RNA id: TU782829


Basic Information

Item Value
RNA id TU782829
length 2097
RNA type TUCP
GC content 0.49
exon number 11
gene id LOC110529210
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 23961761 ~ 23991295 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATATTTCCTGTGTATTTCTGTGCCACTGTCTGTGGCCATGAGGGTAGCGACTCAATGTTTCCTTTGTGTGTGTGACCTCCCCCAGGCTGCTAAGTTGGCCATCAAGTTCCTGACCCAGGAGAGGGCTGTAGATGTGATCCACGCTGTGGGCCCTCGCCTCACCCAGCTCAGGAAGTACAGTGCTGCGGCTGAGCTGTACCTCAGCCTGGACCTAATTAAGGAAGCCATAGATGCATTCATCGCGAGAGAAGAATGGAACAAAGCCAAGAGAGTGGCCAAGGAGCTGGATCCAAGGTTTGAAGATTATGTGGACCAGCGAtttaaaaacaacatttgagaaatCAAGGCAAAGAAGTTTCGCTGGTAGGAGTGGATGTCATGGCAGCTCTGGACATGTATGCTGAGAGAGGCCAATGGGAGAAGTGCATAGAGATCGCCTCGAAACAGAATTACAAGATTCTTCACAAGTGTGTGTGGACTTGTACGCCGCCCACCTGATCAAGGAGGGAGATGCGGAGAAGGTGCCCCAGCCAACCCCCCAGAACTACAAGATGATGTTCCTGGACCTGCTGAGCCTGTTAGGTAGAGCCGGCGCTGTCCTTCTGCATGTGGGCTCACCTGAGAGACGTAATGCTGCTGCTGATGAGTACAGGTCCAGAGGGAGACGGGAGACGATAGTGACCGGTCACAACTGTGAGAAGCTGACCAACTCTTTGAGCAGATGCTGCTGATCTCTCACTAATGCGCCACGCGCTGCCAAGGGGTTGACCAACTCTTATATACACCGAGTGAacaatcattaggaacacctgctctttccctgaCATAGACCGAGCAGGTGAATCCAGGTCTATCATCTCTTACTGATGTCTCTGGTGACATAAGTGGTTTATGTGAGAAGTACAGGCCGGGAACGTTTTACTCACTTAACCCTGACAGGTCAGTGTGGCTGCCAAGCTGTCTATCTCCCTGCTGCGCCACACAGAGTTTATCCCAGCTGACAAGGCCTTCTACAAGGCGGGCATGGCTGCCAGGGCTGTGGGCTAGGAGAACATGTCCTTTATCTTCCTCAACCACTTCCTGGATCTGTCTAATGGGATAGATGAAGGGAAACTGGACCACTCTGATTTCCAGGACACGGACATCTCCGAGGTTCCTGTCCCTGCTAAGCTACACGTCACTGATGCCCAGCGTGAGGAGATCCGTGGCTGGGTGTTGACGGTGTCCATGGACCAGCGGATGGAGCAGGTGCTGCCCAACGACGAGAGGGACACCTACGACGCCTCTCTACTGGCAGCCAACACCGGCATCCGCTACCTGCCTTGCGTTATCACAGCCCGGAGTGCCAGGATTTGCTGAAGTTTGTGAGCCTGGCGTGGTGGACTCCCCACCTCCGGCTTCTTCTTCCACTGACAGGACCAAGATGCTGAAAACTCCCATCTTCGTCCAGTGTACCGCATACCCATAACTACAGTAATTTACCATACCGTACTCTGCTTAGAGCCTCTGCCTACTTCTGAGTTATTTaatccatcctctccatctctGGTTTGCTGTTAGTGTTGAACAGTTCACATCATTCCATAACAATAGACTGTTGAGAAGACCTGCTGTGTTACTGCGCCATACATTTCTGCAGCGCTGACATCAGCACAGTCCTTACTTGCATCCCATTGGCCACTTAGTCCCTGATGTCAGGATTTGTGTGTCACCATGGGGATGTCTGTAAAGTTCAGCAGAACATTCCTCTTCTCCTCGGTGTCTGTCCTGTTTTACCTTTTGAATGTGTGTTCATTCCCATTTTCACCTATGTTCCTGGTACTGCTGAAGGACTGGAGTAGGCTACAACCAGAGTGGGTTTTTATTTAGTTGAGGGACATGAAAGATGCCTTTACACTTCAGGTGCTGTATCTTCATAATCAAAGTGCTGTTATCTGTAATACGTGTGCTGTGTTCTAAAAGCAAAGTTCCTGTGTGATAGGAGAATTTGACAGTGCACTTTAGAATACTGTATTGGCTTCATGTATTGTTGGATTAAATGCAGATTTGAATGTATTTCATATGATGGAAatatggttaaataaaaaatattctgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU782846 lncRNA upstream 18423 23961761 ~ 23966022 (+) False LOC110529210
TU782790 lncRNA upstream 52420 23928462 ~ 23932025 (+) True G687449
TU782776 lncRNA upstream 70678 23910552 ~ 23913767 (+) False G687438
TU782777 lncRNA upstream 70678 23910552 ~ 23913767 (+) False G687438
TU782778 lncRNA upstream 70678 23910552 ~ 23913767 (+) True G687438
TU782879 lncRNA downstream 60288 24051287 ~ 24052635 (+) True G687504
TU782901 lncRNA downstream 109274 24100273 ~ 24100669 (+) True G687522
TU782910 lncRNA downstream 129178 24120177 ~ 24122095 (+) True G687531
TU783037 lncRNA downstream 317825 24308824 ~ 24309232 (+) True G687654
TU783059 lncRNA downstream 347785 24338784 ~ 24339645 (+) True G687673
trnaa-ugc-24 mRNA upstream 28995 23955379 ~ 23955450 (+) True trnaa-ugc-24
XM_021612039.2 mRNA upstream 101922 23879736 ~ 23882523 (+) True LOC110529647
XM_036986842.1 mRNA upstream 111852 23847189 ~ 23872593 (+) True LOC110531081
LOC110529209 mRNA upstream 144838 23829758 ~ 23839607 (+) True LOC110529209
XM_021612034.2 mRNA upstream 227510 23747396 ~ 23756935 (+) False znf512
XM_036985095.1 mRNA downstream 8402 23999401 ~ 24116655 (+) False LOC110529652
XM_036985096.1 mRNA downstream 11893 24002892 ~ 24116655 (+) True LOC110529652
XR_005052841.1 mRNA downstream 280503 24271502 ~ 24274025 (+) True LOC118965503
XM_021612058.2 mRNA downstream 305380 24296379 ~ 24297456 (+) True LOC110529655
NM_001160672.2 mRNA downstream 407714 24398713 ~ 24401141 (+) True rpl7l1
TU781994 other upstream 460410 23484432 ~ 23524035 (+) True LOC110529640
TU781664 other upstream 1011609 22946501 ~ 22972836 (+) False G686448
TU781666 other upstream 1011609 22950182 ~ 22972836 (+) False G686448
TU780646 other upstream 1502306 22480323 ~ 22482139 (+) True G685551
TU780557 other upstream 1536372 22446771 ~ 22448073 (+) True G685469
TU784088 other downstream 991730 24982729 ~ 24984826 (+) True G688613
TU784318 other downstream 1067954 25058953 ~ 25061450 (+) True G688823
TU784988 other downstream 1687653 25678652 ~ 25681727 (+) False LOC110529690
TU785811 other downstream 2142192 26133191 ~ 26195544 (+) True LOC110529702
TU786082 other downstream 2390129 26381128 ~ 26383426 (+) True LOC110529706

Expression Profile