RNA id: XM_021612117.2


Basic Information

Item Value
RNA id XM_021612117.2
length 6126
RNA type mRNA
GC content 0.44
exon number 25
gene id knl1
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 25484214 ~ 25515202 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGTTTTCTGACTGCGCATGCTCAAGAGAGGGCGGTTAAATTCAAAACCAACAACAGCTTTGACGCTTAATAGCTGGCATCTAAAATTGTACTTGAACAACTAGTAGCTACACGATGGAGCCGCCTGATGCTGCATCAAGGACGGATGATCATGTTGGATCCTCCAAACGGCGTATTTCTTCGATCCTGAAAGTTCCACGGACATCTATCAAATTCACTGGCCCAGAGCTAGAGGAGAGTCGGGTGGAGGTGGTCAAGCCAGTAGAGAAGAGGATCTCCAGAAGAGTCAGTTTTGCCACTTCCAATGATGTTCTACTGTTTTCAAAAGATGTGAAGAATGGCTCCCCTGTCCGGAGTCCTCTAAAAAACCTCACAACTACGGCAGAAAACATAAGCATTCATACGGGTTCCATTGATGGTTCTCAACCAATCACAGGCATGGAAACCTTGTTGAATGCTCCCCTCCATGTTTCACAACAAATAAATAAGGAAAATGTAATGTTCAACCAGGATGATTATGGGGAGAAAACAATGATGTTCACAGGAGAGGACACAGCATTTATGGATATGACTCACAGTCACACAATACTCATCGCCAATGATTCAGAATCATCAGTTGTTCTGCCAAATGAAATCAATGTGACTACACCTACCTGTGGAAACATGGATTTTACTTTTTCAATGGAGAAAGGTAAAACTGGGTGTTTTCAGGACTCAACAGAGAATTATGTCCCCTTTAAAAACCCTTCCACCTTAGCCAGAGGTATAGATCCAGAGTTTGAACATTTCCTTGCCAGTATAACGAAGTCAAGTGGCCCCATGTGTAATCCAATAGCTCCCAAATCCTCAACTACTGTGGCATTCCACAGAGCTGCATCCCCTCCAGAAAAAACGAACAACAGACGTTTCCTTGCTGCGCTCAATGCCCGCAGGTCAGGAGTTGATCAAGAGAATCAGCTCCCAGCTTTGTCAGCAACGGGGGGAGACGGTACAGTGGGCTCAATTATCCCTAAAAGGCAAGGGCCTCAGTTCATGAATACATCTACGATGCAAACTGAACAAGATCAAATGGATCTGACAAAAAGCCATACCACTTTGATAGATGGCAAAGGAGTTTTTCAGTGTGTGCAAACTGTAAGCTCTGAAGAGCAACGGCTTAGGGGAAGCACTTTCAGCCAGGTAACTGTCTCTACTGATCCAGATGAAATGGAGTTGACCAGGAGCCAAACTGTTGCCATTGACTCCAAAGCCATTTGGATGTTTGGGCCAAATCCCTCTCAGAAAATTGATAGGAAAAGTGTGGTCTTCACATCAGATCCCAATAAATCCCAGATCTTCTCAGGTGATGACCATGGCATGGAAATAACTTCAGCTCTCAATGTACCTCTCCAGGAGAATGTGTGTGCTCTGACCAAGAAAGGTGAATCATCACCCTGGATGTTTCCCCCAGAAAACAGAATCCCCTCCGTTCAGCAAAATCAACAGACCTTTCATAGCACCTCTTATACATACTCAGATGACATGGAGATGACAAGATGTCAAACAGTTGCCATTGATTCCAAAAGTGTAGCCCTAACGGAAATTCCCTTACTAGGGAATTCAAGGAAGAGTTTGTCTTTTATGCCAGCCTCTCATAGAGGTGTGTTTTTTTCAGAAGATGGCAACGGTATGGATCTGACTGAGGCCCTCACTGGAAATATTGTGTCAAACAGCCATATAGCAATTAATAAGCCACTACAGAGCTTGTTCCCCACAACAGAGATGTCCTTTCACTCTGATCTGAGTACTAACATGGAGATGACTTCAGGACAGAGAAGTAATAAAGTATGGGAGCCTGCATCCTCTGATCCTGATGACATGGAAATCACAAAAAGCCTAACTGCTGTAATTGATTCCAAATATTGTGTGATGGAGAAGCCTTCTCTTAGCAAACCGAAGACCAAGTTTGACCTGGGTCTATCCTATGTGCCACCATCTATGGAATATGGCAATTTCTCAGACGATGCTAATAGTGTGAAGAGGGCGCTGGATCAGGTTAAAGGTTTTTCTGTAGCCATATCGGATCCTGATGACATGGAAATAACTAAAAGTCAAACTGTTGCCATCGACACCAAAAGCCTCAATGTGGTCAATCGCACGCAAAACACAAGGAAAAGTATATCCTTCATGTCAGCTTCCAACAGACCCAGTCATATGTCAGAGGATGACTGTGGTATGGACATGACCAAATCTCTCACTGTGTCTATAGATCACAGAAATGGACTGAACGTGACAGATGAGACCACTGGCAGATTGTTCCCCATATCAAAACACCAAAAGGAAACATTTGAGAAGAGCCTGATTAGAGCAGAGCTTAGTACAGATGACATGGAAATCACAAGGAGCCAAACAGGGGTTATTGACACCAGAGGTTTTGGTGGTGTAACTCCTTCACTCCAAGGTGGTAGAGGAAGATTTGTCGGCTTTTTGGATTCAAATAAAACTCTTATTGGGGAGGACAACAATTGTATGGAGATGACTCAAGCTCTCACTGCACAGATATTAACAAATGTGTCACATTCTGCCCATGGGGGTGAGACCTTAGCTAGGATGTCCACAATCTCAAAGACAAATTTCACTGGAGCAAAGGGCAATCATTTCGTGGAAGTGGGTCACAAACCTGATCAACGTTGGGCATCAGATTCAGATGACATGGATATGACGAGAAGTCAGACCGCTGTAATTGAGTCTGAAAACATCAAGATGGGGAATCGTGACCCTTTCGGGGGAAGGCAACGTTTATCCAGTGTGAGTAAGACCCTGCAGATGGTTCCTCCGGCAGAGCAGAGTGCACATGGTGAGATTACGTTTCAGTTAGGTGTTGAAAGCCTCTGCAGTGAAAAGGCACCTACATCTTCTGActctgatgaaatggaactgacaaGGAGCCAGACTGTTGCAATTGAATCCAAAGTTATTAACATGATGTTTTCCCCTGAAACAAATCCACCTTTAGGGAATGTGTCAATTAGTCAGGCAAATTATATGGAAGTGAAACGAGTAGCAGAAGCGACACGTTGCAGAAATAATCCTGTAGCTGTACCCTCTAACCTGGAGGAGAAGAAAATGGCCAGAGATGAAACTGAAATGTTTTCTGAGGATCATGAAATGGAGATGACCAAGGCTGTCACAACGCAAATTGAACATGCACCTACCAATGTGAAGGGCCCTTCATCCACCACAAATGCAATTTCCTTGTGTCTACCGGAGGGTCACCCTAGAGAAATCCCCACTAACCTTACAGAACACTTTGACCTAAAGGGATTGGCAGACCGAAATGATCCTGATCTGAAAGATGAAGACTGCTCCTTTATTCCTAACAATCCAGAAAGCTCTCCCATTGCCTCTTCAGTCTCAACAGAAGATAATGTACCTTTGAAGAAAGCAAAGACCAGGCGAATGAGTTTGGCAGATCTGCAGTTGAAACTTAATCATATGAGCCGCATGATAAATGAATCCACTGAAGTGATGGGTAGCTGCACTGCACCTTTATCTCACCTGATGAGGACCTCTGACCAACACAGTGTAGAGACAGAATCATTCTCAACTGTAGACTATGGGTCTAAAACCATGGGATTAATGACTGAGAGACCAACAAGTGTCAACTTGGAAGACCATATTATTCACAATGACAAACCTAATATGACTGCTCCTTTAAACTTGAAAAGTAAATGCCTGTCATTTGGTGGTTTCCTGCCCAAACTCCCACAAATAGCCAAACCCTCTGAATCAAACCAGTCCAATAACGTGACAGATTTTGGGAAACTTCTGAAGAAGAATAGCTTGGGTGGCACTCATGAACTGAGGAGCAACACCTCGATGGAGAACATTGACGATGAAGTGCTTCCAGACATTAGCAGTGAAGAGGACTTATCAGAAACTATGGGCACCAAGTCACCTCAGAGGGTCGACGACAAAGGAAATCTTTTCTTAGGCAAGGTGGTCAAGGATGTTGTGGAGCATGAGGTCTTTAAAGAGCCGGTCCTAACTGTTACCCAATGTCAGAAGAGGCCCCTACCAGAAGAGGGCCATGATGACTCCATGGATGAGGTAAAGAGGAATAAGCCATCAACAGAAAACATCAGAGAAATGATCCCCCACACACCAGTAGTTCAGTGGGACATTAACTTTACAGCTGCAGCTGATGGCTCCAGCAGCAACTCCAACCTCCGATGTGAGGGCACATTTGAGTCGTCAACTTACAGACAAAGCCAATTCGAGTCCCTGCTTGACAACACCGGGGACTACACATCTGATGTACTGAAGAAACTCCAAGATGGCAGCATTACAGTGGCTGAGTTCCTGAAACTCTTCAGCATCGACTTTGTCATCCATAAACCTCGACAGAGTATTCTGCCTGCGAGAATTGTGTCGGATCTCGATCGCAAAACAGAGGACTTGTTAATCGAGAAACATATCAACCGTCCCAAACAGAGGGTGTATGAGACAGACTGCCAGATACTCACAGAAATGGTGGAGGGGTTGAAAGCACGTCTGAGAGACCAAGACAGTCTTCTGCAAAGTGTTAATGGAACACTTTGGGAGGCGGCGAAGGGCTTTTCAGATGAAGAGTTGCTGCTTGTTGGTTCAAAGTTGAAAGAGAGGAGAACATTCTTCAGAAAGAGAAGCAAAGTGCGATCTCATGAAATGAAAGCAGTTTTGTACTCTGACCTTGTGCACACAACTCGGGAGGCACAACATAACTTGAGAGGAAATATTGAGAAGACCGATCAGTGTCTGAGAGACCTTGATGAATGTCTACATGACCTGGAAGCTGAACTTACAGCTGTGGAGGGCACAGGGGTAGAGGACTGTGAGCCAACCTTGAAAGCAAGGCAGCAAGGCTTGGAGAAGGTCAACAAAGCAATTGCTGAAAGTGAAAGGCAAATGTGTGAATTGAAACTACAGAAGATAAACTCTGTGGACAAAGTGGACAGACTCCGAAAGGAAACTCTGGAACTTGAGAAACATATTGCCATGCTGGATAGAGTGAATGAATGGAAGTTTGTGCAGAAAGATGACATGAAGACAGTCTACAGCTTTCTCTACGAGTCCTTGCTGTTGGAGGTGCAGTTTGAGAAACCTAACGGAGAGGTCTGTGAACAGACTGAGCGTAACATCATGGACATCACATTTCAACGCCAAATGGATGATGAAAAGTCACCGTGCTACTCTCGGCTTGTACACAATCTGCTATGCCAGTACATAGGCAGTGAAACCACTTGGTTCAAGAAGTACCCCACCAGTCGATACATTCCCGTGctgctgcatgatgtggGTCTGGTGGTAAGCCGCTGTCGCCTCCTGGGAGAAGAGATCCACCTGATGAAGAAGTGGGGCGCTCTGAGGCTGGACATCCTGGACATCAGCTGTGTGGACACACAAGTTCGAATCCTGTTCTCCAGTCTCAAGTCGTTTAGCAAGTTTGAGATGACAGTAGCCGTCACCTCCGCCTACCCCTTCGGTCTCTTTCATGTGCAAAACTTCCAAAATCACATTGGAAACGCAACaaAAGACCAGGTGGAAGACATTGTATCATCAGTCACACCAGCCAAGAACTACTTGACCAAGATTGTCAAGAGGATCCATGAAAGTCTGCTGTGCTGAGACCAGTTCCAGTCAATGGCTATTCTATGTAgtgcagggctgcccaaccctcttcctggggatctactgtcctgtaggttcagtccaaccctaatttaacacacctgattctactaagtagctgctcaacaagaccttgactagctgaatcagatgtgctaaattagggttggactgaacctacaggacagtagatctccaggatgagggttgggcagccctgatgTAGTGAATGAAAATGTGTGTATGTTTCAATTCCATTTGTAAATGTTCAATGCCACATTGTCTTGTTTTAATTTTACATGTTTTCTACCATAAATTTTGATAATTTGTATAATTTTTGTTCATACGGGATCAATAGTAATAGTTGGCCATTTCAAACATCTTTGATGTATTTCCTCTAGCAAAACTATGGCAAGAATTACAATAactgaaaaaagcttgtctgaATCATTATTAAAATGTAACTGCAACTTTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU784918 lncRNA upstream 6675 25497597 ~ 25498338 (+) True G689374
TU784896 lncRNA upstream 37331 25467429 ~ 25467682 (+) True G689353
TU784852 lncRNA upstream 90506 25414192 ~ 25414507 (+) True G689311
TU784850 lncRNA upstream 91602 25412001 ~ 25413411 (+) True G689309
TU784832 lncRNA upstream 97915 25377933 ~ 25407098 (+) True G689294
TU784948 lncRNA downstream 19677 25534879 ~ 25535162 (+) True G689393
TU784950 lncRNA downstream 24142 25539344 ~ 25539646 (+) True G689395
TU784951 lncRNA downstream 25597 25540799 ~ 25541075 (+) True G689396
TU784952 lncRNA downstream 25971 25541173 ~ 25541404 (+) True G689397
TU784983 lncRNA downstream 169323 25684525 ~ 25685894 (+) True LOC110529690
XM_021611227.2 mRNA upstream 97663 25399256 ~ 25407350 (+) False tlr5m
NM_001124744.1 mRNA upstream 98205 25404169 ~ 25406808 (+) True tlr5m
XM_036986833.1 mRNA upstream 126599 25370910 ~ 25378414 (+) True LOC110529215
XR_002474426.2 mRNA upstream 165396 25326353 ~ 25339617 (+) False LOC110529679
XR_005052846.1 mRNA upstream 165396 25335531 ~ 25339617 (+) False LOC110529679
XM_021612119.2 mRNA downstream 2285 25517487 ~ 25521324 (+) False LOC110529684
XM_021612120.2 mRNA downstream 2302 25517504 ~ 25521324 (+) True LOC110529684
XM_021612122.2 mRNA downstream 12011 25527213 ~ 25531103 (+) False LOC110529685
XM_021612121.2 mRNA downstream 12019 25527221 ~ 25531103 (+) True LOC110529685
XM_036985168.1 mRNA downstream 37235 25552437 ~ 25570638 (+) False LOC110529217
TU784318 other upstream 443563 25058953 ~ 25061450 (+) True G688823
TU784088 other upstream 520187 24982729 ~ 24984826 (+) True G688613
TU782829 other upstream 1514014 23984445 ~ 23990999 (+) False LOC110529210
TU782837 other upstream 1514014 23984445 ~ 23990999 (+) False LOC110529210
TU781994 other upstream 1980978 23484432 ~ 23524035 (+) True LOC110529640
TU784988 other downstream 163450 25678652 ~ 25681727 (+) False LOC110529690
TU785811 other downstream 617989 26133191 ~ 26195544 (+) True LOC110529702
TU786082 other downstream 865926 26381128 ~ 26383426 (+) True LOC110529706
TU787679 other downstream 2041082 27556284 ~ 27557019 (+) True jag2b
TU788176 other downstream 2380499 27895701 ~ 27895987 (+) True G692343

Expression Profile