCCAACCCTGAGAGGACACCCAGCGGCCGGGTCAAACGCATGTCAGCCCAGGTGGCCTTTTTCCACCTACAGGAGATTGCTAATGACGAGCTGGCCAAGGAGTGGCCCAAGAGGAAGGTCATCGGAGACCTTGTCCCAGACGATAAGAAGCTGAGATATGCCCGGCCAGGGCTGCCTGCCTTCAGTCAGGAGGTCCTTCGGAAGTGGAAAAACGAAGTGAAGCTGCAAAAAAAAGTTCAGTGCCCAAACCTGGGCTGCGGCTCGGTCTACACCAGTGTGTCTGGACTGAAGGCTCACCTTGGGCTCTGTGGAAGGGGGGACTTTGAAGCAGGGAAATACAAATGCCTAATCTGTAAGAAGGAGTTCAACTCAGAGAGTGGGGTGAAGTACCACATCAATTCTGTCCACTCCCAGGACTGGTTTGTGGTGACCTCAAAATCCAAGAACTTTGATAAGGTCCTAAAGACCAAGCCCAAGGTGCACAGCACTGTGAATGACCCCACTGACCAGCTCCAGCAGCAGACCCTCCATGTCTTCACCCCCGTCCTGGAGCCCTGGCAGGACATGCAGATGGGACCCCCACCAGCGGTGCCTGAGTCAGCCCTGCAGGTCAACCCTGAGGcagcagaggggaagaggagggggaaggggagagggaaggagaaggactGCTATGACTTCACTGGCAGTGATCATtccagcagtagcagcagtggcaGCTCCAGCAGTGGATCAGAGACAGAGGAGCCTGAGGGCCAGACACACAACGTTGACCAATGGGCACTGCAGAGACCCAGTATCATCGAGACCCACCCTGAAGCCGCCAAGCGACCCAGAAGCAACCTCTAGTTCGGTTTGATCACCTGACTTCCGATCAGGGGTCCGTGCAGGAGGGTGCAACGTTACAGAACGTTCAAATAGAAATGCATTCTGCATTGGTCCTGGGATGTGTAGTCTGTGTTTCAACTGTAACTATGAGATCATCTTAGCCAACTTTTAATGTGTCTTATTATTTTAATAAGATTTATAACTTTTTGTTTTCTGACGTGTTTACTTAGACTTTTTTTTAACCCCTATTATCGGTAGACTTGTGTTCCTCTACAGATTGTGCCTAGTGTATGGATTTATTATTTCATACAACTCCTTATTATAACTGAACTGTTATCAGACCTCTTTTTACAATGCATATTTAACCAAAGCATGTGGTGTTAATGTAGCCTGCATTTTATATCATGGATTGTGAAATGTTAACGCAGGATGAATTTGAAATACGGTGGTTGTCGGTTATAGTTGTCCGTGATGTGTTAACGCTGCATTGTTTGTGGATGTACGGGCCAGATGGAAATAGGTGCATTTGTCATTTTATTTACTCTCTTTGTGCCCCTCTGCTGTAAGATTGTATTTAGTTTATTCTTCTCCTGTTGAGATTTGTCAGTGCGCTTCTGTTTAAGGTTTGGAATAGATTCATCTGTTTTACTTACTTTTGAATAATGAAGCTGCCCTTAATTTTTTTTAACGATCCCTAACACATTGATTGTTAACAATTGGGTTTCCCTATTTGATGGCTTAGAAAATGTTACAAAGACAACCAATGTCTTTCAGATCAAAGATTCTGCTTGCGTCCGTGATCCCTGGAACAGAAACGGGCATAGTGCATGCACTTTTATATTGACTGAAATGAACTGCTCAGTCTAATCATAGGTATATTCCCGTAACCCAACCTTGTGAAAGTTGACAAGTGTGCCATCATTTTTGTCTGGCATTAGACACTGCTTCTTGAGATGACTTGTGTTTAATGAACCAACTGTTGTTAGTCAAATGAAAGGGAACACACTTCAATTCACCATTTGCTTTTCTATTAATGGAAAAACTATTGTTTCAAGATTAGAAAACTGCATTATACCTTTTTCTAgaagtactgtaatgtactccttttttttttttttactaccaGCAGTGTTAGCTATATCAACAGGTGAAATAAAAAGATTTACATAATTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU782670 lncRNA upstream 7849 23739443 ~ 23739657 (+) True G687337
TU782667 lncRNA upstream 10892 23736341 ~ 23736614 (+) True G687334
TU782621 lncRNA upstream 24272 23681103 ~ 23723234 (+) True G687299
TU782677 lncRNA downstream 2198 23759133 ~ 23759472 (+) True G687344
TU782678 lncRNA downstream 2816 23759751 ~ 23795155 (+) True G687345
TU782684 lncRNA downstream 13371 23770306 ~ 23780026 (+) True G687351
TU782776 lncRNA downstream 153617 23910552 ~ 23913767 (+) False G687438
TU782777 lncRNA downstream 153617 23910552 ~ 23913767 (+) False G687438
XM_036985060.1 mRNA upstream 132602 23585720 ~ 23614904 (+) False LOC110529642
XM_036985063.1 mRNA upstream 132602 23585720 ~ 23614904 (+) False LOC110529642
XM_036985061.1 mRNA upstream 132602 23585743 ~ 23614904 (+) False LOC110529642
XM_036985062.1 mRNA upstream 132602 23588981 ~ 23614904 (+) True LOC110529642
XM_036985059.1 mRNA upstream 226248 23484408 ~ 23521258 (+) False LOC110529640
LOC110529209 mRNA downstream 72823 23829758 ~ 23839607 (+) True LOC110529209
XM_036986842.1 mRNA downstream 90254 23847189 ~ 23872593 (+) True LOC110531081
XM_021612039.2 mRNA downstream 122801 23879736 ~ 23882523 (+) True LOC110529647
trnaa-ugc-24 mRNA downstream 198444 23955379 ~ 23955450 (+) True trnaa-ugc-24
LOC110529210 mRNA downstream 208037 23964972 ~ 23991004 (+) False LOC110529210
TU781994 other upstream 223471 23484432 ~ 23524035 (+) True LOC110529640
TU781664 other upstream 774670 22946501 ~ 22972836 (+) False G686448
TU781666 other upstream 774670 22950182 ~ 22972836 (+) False G686448
TU780646 other upstream 1265367 22480323 ~ 22482139 (+) True G685551
TU780557 other upstream 1299433 22446771 ~ 22448073 (+) True G685469
TU782829 other downstream 227510 23984445 ~ 23990999 (+) False LOC110529210
TU782837 other downstream 227510 23984445 ~ 23990999 (+) False LOC110529210
TU784088 other downstream 1225794 24982729 ~ 24984826 (+) True G688613
TU784318 other downstream 1302018 25058953 ~ 25061450 (+) True G688823
TU784988 other downstream 1921717 25678652 ~ 25681727 (+) False LOC110529690

Expression Profile