RNA id: XM_021612053.2


Basic Information

Item Value
RNA id XM_021612053.2
length 3362
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC110529653
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 24125758 ~ 24243880 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGACTTCTCTAGTCAGCCAGCTCTGACTAACAACCAGCCTGCCTCACAGCTAGAGATTATTACAGAGTGGGCTCTTCAgagcacaatacaacacacacactctcctcctcacacacacacaccggcttgaacacacacacagaaacacacagccaggtgcTTCGGACCGAGACGTAGATTCTAGCAGTTATTTGTCTGTTTGAGCGGTACAGAGAGGAGCAAAGTGGAAATGCCTTCGCGAAACCTGGACTGTGATATCTTTGTCCTCATTGCCTGTGTGGTGGACGTTGAGGTGTTCACCAGTCAGGAGGTCAAGGAGATGTTTGAGGCTCTGTTCCTGTCCTACGATGAGCGGGTGACGTTCCAGCTGTTCAAGAGCTTCCGGCGTGTCCGTATCAACTTCAGCAACCCCAAAGCAGCCGCAAGCGCCAGGATAGAGCTGCACGAAACGCCCTTCAGGGGCAAGAAGCTCAAGCTCTACTTCGCTCAGgtcCAGAACCCAGTATCAGATGGTGATAACCTGCACCTGGCTCCTCCTCAGCCCTCTAAACAgttcctcatctcccctcccggCTCACCGCCCATTGGCTGGCAGCAGATAGACGAGGCTACGGCCGTCATCAACTATGACCTGCTCTATGCGGTGGCCAAGCTGGGCCCCGGAGAGAAGTTTGAGCTGCATGCGGGAACAGAGTCCACTCCCAGCGTCGTAGTCCACGTGTGCGATAgcgacacagaggaggaggaagaggaaccaAAGAATTGCCCCAAACCAAAAATCATCCAGACCCGGCGCCCTGACCTTCCTGTGTCCAACTGAACTCTGTCCCCCTGCCACTTCCTTCCGTAACATCCTCGTGTGGAGGAAGGAgaatttgaccccccccccccaatctctcTCACAGGAACATTCCCCATGTTCAGCCTTCCCGCCTTAAGGCTGTCCACCTGGGCCAGAGGGGGAGTGATCTCTGTTCCTCGTCCTCGCCGACATACAGCCGTTGATGTGCTACATGTATGATCACAGAGTTAGTTTCCGTCCACTATCATTTTCACATTTCTAGTTGCAGCCACCATGCCCTCAGTGATTGGTTCCTCTCTTTATGATTCTGTTGATGTAATGTCACACAGTTAGCAGTGATGGGGCAGCACCTTGCTTTGAGCTCTTAGCGGTTGTGGTGCATGCCAGTTTAAAGAAGCCCATAGGTCGCTTTTATGGACTGTTTGCTGGACGTTAGCTTTGCTCTCGCACCACTGCGTATGTACCACAAGCACTAATGATGAATAGCACTTCTCTCATCAGGGCATGTTAGCCACTGAGGTGGTGAGGGACTGGCGCTGCATGAATTGAAGTAACCCTAAGGAATATTATAAATACTCAATACTTAAAGTTGTCAGAGGTTGTTCCTCATGTTGTCAGTGCTGTCTGTCGACcatgggatttttttttatcttgcCAATGCATGCACTGGTCTGATACAGTTTGTGTATTTACTTTGCTCCGTTTGCTGTATGTAACTGTCAatgtgacctctctctcttctctatcttctctctctcctccctgggtGTTCTGGCTATCGGTGTTCTTCACAGAAAACAATGTTTAAACCTGTTACAATCCATGCGCCTTCAAGtgaaaacattatgtacaatgaTATTTCTGTGATTTTTCCTCAATGTGAATTTTTCTGTGTCCATGTCTTGTCCCTGACAGTCTGTTTTAAAGAAAGTTGGGGGAAAAGTGaactaagaaaaaaaaacagaatgacCTTTTCCTCCTAGGTAAAAAAATGGATAGCCAATTAGATGTCATCACGTAAGGACAGTCTATAAAGTGCATGGTTACATTTTTATAGAGATATTGTGTTGTTTGAGAACAGTGGTTCAGGCATGGGGTTTCCTTGCAGTTTGTGTGCTTCTgtagagagtgagaaagaaacaTTTATTCAGACTCATAAGGAATAAGAAAATGCATCACAACGATCTTGTGAGGAtggaaaaaaaaaacgtattatcTTACACAAAATGTTCCAAGTGCTATTACACAGTTTCTGTGAAAATGGTCAAGGGGAATGACATTCACTCACACAATCATTTTTGTTTCCCTTTGTGTGTTTTGTTGAGTTTTTCCTGTGTTGGTGCAATGAGTGTCTTGGTATGCCTGAATACCTTATAGGACTATAGAACAAGCTCTGTacaaaatgcatttaaaatgCCCTGTCTGTTTGTGGAGAACGGGCGTTGTGATCAGTTTGCTATTGGCCCTTCCTTTTTTAGACACCTTTTTTAGACACTACACCAACACTGAGATTCTACACTGAGATTCATTTTTTTGACACACTGATTCCACCCTGGTGCttttctacactctaaccactcagCCTGTAACCTCAGTGTCTGTGATTTCAACCCCGatctctgatgatgatgatgatgatgatgacaaatCCAATGGTCTGATTTGATGACCCAGTTCAAAGTGTGATGATTGATAATATGGTTTACTTCACCAAGCTCCAGTAGGTTGCGCTAAATGCCCTTTTCTTCTACCTGCAATATTTCCCCATCTGCTTATAATTGACGTTTAAAGCAGATCAAATGTTGTTGGTAATAATGTGCCACTATCCTTTTTGAAAAACACAGACATCAAATGAAATTGAATACGGTCCACCAGGTTTGAATCATGGAACATTTCTTTCTTTCAAATGTTTGGGGTAACAGTAGTCCTTCATCCTTGTTTTGTTTCGTACATGCTGGTTTTAAGACACTCTTCCCTCACTGCATTTATCTGATGGTTACCAACAACACAATAACATGCCCCTGTCCAAATTATGTACTACAGCCACCATTACAACCCAAAATGAGGTGACTTGTATACATGCAATGACTTTGTTTCTAGATTTTGGTGTTTTTCGCCTAGACCCCTGGTCTGTTGAATCTGCTCTATAAGCTTGTCCTGCAGTCATATCCTTAAACATAAACTCAGTAAGAATTCTGCATGTTGTCAATATGTACCTGTATGTGATTCAAAATGTCCAGATATTTGTATTTtactgatttttttttctccaattattttttaaatcaaattattGTCTGTTTTATTCTGAGAGTCTGTTGGATTGGGAAGTAGTATCAGTGATGGGGGGGGACCAATATCTTTATTGTGTAAAACTTGTGCAACACCTTCAATGTACTTGTCATTCTACATGTACAACCTGCCTGCCTACACTAAGGATACATATCTGTATATATTAATCAATACTATTTTTACTGCATTTTTGTACAAATATTCATGGTAGCCATGTAAAAGTAGTTGACATGATTCTACGGTAGTATTAAAAGAGTTTGGTTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU783643 lncRNA downstream 7338 24118213 ~ 24118420 (-) True G688192
TU783642 lncRNA downstream 7973 24117540 ~ 24117785 (-) True G688191
TU783618 lncRNA downstream 9116 24084060 ~ 24116642 (-) True G688167
TU783470 lncRNA downstream 30828 23843168 ~ 24094930 (-) True G688038
TU783429 lncRNA downstream 282654 23789230 ~ 23843104 (-) True G688000
TU783796 lncRNA upstream 184851 24379303 ~ 24401141 (-) False G688338
TU783797 lncRNA upstream 204185 24398637 ~ 24401141 (-) True G688338
TU783837 lncRNA upstream 235425 24429877 ~ 24434825 (-) True G688369
TU783843 lncRNA upstream 251369 24445821 ~ 24446118 (-) True G688375
TU783819 lncRNA upstream 252964 24447416 ~ 24449348 (-) False srp09
XM_021612045.2 mRNA downstream 170000 23952710 ~ 23955758 (-) True si:dkey-221h15.4
XM_021612042.2 mRNA downstream 173240 23928936 ~ 23952518 (-) True cpsaseii
XM_021612043.2 mRNA downstream 173241 23928936 ~ 23952517 (-) False cpsaseii
XM_021612044.2 mRNA downstream 173241 23928936 ~ 23952517 (-) False cpsaseii
LOC118965656 mRNA downstream 179855 23945776 ~ 23945903 (-) True LOC118965656
XM_021612057.2 mRNA upstream 88939 24283391 ~ 24290109 (-) True LOC110529654
XM_021612063.2 mRNA upstream 103490 24297942 ~ 24397834 (-) False ncoa1
XM_021612062.2 mRNA upstream 108640 24303092 ~ 24375063 (-) False ncoa1
XM_036985100.1 mRNA upstream 108640 24303092 ~ 24387726 (-) False ncoa1
XM_021612060.2 mRNA upstream 108640 24303092 ~ 24397834 (-) False ncoa1
TU783552 other downstream 136904 23988099 ~ 23988854 (-) True G688109
TU783403 other downstream 368848 23754832 ~ 23756910 (-) True G687979
TU783300 other downstream 488350 23635309 ~ 23637408 (-) True G687890
TU783285 other downstream 504512 23616907 ~ 23621246 (-) True LOC110529643
TU781111 other downstream 1964716 22159030 ~ 22161042 (-) False G685953
TU783833 other upstream 230611 24425063 ~ 24425553 (-) False G688366
TU783834 other upstream 230611 24425063 ~ 24425553 (-) True G688366
TU783821 other upstream 244513 24438965 ~ 24440200 (-) True LOC110529658
TU783950 other upstream 435102 24629554 ~ 24631049 (-) True G688480
TU784009 other upstream 486515 24680967 ~ 24681426 (-) True G688537

Expression Profile