RNA id: LOC118965656


Basic Information

Item Value
RNA id LOC118965656
length 128
RNA type mRNA
GC content 0.49
exon number 1
gene id LOC118965656
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 23945776 ~ 23945903 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCAGTGATGATACGATGGCGAGTCGGGACGCAGTTGGTCTCTGGGGGTCATGTTCTATGTGTCTAGGTTCAGTTCCCTTAAGCATTGTGTTCTTCAGTTGACGACAGAGGCATTTGTCTGAGAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU783429 lncRNA downstream 102672 23789230 ~ 23843104 (-) True G688000
TU783454 lncRNA downstream 122319 23822905 ~ 23823457 (-) True G688024
TU783385 lncRNA downstream 199055 23746445 ~ 23746721 (-) True G687973
TU783383 lncRNA downstream 200658 23744895 ~ 23745118 (-) True G687971
TU783382 lncRNA downstream 201002 23744573 ~ 23744774 (-) True G687970
TU783618 lncRNA upstream 138157 24084060 ~ 24116642 (-) True G688167
TU783642 lncRNA upstream 171637 24117540 ~ 24117785 (-) True G688191
TU783643 lncRNA upstream 172310 24118213 ~ 24118420 (-) True G688192
TU783796 lncRNA upstream 433400 24379303 ~ 24401141 (-) False G688338
TU783797 lncRNA upstream 452734 24398637 ~ 24401141 (-) True G688338
XM_021612048.2 mRNA downstream 16968 23910501 ~ 23928808 (-) False LOC110529650
XM_036985092.1 mRNA downstream 16968 23910501 ~ 23928808 (-) False LOC110529650
XM_036985093.1 mRNA downstream 16968 23910501 ~ 23928808 (-) False LOC110529650
XM_036985094.1 mRNA downstream 16968 23910501 ~ 23928808 (-) True LOC110529650
XM_021612040.2 mRNA downstream 37256 23885864 ~ 23908520 (-) True trim54
XM_021612045.2 mRNA upstream 6807 23952710 ~ 23955758 (-) True si:dkey-221h15.4
XM_021612053.2 mRNA upstream 179855 24125758 ~ 24194452 (-) False LOC110529653
XM_021612052.2 mRNA upstream 179855 24125758 ~ 24243875 (-) False LOC110529653
XM_021612056.2 mRNA upstream 210462 24156365 ~ 24243880 (-) True LOC110529653
XM_021612057.2 mRNA upstream 337488 24283391 ~ 24290109 (-) True LOC110529654
TU783403 other downstream 188866 23754832 ~ 23756910 (-) True G687979
TU783300 other downstream 308368 23635309 ~ 23637408 (-) True G687890
TU783285 other downstream 324530 23616907 ~ 23621246 (-) True LOC110529643
TU781111 other downstream 1784734 22159030 ~ 22161042 (-) False G685953
TU780900 other downstream 2020868 21920427 ~ 21924908 (-) True LOC110529207
TU783552 other upstream 42196 23988099 ~ 23988854 (-) True G688109
TU783833 other upstream 479160 24425063 ~ 24425553 (-) False G688366
TU783834 other upstream 479160 24425063 ~ 24425553 (-) True G688366
TU783821 other upstream 493062 24438965 ~ 24440200 (-) True LOC110529658
TU783950 other upstream 683651 24629554 ~ 24631049 (-) True G688480

Expression Profile