RNA id: XM_021612127.2


Basic Information

Item Value
RNA id XM_021612127.2
length 6544
RNA type mRNA
GC content 0.55
exon number 20
gene id LOC110529689
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 25653300 ~ 25676087 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACTGGGCTGGTGCTGTCTATTTGATGGTGACATCGTTTGTTGCTTTTTTATGGGGAGCAGCATCTGGAATATTGTAGGATGCAAAGGGGTTTCCCAGGGGGCCTGTGAAGATGAGCGTGACATCATGGTTCCTGGTCAGCAGCTCTGGCACCCGCCACCGTCTTCCACGAGAGATGATCTTCGTGGGCCGGGAGGACTGTGAGCTGATGCTGCAATCTCGAAGTGTGGACAAGCAGCATGCCGTCATCAACTACAACCCTGCTACCGATGAGCACCTGGTCAAAGACCTGGGCAGCCTCAATGGAACCTTTGTGAATGACCTGAGGATCCCAGACCAGATTTATATTACCCTCAAGCTGTCTGATGTCATTCGCTTCGGATATGATTCCCATGTGTACGTCCTGGAGAAGAGCCAACACAAAGTCCCAGAGGAGGCACTCAAGCATGAGAAGTACACCAGCCAGCTGCAGATGGGTCTGAGAGCCTCAGAGGGGAAGAGGGCTGAGCACCTGGATGACAGGTCCAAGCTAGAGAAGACGGACAGGAAATCTCTGTCTCAAGAGACTCCAACCTCCCGGCCCACTCCATTGTATGGCCAGCCCTCATGGTGGGGGGAGGAGGATGCGGCCAGCAAAAGACAACACAGTGAGGGACATCGGTCAGAGGAGGGTCACCCAGAGATTCCTAAAGAAGGTTCAGCGTTAGATTCAGAGGTGAATGGCTCCCTGTTCGAGTACAGGGACGCCCAGGGCAAGTCCAGCTTCTCCTACCATCGGGAGCCCAGCTACTTTGAGATCCCTACCAAGGAGTTTCAGCTGCATCCCAAGTCCCCGGGGGCAGAGCTCCACGAGATCCCCACCAAGGACACGGACACGCCCCATGCCCCTTCCACCCCCACCTCGCCCACTCCCCCCGTGGTGCAGAGCCACGCCTCCTTCACCATAGAGTTTGACGATTGCACCCCAGGCAAGATCAAGATCAAGGACCATGTCACCAAGTTCTCCTCGCGCCAGAAGAAACAGCAGCAGGTGTCCGGCAAAACTCTGGCCACCACGCCCACTGAGGTGATGTCAGCCGAGTGCAAGGTAGCAGATTGGTTGGTGCACAGTGATGTGAGAATGATGAGAAGGCGTCCCACGTGTGAGGATGTTTACAGTGTCAAGAGTGACCAGGCCGTAAACATCAAGAGCCTCAAAGGACACCAGCATGACGATGGGACCCAGAGTGATTCTGAGGACCCGGTTTTAGGGAAAGGGAAGCAAAGCAAGTCACACCACCGGATCCAGTCGCAACATTCGATCCAGTCTGAGCTTTCCCAGTCAGAGCTGTCAGAACCGTCACAACAGACTGTGCGGTCATACCAATTAGTTCCGTCACAGCAGACAGTCCAGTCGCACCATTCAATTCAGTCTGACCAGTCAGTGCCGTCACAACAGACAGTGCTGTCAGTCCAACCACACCAGACAGTCCCGTCAGTTCCATCACAAATGTTACTccagcctcagttttctcctcccAAACAGACCCCAGTCTCTCCTGTGGTCCCTGAGAGGCCCCTGTCTGAAAGCCCGCCTGAGGTTCGCTCCCCCACCATGGGCCCCTCTAAGCCCGACCCCCAGGAGCCACTCAGCCAGCAAGCATTCATCATCGAGTTCTTCGATAACCCGCGCAAAAAACGCTCCCAGTCCTTCACGGCCAACCCCGCCCACGCAGACTCTTACTCCACCCTCAAGGCCAAGCTGGAGCGGCGGAAGGGCGGGGAGAGGCCAAACTCCATGCACGGACACATCCCCCCCACCCAGCAGGTGACTGTTCCTCTGAAGGGCCAGGGCCATGGCGGGCCTCTGAGGTCGAGCTCCCTGaagagggagaagacagaggagccCCTGAGTGGAGGTAGTGCCTCGTCTTCCTCCGGTTCTGGGCCTTCTTCTCGTGCTTCTTCTGGCATCACCATCAAGCTGTTTGGCAGTGTGGGGAAGAAGTCCAAGCTGGCCCAGGAGTTTGCAGCAGAGTTCCTGATGAAGGATGCAGCCCACGGAGCATTGTCCCCCACCAGAGATAAGACGTCTCCTCCCATGTCCGCTCCCCCGGTGATGATGTCACCCTCTCGCACCCGCATTCCGTCTCCCTTAGACCCCCCTTCCTCTGTTTCCTATCCCTCCACCCCCTTGCAAACTACAGCACCACGTTCCTACTCTCCAACTCCTGCCCCTCATTCCCCAGCTCTAGCCCTCTCTCAGCCCCCGTCCCGCAGCCCTGTCCAGACTGCCTCTCCAGTTCGCTCAGCCGTCCCCTCCACGACCCCTCTAATGCCGCTGGGTCTGGGGGTGTGTGGGGTGGACCCAAAAGCCTCCAGGGTGGTGAGGAACGAAGAAGAGGACAGTCTGAGTGATGCCGGCACGTACACCATCGAAACAGAGTCCCAGGACAAAGAGGTAGAGGAGGCACGCAACATGATCGACCAGGTGTTTGGTGTCCTCGACTCACCGGAGTACAGTGGTGCCGGAGTGTATAGACCCATCATTAATGATGGCAAGGACGAGCCGGCAATGCTCCGGCCTAGTGACGCTAGCACTGTGGATCAAATGAAAGCAGTGTCTATGCATGGCTTTAACCCAGCCGCTCTCAGTGGGGCCCCCTCAGGCCCCTTCCAGTTTCCTACACGGTTTCAGGTGCCGTCTTCTAACACTGCAGCGCAGGAGGAGGGGCCTAAGTGGGTTTCTCGCTGGGCCAGTCTGGCAGACAGCTGTGCAGAACCAGGCTGTACTCCACCTCAAGGGgaatttgcagagggagATTTACGATTGAGTCGGTTGATGCCTAGCCACAGCGTGGATAACTCTGAGTCAGAGGGGAGCCAGAGTTGTAGGATCAGGAGGCTGCTTCCCCAGGTTCCCCCTGGAGACGGAGACAAGCCAGAAAGCCCCACCCCCAGCATCCTGATCCGCCACGAACCCCCCTACCCAGGCCCCGAAACCCCCCTGGAGAGGAGTAGTGGTACGCCTCGGCATCAGGACTCCACCCAGAGGCTGTGCATCCAGGATGATGTAGACCCAGACAGCTTGAGTGATGCCAGCCGCTCTGACGATGGCTCTGTACTGGAGAGGACCAGGAAGAGCCAGGGGAGGGCGAGTGGCGCTACCTCGCCCGGGGACGCTGGACCTCACTATAGGGGTCAAGATAAGCTATCTCCGACTCAACCTACCAAGTCCACCTCTTTTTACATTGGTTCTGAGGAATGCAGCTTAGGCAAGCCGGACCTGGCCCGAAGCCCTTTTCTGTCTCAGGGGCCTGATAGGGGGCGAGATGCCCCTGCCAAAACCTTCCCCACCACCGTCCTTATCAGGCACCTGAGCAGCCACGAGCCCCGGAGGTTGGGCATCAAGCCAAACAACTCAGCCCCCAACCTCCACTCCCAGCAGGACAAGGAGTCTAAAGACCCCAGTAAAGACTCTCTAGGGACTTCCTCGTTCGTCAGGCAGGAGAGCTTCACTAAGGAGCAACCCAGTGACGACATGCAGATTAAGAGGCTCCCCCACATCTCCAGTCACCCCACCCTGAGGGAcatggagcagaggagagagactgcAAAGGACCCACAGCCCTTCCTCCGGGAAGCAGCAgacgcctctctctcctccctggagGTCAAGTTACCCTCCTCAGGCTCCGGACACAGTTCTAAGAGAGGAGGTTCCTCCAGTCACATGGACGACTCTCTGTCTGGGGAATCCGATGTGGATACAGCCAGCACCGTCAGCCTGGTCAGCAACAAGAACACCCACGTCACCACAGGCCCCAAGAAGAGGACGGCCGCCAGGTCCTCCTCCAGTCCGTCTGTCCAGGAGAAGGGCCACCGCCAGCCCACGGCCCGCGAGCGCCTGTCAGAGAAACGCCGCAGCCATGCAGCTGCCGGTGATAACTCCAGCAGCAAGGCCGAGCAGGCCAAGCGCTTCCAGATGCGGCGCAGCACGGGGAACTGCGGATCCCTGGACCTATCAGAGGACCAGCAGAGTTCTGGCCAGCACTGGCCTGACACTGCCTCTGACCATGAGACCGGCTCCCGGCCCGCCAGCCGCAACAAGAAGCTCATAGCTCCCCTACAGAAAGAGGACAATGGGAAGACCCCCAAGAGTGCAGCACAGCAGGCACTGATCCGCTCCAACAGCCTGTCGGCACCACGGCCCACCAGAGCATCCATGCTGCGCAGGGCACGCCTGGGAGAGACCTCTGACAATGATGGTACTGAGACTGACCGGGGATCCCAGAACTCAGACCACATCGTTGCTCCCTCCAAGGTGTCTGCTGACGGGAAGAAGCTCCTCTCCAGACTGGACATCTTGGCCATGCCCAGGAAGCGAGCAGGCTCCTTCACTATGCCTAGTGACAACGagtcctccatcaccaccccttCAACCCGGCCTGGCTTCTCCAACCGGAGTGCAGAATCAACTGGGCCGGTCAGGAAGACATCAGTGGGTGAAGCAGGGGCAAAGCAGGGGGTCACAAGAGGGTCTGGAGCCCCTGGGAAGCAGCCCCTCACCCGCACACGCTCCAGCGGAACTAAATACTCCAGCACAACCAGTTCCCGTCAAAGGCAGAAGGGTTCAGATTCCACCTCCACATCTGAAGAGGAATATGAGGCCAGCTCTGGAACCCCCAAACACAAACGCTCCTCCCACATGTCTGCTGCCACACAGACCCCACGGGCCCAGAAGGAGAAAGCTGTTGCAGAAGTTGCCCGGTCCAAGTCCGGCTCACTGGAGTTGGAGGAGGACGAGGTCCAGAATGAGGATGACCACTACCAGAACTGGACCACACACAGCGCCGAGATAGCAAAGCTCAGTCAGGACTTGGCCAAGGACCTTGCCATCCTGGCCCGTGAGATCCATGACGTGGCGGGGGACGGGGACTCTCAGAGTTCCTCTGGAATGGGCACCAACCCCTCCCCCAGCTCTGCACCCAACACGCCCGGGCCCGCATCCACCATCCCCATTTCTAGCCGGGAAGAGAGGCCATGTACATCTTTGCGAGGGGTCCTCCCATCTCAGCTGGTCCAACATATTCCTGAGGCCAGCTTAAACTACCAGAAGGTTCTACTATCGCCAGGTTCTACCGCTGTCATGGACCTGGATCCTAACATGAATGACCAAGACCCAAGCTCTAAGCCCCGGTGGAACCGTGAAGAGGTGATTTTAGACAATCTGATGTTGAACCCTGTTTCTCAGCTCTCTCAGGCCATTCGGGAGAACACAGAACAGCTGGCTGAGAAAATGAAGGTTTTATTCCACAACAAGACTGAGGCCTGGGAGGAGATCGAAGCGAAGATCAATGCTGAAAATGAAGTCCCCATCCTCAAAACATCAAATAAGGAAATCTCTTCCATCCTGAACGAGCTGAGAAGAGTACAGAAACAACTAGAAATGATCAACAGCATTGTGGAACCCGGTGGAGCTGGCAGTGGGAACCCTAAGGTGGCAGCAGTGGCTACTGCTGCTGCAGGAGGACAGGCCAACAGGTCCCCCTCGCGGCAGAAGAAATCCCCCAGTAAGCCCACTGGGCCTGGGGACAGACAGCGTGGTGCTGGCCCTTCAACCAGCCCCACCACCTCCAAACCCAACGCCAACGAAAGCACCAAGAGGACCACTCGAGGCCCCAAAGGGGCAAACTTTATGGCCTGATCAGAGTTCCCAGGTTTCTGTAGCATCTGCTGGTGGCGACTGCCTCCCTTCACCACACGGTCATTTGTAATGTAAAACTATcatgatatacagtatactgtatctgTTTTGAATGGTAAAGGTGTACTGTAATTGAGCACCAGTTTAACTGAGTACCACTGTTTAGAATGGCTTCTTCCACATTTGTACAAGCTCAACTAAAAGTAGGCAAAGCTGAGTAAAATAAGTTGTAACTTGTTGCTTTAATAAGTGGATTGTGTACAAAATAATGTCCATATGCCTTGTCTACTTGTCCTGTACAATGTGTAGTAGCTCAGTACTGTAGGCTTGGCCAGATGCCCAAGATAAGACAGGCTACATTCTTGCACCAACTTTGTTACCATAGTAATAATCCTGATGAAAACAGTCCTAGGTGTCCATGAGAACATGTGATGGACTACTTCAATGACATGGCAAAACAGAGCAGCATTAGAGAGGTTGGTTGCAGTGTTCTGTGCTTGTCTTGTAAAATATGattcattgaatgttcctgaatgaCTTGGATATTTTACTGCTTGGAAAAAAAGCTACTGAATGAACTGACGGACCACCAGTCTCCCTTTTCTCAACTTGATTGTCTGATATTGTGAATATGCTTAAGATTTGTTCTATATGAATGCTGTGCGTACAGAATGTTAGGATGGTGTGTCATACAATGTTCCAGATCCCAAATAAATGCAGTATACACTATACAGCAtcagaaagaggggaaagagcatacttagaaggccagcatcccagagtcgcctcttcactgttgacgttgagactggtgttttgcgaatactatttaatgaagctgccagttgaggaattgtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU784952 lncRNA upstream 111896 25541173 ~ 25541404 (+) True G689397
TU784951 lncRNA upstream 112225 25540799 ~ 25541075 (+) True G689396
TU784950 lncRNA upstream 113654 25539344 ~ 25539646 (+) True G689395
TU784948 lncRNA upstream 118138 25534879 ~ 25535162 (+) True G689393
TU784918 lncRNA upstream 154962 25497597 ~ 25498338 (+) True G689374
TU784983 lncRNA downstream 8438 25684525 ~ 25685894 (+) True LOC110529690
TU785049 lncRNA downstream 37325 25713412 ~ 25713643 (+) True G689490
TU785052 lncRNA downstream 39545 25715632 ~ 25715857 (+) True G689493
TU785036 lncRNA downstream 56692 25732779 ~ 25733786 (+) True LOC110529691
TU785062 lncRNA downstream 60151 25736238 ~ 25736471 (+) True G689502
XM_021612124.2 mRNA upstream 1313 25607940 ~ 25651987 (+) False LOC110529687
XM_021612125.2 mRNA upstream 1313 25607940 ~ 25651987 (+) False LOC110529687
XM_036985170.1 mRNA upstream 1313 25624050 ~ 25651987 (+) True LOC110529687
XM_036985169.1 mRNA upstream 52758 25587443 ~ 25600542 (+) False LOC110529686
XM_021612123.2 mRNA upstream 52758 25587444 ~ 25600542 (+) True LOC110529686
XM_021612132.2 mRNA downstream 2517 25678604 ~ 25685877 (+) False LOC110529690
XM_021612133.2 mRNA downstream 2518 25678605 ~ 25685877 (+) False LOC110529690
XM_036985173.1 mRNA downstream 17456 25693543 ~ 25733800 (+) False LOC110529691
XM_036985172.1 mRNA downstream 21119 25697206 ~ 25733800 (+) False LOC110529691
XM_021612141.2 mRNA downstream 129814 25805901 ~ 25809907 (+) True LOC110529695
TU784318 other upstream 591850 25058953 ~ 25061450 (+) True G688823
TU784088 other upstream 668474 24982729 ~ 24984826 (+) True G688613
TU782829 other upstream 1662301 23984445 ~ 23990999 (+) False LOC110529210
TU782837 other upstream 1662301 23984445 ~ 23990999 (+) False LOC110529210
TU781994 other upstream 2129265 23484432 ~ 23524035 (+) True LOC110529640
TU784988 other downstream 2565 25678652 ~ 25681727 (+) False LOC110529690
TU785811 other downstream 457104 26133191 ~ 26195544 (+) True LOC110529702
TU786082 other downstream 705041 26381128 ~ 26383426 (+) True LOC110529706
TU787679 other downstream 1880197 27556284 ~ 27557019 (+) True jag2b
TU788176 other downstream 2219614 27895701 ~ 27895987 (+) True G692343

Expression Profile