RNA id: XM_036985108.1


Basic Information

Item Value
RNA id XM_036985108.1
length 2467
RNA type mRNA
GC content 0.41
exon number 7
gene id LOC110529662
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 24739057 ~ 24795416 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTATAGGTTAACTGTGGTTTGAAGACACCGTTTATTACGAGTGCCAGGAGTGTTGCGGAGCTCCTATTTTAATACCGCCACATTGTAGCCAACCAGATTATCTTTAGTAATTTGCCTGTCCAAAGCATTCTTCCTATCCGGGATGTTTTTGAGCATAATTTGGATCTCTTGATATCCATTTCAAGACATCGCTTGgatttatattatttatattcttGTTGTGTAATCTCTGCATTGAAATGTCTGTCGTTTTCATCAAGTCTAGGCCACTGGTCTAATTTCCAATTAAGAAATTGCGCCGCAAAACGTTTCGACTTCAAAGGGAGACCTTGGATGCGCGTTTCGTTGGAGACGTTCTGCAACAATTTGTTGCAAACATTAAAAGCAAAGTGATGGATGGAGTCGTTATCACCTCGGTTTGCCATAGCACTTTAATCATTTCGTTTTTTTAAGTCCTCTTTTCGTCCTCTTTTCGTGTATTCAATTATGTTCACTTTCGCTGCCTTTTGCTATATGCTGTCACTGGTCCTCTGTGCTTCCCTGATATTCTTTGCGATATGGCATaTAACAGCCTTTGATGAACTGCAGGCAGACTTTAAGGTCCCCATCGATCAGGGCAATCCACTCCATGCGAGAGAGCGACTCCGGAACATTGAGAGGATTTGCTGCCTGCTGAGAAAGttgGTGCTTCCAGAGTATTCTATCCATGGGCTGTTCTGTATCATGTTCCTGTGTGCCCAGGAGTGGCTGACAGTAGGCCTCAACATCCCTCTGTTCTTCTACAACACATGGAGTAGGTACTTCCACAGCCCCACAGACACTAAGGAGCTCCTCTACGACCCAGCCTCGGTCATGAACGGGGACACACTCAAGTTCTGCCAAAAAGAGGCCTGGTGCAAGATGTCCTTCTTTGTCCTGTCTTTCTTCTACTATCTCTACTGCGTGTACTGGACCGGACCTTCCCCTAGTATATGGTCTACTCCTTGGTAACCTCATAACAGCAGAACTCTCAGTATTTGAGCCATCCTCCGGATATCAGAGACTGTTTTCTGGAATTCAAACTAGCTAGCACAAAAACCAACTTTGCAGCAAAAAATAGCACTTTGGGTCACAACTTTTCTGTTTCGTCAGAAGGACAGTCGGTGGGTCTGGTCTGGGGGGAAGGGAAGAATTTCAGCTCCAGTCCCCATTGTCTCCTCAATGTATGTAAAGGGACATTACTGTTTACAGTTCTCTATAGGTCAAAAGTCCTTTATGAGTCACAGTGACCACCATATCTACTTTTGTCCGTCACTGCCCGGCTAATGTCTGTACTTACAGCCTGTCCTGTCCTGGAGAAGTACAGTAGCATCACCACTACCGTAGTAGGGTACACAGTAGTGTTTGCACAGTTTGTCTCAGGCACAGCACATAgaaacacagcacagcacattcGTGTTTGTCATCGGGACAAACAGGTCTTCTTCTTCACCCATCTGCCCTTAGAGTCTCACCGATAGTAGCTTCTTCTTCACTGGTGGGAAGGGGAGATGACACATCCTGTACAGAGACATGGTGAACCTTCTGTTCAGGGACAAGGAAACCGGGTCCGCGAATGTTGCATTTTTACCTGCTGCAATACAATACATGGcctgtgtgtttatatacattacatacctGTATGTGAATGGCTTTTGTGATGTGTGCATTTTGTGTATTCTTAACAAAATCATTTCTAATGGAAATATGATCTACGAAGAATCATATACAAATGGAACATTGTGTGATTCTCTGTGGTTGTAGTGTtgtttggtagagaaattaaagcTTGTTTTTTAGAACTAGAAAAGCAGTAATTCTTCGCACAGTAGTGTAGGCCTATATCATTTTCTTGCCAAATATTTGCGATGTTTAGTTGTGTTTCAATACTCTATAGTCTACCCAAATGAGCAAAGGTATCACTGTTTCCATAATGGACCGAATGTGGTACTTATTCATTCACTTAAATTATTCATAGTCATTTAAAATGAATTGTTTCCCTTCACACTTTGTCCAAAATACTTTTCAGCAAATATAAGTGAATGGCATATCAGCCTCCACTGTAAGATGACTAATATATCAACTGAATGACACTGTTAATGTTCTAACTACCCCCTCTGTCATTACCATTAGCTAGCAGATGCTGCCAATAATGAAACAGTGTCTGAAAACAGCTATGGACTTCAGAGCTTTTGGCAATGCTGTTTCATTTGATTGTCTTTCAGAGAATTCATTGAGAATTCAATGCTGTCGGTTTGCCGCATAGTTCGTAATCATGCATCTTTGCGCAGAAGTTTTGCATTAACCTTTACTCAAGGACAAGACAGGAATGCCCATATTGTTGTTTTCTTATTTAAGAGCATTTTGTATGTTTGCTGTGTATGTGTCAACCTAAGATGAATTTAAATAATTGTTTATGAAATAAAGTATGACTATTTTAAAATGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU784078 lncRNA downstream 6961 24731830 ~ 24732096 (-) True G688605
TU784056 lncRNA downstream 25803 24712988 ~ 24713254 (-) True G688584
TU784055 lncRNA downstream 26303 24712465 ~ 24712754 (-) True G688583
TU784036 lncRNA downstream 37124 24701506 ~ 24701933 (-) True G688564
TU783961 lncRNA downstream 86163 24652530 ~ 24652894 (-) True G688491
TU784556 lncRNA upstream 132741 24928157 ~ 24928433 (-) True G689056
TU784572 lncRNA upstream 160082 24955498 ~ 24955718 (-) True G689069
TU784573 lncRNA upstream 161146 24956562 ~ 24956818 (-) True G689070
TU784576 lncRNA upstream 164404 24959820 ~ 24960028 (-) True G689073
TU784587 lncRNA upstream 181595 24977011 ~ 24979552 (-) True G689082
NM_001160617.2 mRNA downstream 289722 24447593 ~ 24449335 (-) False srp09
XM_021612064.2 mRNA downstream 292117 24438967 ~ 24446940 (-) False LOC110529658
XM_021612065.2 mRNA downstream 300410 24436497 ~ 24438647 (-) True LOC110529659
XR_005052842.1 mRNA downstream 327223 24404911 ~ 24411834 (-) True LOC118965504
XM_021612059.2 mRNA downstream 341120 24303092 ~ 24397937 (-) True ncoa1
XM_021612083.2 mRNA upstream 197119 24992535 ~ 25010299 (-) False LOC110529665
XM_021612084.2 mRNA upstream 265271 25060687 ~ 25134640 (-) False cd2ap
XM_021612085.2 mRNA upstream 265271 25060687 ~ 25134640 (-) False cd2ap
XM_036985112.1 mRNA upstream 265271 25060687 ~ 25134641 (-) True cd2ap
XM_021612100.2 mRNA upstream 481040 25276456 ~ 25288041 (-) True mep1a.2
TU784418 other downstream 2017 24736046 ~ 24737040 (-) True G688922
TU784009 other downstream 57631 24680967 ~ 24681426 (-) True G688537
TU783950 other downstream 108008 24629554 ~ 24631049 (-) True G688480
TU783821 other downstream 298857 24438965 ~ 24440200 (-) True LOC110529658
TU783834 other downstream 313504 24425063 ~ 24425553 (-) True G688366
TU784591 other upstream 201349 24996765 ~ 24997835 (-) True LOC110529665
TU785239 other upstream 580706 25376122 ~ 25407347 (-) True G689656
TU785268 other upstream 615407 25410823 ~ 25411132 (-) True G689685
TU785308 other upstream 722150 25517566 ~ 25521288 (-) False G689723
TU785310 other upstream 723047 25518463 ~ 25521288 (-) False G689723

Expression Profile