RNA id: XM_021612060.2


Basic Information

Item Value
RNA id XM_021612060.2
length 5205
RNA type mRNA
GC content 0.60
exon number 21
gene id ncoa1
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 24297942 ~ 24397937 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACGAGCTAAACTGTTTGCgtagggagatgttgaaaatggCGGAGTATAGAGACCAACGCGACAATTAAAATATTAGTTAACCGTGAATGACAATTTAAAAACAAACGCAAGTTCTATTTCGGAATAACTTAATTTAAGGAGAGACATGGAGTATAGTTGAACACATCGAATTGGTTTTGAAACTGGCTTTGAATTAGCTAGCGTTGCTAATCTCGCTAGTTTCAAtagtgatttttttatttttttttaatcgcaGGTTTGTTTGTCAACAGCTGACGTTTAGCCACCAACCAACTTTTCCCTTACCAGTGCCAAACTACAGCACCAGATCACATTGTCCATAGCGTGTGGAAGAGACTTACGGAGCGGCGGATCAGAAAATCAAGGCAACCGAACTAAGGTCCAGCTCGCTCGCCCCTCCCCAAGTGGGATGGTGTTACATGACGGGGAGGCCATGGCGCCGTAGCCCCCTTTCCTggatcctgcctgcctgccagcccgCCACACCACCACCCCCCTCAGAGCAGAGGACCACCGCCACAGCAGCCCCCCCATGAGTCACCCTCTGGAGCCCTAGATCAAGTGTGCTGGAGCTCAGAATGAGTGCTGTAGGGGAAAGGGCACTGGAACCTGCCACGTCAGAGCCTCGTAAGAGGAAGGGCTCGCTATGCGACATCTCAGGCCAGAGTGTGGAGAAGCGTCGGCGGGAGCTGGAGTGTCGTTACATAGACGAGCTGGCCGAGCTCCTGTCTGCCAACATGGGCGACATCGCCAGCCTCAACGTCCAGCCAGACAAGTGCCACATCCTCAAGAGCACCGTGGACCAGATCCAGCAGATCAAACGGCGCGAGCAGGAGAAAGCGTCTCTAATATCACCAGAGGACAAGGTGCAGAGGAGTGACATTTCGTCCAGTAGTCAGGGCATGGTGGAGAAAGAGGCTCTGGGGCCGCTGCTGCTCGAGGCCCTGGACGGCTTCTTCTTTGTGGTCAACCGCGAGGGCCGGATCGTGTTTGTGTCAGAGAATGTGACGGGTTACCTAGGTTACGCCCAGGAAGAGCTGATGACCTCCAGCGTGTACAGCATCCTCCACGTGGGAGACCACAATGAGTTCATCCGCAACTTGCTGCCCAAGAGCCTCGtcaacGGGGTGCCGTGGCCCCAGGAGCAGGGCTGGAGGAACAGTCACACGTTTAGCTGTCGGATGCTGAAGAGGCCCCCTGACGAGGTGGACTCCGAGAACCAGGAGGCACGGCAGCAGTACGACATCATGCAGTGTTTTACTGTCTCCCAGCCCAAAGCCATGCAGGACGAGGGAGatgACCTGCAGACCTGCCTGATCTGCATAGCCTGTCGGATGCCTCGCCCCCAGCAGCTCCCCGCTATCAGCACTGAGTCCTTCATCACCAAACAGGATCCCACAGGGAAAATCATCTCCATAGAGACCAGTGCTCTGCGGGCGACGGGGCGACCAGGCTGGGAGGACCTGGTCAGGAAGTGCATCTACGCATTCTTCCAGCCACAGGGGAAAGAACCCTCCCACGCCAAGAAGCTGCTCCACGAGGTGATGACCCATGGCACGGCCATCAGTCCTCTTTATCAATTCAACCTGAGCGACGGGACCCCCCTCAGCGCTCAGACCCGCTGCAAGTTCTGCTGCCCCCCCAAATCCGACGTTCAGCCCTTCATCATGGGCATTCACACTAttgacagGGAACACAACACTGCTAGCTCTCAGGAAAACACTAACTCCAGCCTTCTACTGACCCATGGGAGCCCTgcttcctcccaccctccctgTTCCCCTTCCCTACCCACGGGCATCGAGGCCAGTCAAGCCCCAGGCCCCACCTCAAGCCTCCATCTCAACAACGGAAACAGCTCCGGCACCACCACACCCACCAGCCATTCAGCAGGGTACCTGACGCCCAACCGGTTGTGTCCTCAGCAGGTCAACAGCCCCTCACCCCTGGGCAGCCCCCTCACAGCCATCCCTACCTCATTCATGTCGCCCAGGCCCCCCAGGGGCAGCCCGGGGCTGGGCGGCAGCCCACGCGTCCCAGGGAACCCCTTCTCCCCTTCCACCCCTGGCCTGCACTCTCCAGCAGGGGCCttaggaggtggaggtggtggtgggagCGGTGGAATCCTCAGCAGGCAGCACTCTGGTGGGGACGGTGGAGCAGGGACCCCCCTGGGTttctctctgccctcccctctACCTCAGAGGAAGGCCAGCACCCCCACCAGCTCCCCAACGTGCCCTCCCCCCGCCAAGCCCCctgagggaaaaggaggaggtggggaaggagaGTACCTGGGGGGTAACCCCAAACTCAACCAGCTCCTGGACAATGGCAGAGTGGGGCCGCCTGGGGACCCCAACAACACCGCTCCTAACACCCACCCCAACACACTCACCTCCACCCCTCAGTGCCCGGCCTCCCACAGCACGCTGACGGAGCGCCACAAGATCCTCCACCGCCTCCTGCAGGACAGCAGCCCGGCCGAGGGCGGCAACAGCAAGGAGTCTGAGATCAAGAAGGAGCCTCCTGCTAGCCCTGCCACCGCCAACCCCAACGgaccccccaccaccccccagGACCACCAGCTGCTGCGCTTCCTGCTGGACACGGATGAGAAGGACTTGAGAGACCTGCCCCCTCCGGCCGCTCTCAGCCTGCAGACGGTCCGGGTCAAGACTGAGAAGAGGGCCACCGGGGACACTACGCCCTGTGCTGCAGCCTGCGCCAGCCCCAAACCCAAACCCGGCCCTGCAGACAGCAGACCGCCCAGAGACCCGtTCCCCAGTGGACCTGCTGACCTGGACCCTCTCAGCCAGCTGCTGCCCACCCTCAGGGGCCCCGCTGGGGCCAAGCAGGGCAGCAAGGAGAAGGGTGACCCTCAGGCCCTGTCGTCCCATAGCCCCCAGACCCAACCTCAACCTCGGCTCCAGTCACCTCCACAGCCTCGGCTTCAGTCCCCCTCCCAACCTCAACCCCAACTTCAGTCCCCTACTCAGGTCCAGCCTCAGAACCATCTTcagtcccctctccagtcccctaCCCATCTCCAACCCCAGAACCAGCTTCAATCCCCTTTCCAGTCCCCTACCCATCTCCAACCCCAGAACCAGCTTCAATCCCCTACCCTACTCCAGCCCAGCGAGGCCAACGTACCCAGAGCCATGAACGTGAAGAGGGAGCCTCCCGGAACACCAAGCCGAGGGCTCACGGATGGCTCCTCCAGCCTGCAGAACCAGTCACACTTTGACTTCTGCAGCCCCACCACCCCCAgccagggacagggacaaggGGAGCCATTCCAGACACCGAAAGACAGCAGCAGCCCCTACACAGAGCCTGGACTCATGAACTCGTTCAACTCCAACACCGGGTTGTCTAAGATGGAGACGGACTCTCAGCAGTTCCGGCCTCTGGCTCTGACTGACTCTCTGTCCTTTGATGGAGGCATGGGAAACCCCGTGCAAGCCTCTCTGGCCTCCCCTCAGGAGCAGTGTGTCCCGTGCCCGCTGGACCAGCTGTTGTGCCCCCCCACCACCCCAGAGGGTCGTAACGATGAGAAGGCCCTCCTGGACCAGCTGGTGTCCTTCCTGAGTGGGACGGACGAGAGCGAGCTGGCAGAGCTGGACCGAGCACTGGGCATCGACAAGCTGGTACAGGGCGGCTGCTTTGACCCCACCCCTCAACGGTTTCCCTCCCAGCCCCCTGCCGCCACTCCCATCTCGATGGACCCAAAGCTGCCTGGCTACCCCTCTCAGTTCAGCACTGGCGCCCCTGCCCAGTTCCCTCGAGAGATGGGGCAGGGTATGGGGGTCTTTGGGGCACCCAGGGGGGCCTTCCCCGTGGGCATGGGCAGAGCGCCTGGCGTTGCCAACCAGCTCCGACTGCCACCCAACCAGCTGAGGTTACAGCTGCAACAGAGGCTGCAGGGCCCACAGCAGctGCAGAACAGGCTGGCTGCCATGAGCCAGTTCCCAGGGGGAGCTCACGTTGCCATGGGGATGCGTCAGGGAGCGCAGCAGCCTCATATACCCTCTCAGCCTCCTCTAAACGCCCAGATGCTGGCCCAGAGGCAGCGGGAGCTCTACAGCTTCCAGCACCGCCAGAGGCAGCTCCTGCAGCAGAAGGTCATGTTGATGAGGCAAGGCATGGGGACCGGGGGGCCTATTGAGGCCACCAGGGGACTAAAAGGACCCCAGCCACAGCAACAACAGTTTAGCTACCCTCCAGGCTACAGCCCCATGTCAGGAAACCAACCCAGCTCTCCCAGCCTCTTCAATCCCATGGGAGGGCCCCTGGACCCCAAGCTGTCGGGCCTGGGCCCCATGGGCAGCCATTCAGCCATGATGGGTGGGATGCAGGGACAGTTTGGGGGGGGAGTGAACTCGGCGGTCCAGCCTGGGCTCTTCCAGCAGTTTGGAGGACCGGGTATGGTCCAGCAAGGAGACCCCTCGTTCCCTCTAGAGCTCAGCCCCACCAGCCCCTTGCTGTCCCCTCAGAACTCCACCTCCCAGAGTCCTCTGCTCCAGCAGGCCCAGCCTCCTCCTGGGTACCAGTCACCTGACATGAAGAATTGGCAGCAAGCTGGCATGGGCGGCAACAGCTTATTCAGCCAGACTGGTCAGACGACGCCCCAGGCCTTTGGGCAACAGGGGGTCTACAACAACATGAGTATCACCGTGTCAATGGCAGGAGGCTCAGGGGGTGTGGGCTCACTGCCTCCCATGGGACCACCCGTTGGCCTGGACAACAGTAACCTTGGCAACTCCATGTGTAACGATCAGgTACAGCAGGTTCAAGTGTTTGCCGACGTCCAGTGTACGGTGAACCTGGTGGGCAGCGACTCCTACCTAAACCAGCCGGGGTCCATAGGCCCCCAGAAAGGACCCCAGGGGCCTCAGAGCAGCCAGTCCCAGCAGAAGAGCCTCCTCCAGCAGCTCCTCACAGAGTGACTCCTCAGCTCAGCTGCCTGCCAGCGGAAAGGTTCTCCATAGACCACCACAACCTCTTTTCTTTTTCACCTTTTGGTTTTAGACAGCTACCTGCTGGACTGGTTAGGAAGGCCCTGGGAGGGAGACTGAGGTCCAGGTAACAGTCTGTCTACCTACCTGACAGCCTCAGCTCGTACCGTAAGACCGCAACGATCGTTCAGCACTCATTCCTGGTTACATACTTTCAACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU783643 lncRNA downstream 184672 24118213 ~ 24118420 (-) True G688192
TU783642 lncRNA downstream 185307 24117540 ~ 24117785 (-) True G688191
TU783618 lncRNA downstream 186450 24084060 ~ 24116642 (-) True G688167
TU783470 lncRNA downstream 208162 23843168 ~ 24094930 (-) True G688038
TU783454 lncRNA downstream 479635 23822905 ~ 23823457 (-) True G688024
TU783797 lncRNA upstream 803 24398637 ~ 24401141 (-) True G688338
TU783837 lncRNA upstream 32043 24429877 ~ 24434825 (-) True G688369
TU783843 lncRNA upstream 47987 24445821 ~ 24446118 (-) True G688375
TU783819 lncRNA upstream 49582 24447416 ~ 24449348 (-) False srp09
TU783820 lncRNA upstream 49761 24447595 ~ 24449348 (-) True srp09
XM_021612057.2 mRNA downstream 12983 24283391 ~ 24290109 (-) True LOC110529654
XM_021612056.2 mRNA downstream 59212 24156365 ~ 24243880 (-) True LOC110529653
XM_021612052.2 mRNA downstream 59217 24125758 ~ 24243875 (-) False LOC110529653
XM_021612053.2 mRNA downstream 108640 24125758 ~ 24194452 (-) False LOC110529653
XM_021612045.2 mRNA downstream 347334 23952710 ~ 23955758 (-) True si:dkey-221h15.4
XR_005052842.1 mRNA upstream 7077 24404911 ~ 24411834 (-) True LOC118965504
XM_021612065.2 mRNA upstream 38663 24436497 ~ 24438647 (-) True LOC110529659
XM_021612064.2 mRNA upstream 41133 24438967 ~ 24446940 (-) False LOC110529658
NM_001160617.2 mRNA upstream 49759 24447593 ~ 24449335 (-) False srp09
XM_036985111.1 mRNA upstream 341223 24739057 ~ 24795413 (-) False LOC110529662
TU783552 other downstream 314238 23988099 ~ 23988854 (-) True G688109
TU783403 other downstream 546182 23754832 ~ 23756910 (-) True G687979
TU783300 other downstream 665684 23635309 ~ 23637408 (-) True G687890
TU783285 other downstream 681846 23616907 ~ 23621246 (-) True LOC110529643
TU781111 other downstream 2142050 22159030 ~ 22161042 (-) False G685953
TU783833 other upstream 27229 24425063 ~ 24425553 (-) False G688366
TU783834 other upstream 27229 24425063 ~ 24425553 (-) True G688366
TU783821 other upstream 41131 24438965 ~ 24440200 (-) True LOC110529658
TU783950 other upstream 231720 24629554 ~ 24631049 (-) True G688480
TU784009 other upstream 283133 24680967 ~ 24681426 (-) True G688537

Expression Profile