RNA id: NM_001160617.2



Basic Information


Item Value
RNA id NM_001160617.2
length 756
RNA type mRNA
GC content 0.39
exon number 3
gene id srp09
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 24447416 ~ 24449348 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGTTTTTAAGAAGTTAGCTTGTAAACCTCACAGGCCAATTTAACCAGTTTTTCTCTTAGATTTTAGTTCGTATTCACACGGATTATGCCTTACTATCAAACATGGGAAGAGTTCGCTCGTGCAGCAGAAAAACTATATTTGACAGATCCAATGaagGTCAGGGTGGTTCTCAAATACAGACACTGTGATGGTAACCTTTGCATCAAAGTCACCGATGATGCAGTGTGTTTACAATACAAGACGGACCAGGCCCAGGACGTGAAGAAGATAGAGAAACTGCATGGCAAACTGATGAGGCTTATGGTGTCCAAGGAAAGTGGTGCCATGGAAATGGACTGAACCCCCTTACACATAGTTGTATTAACTCTTCTTTGAGTCTAGACTGTGGTGTCAATAGCACAAACGGAAGAGAACGGAGCTGGAATGACGACGTTGGATCATGAGAGGGGAAATCAAAAATGAAAATGGAGAGCATAACCTTCGCTGCTCTAAAGAGGGATTTGCTGAACCTCTTTTAAAagagcttttatttattttcatttttaagATGGACTAAAAACAGATGGAGAGACGCATGTCTAtttatgtatgttttttttttcacatcTGGAAACGTTCATGAACATGTTTAAGTGAATATGAATGAAGCATGACCTTTTTGATATTCGCACATGCTATTTTAGTGGAAGAAACATGCCTCCAATGTAATTTAGTAAACTAATAATTGcgttactcaataaatgtttatATACCCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU783843 lncRNA downstream 1475 24445821 ~ 24446118 (-) True G688375
TU783837 lncRNA downstream 12768 24429877 ~ 24434825 (-) True G688369
TU783796 lncRNA downstream 46452 24379303 ~ 24401141 (-) False G688338
TU783797 lncRNA downstream 46452 24398637 ~ 24401141 (-) True G688338
TU783643 lncRNA downstream 329173 24118213 ~ 24118420 (-) True G688192
TU783914 lncRNA upstream 112718 24562053 ~ 24586713 (-) True G688446
TU783933 lncRNA upstream 142000 24591335 ~ 24591789 (-) True G688464
TU783935 lncRNA upstream 148374 24597709 ~ 24597938 (-) True G688466
TU783936 lncRNA upstream 148811 24598146 ~ 24598442 (-) True G688467
TU783961 lncRNA upstream 203195 24652530 ~ 24652894 (-) True G688491
XM_021612064.2 mRNA downstream 653 24438967 ~ 24446940 (-) False LOC110529658
XM_021612065.2 mRNA downstream 8946 24436497 ~ 24438647 (-) True LOC110529659
XR_005052842.1 mRNA downstream 35759 24404911 ~ 24411834 (-) True LOC118965504
XM_021612059.2 mRNA downstream 49656 24303092 ~ 24397937 (-) True ncoa1
XM_036985098.1 mRNA downstream 49759 24303092 ~ 24397834 (-) False ncoa1
XM_036985111.1 mRNA upstream 289722 24739057 ~ 24795413 (-) False LOC110529662
XM_036985110.1 mRNA upstream 289722 24739057 ~ 24795414 (-) False LOC110529662
XM_036985108.1 mRNA upstream 289722 24739057 ~ 24795416 (-) False LOC110529662
XM_036985109.1 mRNA upstream 289722 24739057 ~ 24795416 (-) True LOC110529662
XM_021612083.2 mRNA upstream 543200 24992535 ~ 25010299 (-) False LOC110529665
TU783821 other downstream 7393 24438965 ~ 24440200 (-) True LOC110529658
TU783833 other downstream 22040 24425063 ~ 24425553 (-) False G688366
TU783834 other downstream 22040 24425063 ~ 24425553 (-) True G688366
TU783552 other downstream 458739 23988099 ~ 23988854 (-) True G688109
TU783403 other downstream 690683 23754832 ~ 23756910 (-) True G687979
TU783950 other upstream 180219 24629554 ~ 24631049 (-) True G688480
TU784009 other upstream 231632 24680967 ~ 24681426 (-) True G688537
TU784418 other upstream 286711 24736046 ~ 24737040 (-) True G688922
TU784591 other upstream 547430 24996765 ~ 24997835 (-) True LOC110529665
TU785239 other upstream 926787 25376122 ~ 25407347 (-) True G689656

Expression Profile