RNA id: XM_021612133.2


Basic Information

Item Value
RNA id XM_021612133.2
length 3999
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC110529690
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 25678604 ~ 25685894 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAATGTTGGTAGCCAACCACAACAACACCACAGAAGAAAAAGTGTTTATTCTGGGCTTTCGCAGATTTGTTAGGCTAGCTTTGTAAAAATGGTTACTCCCTTATTTAGGCGTGTTCCCGTCATTTTTGGTTAAAAGTAACAGGCTTTGGGGGGCTTTAATGTCAGGTGCAGCTAATTTAAAGACCTTTAGTAAAGCGGGAACCAGCTGGCACTTTAGCCGGACGATGGACGAGCTGGTCCATGACCTGGTGTCGGCGCTGGAGGAGAGCTCGGAGCAGGCGGCGCGGGGGGGTTTTGGGGATGGGGGGGACCACGCGCTGGCTGTGGGCTGCCTGCTGAAGAGACAGGCCCGGAAACGCCGTGGGAGGAAGAGACGCTCTGACAATCCCCACCCGCCCTGGGAGACTGGCCACCTCAGTGAGGGCTCCGAGTCCAGCCTGGACGAACACAAGGACTACCGTGCCACCACAGGCAGCGTTGCCAGCAGTAACAGCCACCCCCGTGACAACAGCGACTCTGACGAGCAGCTAGGGCCCAAGCGACGTACCCCTCTGAACCCTGACACAGGACGTGGCAAGCGCCCCCTCTGGCAGGAGGACCTTGGAGGAGTGGGGAGCGCGGAGGGGTGCCGCAGTTTGAGACGCCGCCGCAAGGTCAAACGCATGGCCGTCGATCCCCCTCTGGAGGCAGTGACCTCCAATAGCACCACCCCCATGCTAGGTCCCCCGCCTGTCCCCAAGCCCCACGGAGGGTGCAGGATCCCTGGGGTGAGTGCAGCTGAGGGCAGGGCAGGGATGGAGCTCACTGGTGGCGAAGTTGGCGGGAAGTGCAGGGTGAAGAAGAGGAAACTGGCAGCCCACAGGCTCGGGTTGGAGGCGACTGATGAGGGCGTATTGGTGGAGCGTGGGGACGCCATTATGCGGCAGGCGGGGCCCAAGGACAAGATGGAGTTTGAGGAGCAGAAGGGCTCGGACGAGGACATGAGTGACAGTGAGACCAGCAGTGTGAGCAACAGTAGTGATGGTGGACTGTACACCAATGATGAGGGGAGGCAAGGTGATGATGAGCAGAGTGACTGGTTCTATGAGGGGGAGCCAGGGGGGGCGTGTGGTGTTGCGGGGGTGATTCcctggtgggagagggaggcaggggaggaacTGGACCTGGCTGACCCGGTCTTCAACAGCATCCTCACCGGATCCTTCCCCATCATGAGCCCCGGAGCACAGAGAGGGTTCCAGGCCaggctgagccggcttcatggggGGCCCCAGGGCCAGGCTTCTCAAGGCAGCCCAGGACAAACCTTCAACGAGCGACTGGGACGACACCACCAGGACCCCCACTCACACGACCCATGGTTTAGTCCGGGATCTAGAAGAGAACATGGACAGATGCACTGGGACTCACGGTCAGACAGAGGCCATCGGAGGAGCTGCTCAGTAAAGACGGCCAGCAGGCAGACGAGTGGTCACCTGGGGTCTCTGTGTACGGGGGATGTCAAGAGGAGACGCAAAGCAGCACCCCTTGGCTTACCTCCGCCCACAGGGTTGGTAGGTGAGAGTGCGGGGCCCATCCCAGAGACCAACATGGGAAACCGGATGCTGCAGAGTATGGGCTGGAGCCCCGGCATGGGCCTGGGTCCGGAGGGCAGGGGCATCACCGAGCCCGTTCGGGCCACACAGAGACCCAAGGGAGCGGGTCTGGGTTTTAACTGAGCCTCAGGCTTTAGGCCCCAACTGAACAGGCCAGTAGGCCTCGATGGAGATGGACCCTACCGAGAGCAGGGAGGACTGTGGTCAACTCTCTCTGGGAAAGAAACTCTGGAGCAGCAGAGCTGGATGAAGGAACGGATGAAAGTCGGCAAGAACAGTTTTAACTAATAGGAAGACCGAAAGGATAATTTGAGGTGGGAACCCCAACGCTCCATGCACTTCCACTCTTAACCAGGGCCGGAACTCATAAGGGAAGTTTTGACCCCGGTTAGGGGAAGTGCATGGAGCGTTTGGATTCCCACCTCAGATTTGTAGTTGGGATGTCCAATGTTTCTACCAGGGAAAAGGGAAGGAATGGAAAAAAAGACCCAGGCGTTGTTGTTGAGTTTGATTGTATGAGACTAGCCAGGTTGTGTAGTTGGACTGTGTACTGCACAGCACACTAAAAGGCTCAGTTTCACAATAATATAATTTCTCTTCAATCAATGGTTGTTCTGATATTGCACAGtatgacaaaaaatatattttaggtgAATATCACTGTACGCATCAAAATAATGTGTGTGGTGGAAGTttctatttgattttaaatatgttttgcGACACAACATTGGTGTTATTCCAGGGTAATTATAATGGAATAGCATTATTCCCGTGGCTTAGTACAAAAAGGTGATGGCTGAAGTGTTAGCAAAGTACTGCATTTAGGTTAAGGTAATTACAATTATACTACTTGTAGTTTCTCTGGTATAACgctaatgtaatgtaactggcaaatgttttttaaattggtCTATATGGTTCCTTTTGGGATATTGGGCAGTTATATTTGATTGTAGATGACGgttattggtaaaaaaaaatatatatatatatatatatatatatatatatattttaagatgccaattctctcctctgctcctgactgcatgtgctcCCATAGAAACAGAATGAATCGGACGGGCATCCTCATTCAAGTCAATGGTGGCATAATGGGTTGACTGGCTAGCATTGCAAGTGTACCCATAGGAGCAACGTAGGAAGTGTACCCATAGGAGCAACGTAGGAAGTGTACCCATAGGAGCAACGTaggaagtgtacccatcaatTTGTGGTGCGATTTGTTTTGATTCAACTCAACCGATTACAAAGAAATACATTCCATTAGCCACATCAGTTAACATAAATTCATTAAATGTTCTACATCACCATTGAAATGATTgaatacaataccagtcaaattgccagggttagaggttcccaAACTCggctcaacccccccccccccccaaacccccgGGTGCACATTTAGGTTTTGCCCATTTaggttttgccctagcactacacagctgtttCAAACAAACAACTCATCATtatgcttttttttattttcttttacgGTTATGACATTTATTTTGTTTTCATGATGGTGTTCATCCATAACCGGCGGTTATATGGTAATTGTGCCGGCGTAAAGATGGTATTCCTGAGGGACGTGGGAATAATTCAGGAAATGAATCTTGAAATAAAATCATTGTATGTATGGTATTGAAGTAGAATGTTCAACCCTGAACACTCCAGAATAGTGTTTATTTGATTAAAAAGGCAGTGCAGTTAACTTGATTTCCTGTTTTTTGTTTTATGACATTGAATTAACACTtggaaattgtgaaaatgatcatATTGCCCGttttgtgtaagagctgtttgaaaaataATTCCaggaatttcagcctgttcaaGTGGTGTGGAGTTATTGGACAAGATCATGACATTACAATCTGATCTGATTAttctgaccaatgaccagtcatctTTTATTTGCGTGCCTATCCTACTTTGAAGGGATTAACGGAGTAGGCTCTGGCCAAGACGATCCTATCCGCCAATCAGGGCTGTTGGGcgatcagactgagcatttcaatgGCAAAAGGAGGCGTAGTTATTTTGCattaaataaatacacagtgtTTTATTAGACATACAGTGATAATTTAAACGTAACATTAAAAAGACTGCATGGGGGCTTTAAAAAGAAGCCAAGCAAAATTCTGTTTCCCAGTCATGCTGTACTTGCTATGTATGTGTAGCAACCATCTCATGGCAATGTCTTTACAATAACAGTCTACTAACATGTTTTATAAAGTGAAAAAAATGATATTGGTTACACTTTACAGTCTTCTATTTACCTGGTAAATAACAACTGAAATAggtttgtaaaaaaaaagtgttaccGTTGCCAATGTAATGTTCATTAAACTTGAGGGCCTGAGTGAAACGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU784952 lncRNA upstream 137201 25541173 ~ 25541404 (+) True G689397
TU784951 lncRNA upstream 137530 25540799 ~ 25541075 (+) True G689396
TU784950 lncRNA upstream 138959 25539344 ~ 25539646 (+) True G689395
TU784948 lncRNA upstream 143443 25534879 ~ 25535162 (+) True G689393
TU784918 lncRNA upstream 180267 25497597 ~ 25498338 (+) True G689374
TU785049 lncRNA downstream 27535 25713412 ~ 25713643 (+) True G689490
TU785052 lncRNA downstream 29755 25715632 ~ 25715857 (+) True G689493
TU785036 lncRNA downstream 46902 25732779 ~ 25733786 (+) True LOC110529691
TU785062 lncRNA downstream 50361 25736238 ~ 25736471 (+) True G689502
TU785067 lncRNA downstream 57802 25743679 ~ 25743936 (+) True G689507
XM_021612127.2 mRNA upstream 2518 25653300 ~ 25676087 (+) False LOC110529689
XM_036985173.1 mRNA downstream 7666 25693543 ~ 25733800 (+) False LOC110529691
XM_036985172.1 mRNA downstream 11329 25697206 ~ 25733800 (+) False LOC110529691
XM_021612141.2 mRNA downstream 120024 25805901 ~ 25809907 (+) True LOC110529695
XM_021612144.2 mRNA downstream 317718 26003595 ~ 26006629 (+) True LOC110529698
XM_021612145.2 mRNA downstream 391620 26077497 ~ 26080970 (+) True LOC110529699
TU784318 other upstream 617155 25058953 ~ 25061450 (+) True G688823
TU784088 other upstream 693779 24982729 ~ 24984826 (+) True G688613
TU782829 other upstream 1687606 23984445 ~ 23990999 (+) False LOC110529210
TU782837 other upstream 1687606 23984445 ~ 23990999 (+) False LOC110529210
TU781994 other upstream 2154570 23484432 ~ 23524035 (+) True LOC110529640
TU785811 other downstream 447314 26133191 ~ 26195544 (+) True LOC110529702
TU786082 other downstream 695251 26381128 ~ 26383426 (+) True LOC110529706
TU787679 other downstream 1870407 27556284 ~ 27557019 (+) True jag2b
TU788176 other downstream 2209824 27895701 ~ 27895987 (+) True G692343
TU788158 other downstream 2284599 27970476 ~ 27972016 (+) True xrcc3

Expression Profile