RNA id: XM_036985172.1


Basic Information

Item Value
RNA id XM_036985172.1
length 3653
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC110529691
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 25693543 ~ 25733800 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTAAGACCTCACTGGCTGGAGTGTCAACACTGCTGCTAGAGGGAAGTCAGTGAGCGcatgagaaatagagacagagacacacagaaacagagagggagcgagagagagactgttgctCCAGTGAAAGTGTGTGTATAAGAGAAAAACAGAGCTtggtagagacacagagaaagagagttatAGGGAGACAGACCAactaaagaaagaaagaggaagcTGACAGGGATCGTTGCTCCTCAGAGTATGGTGTCAAAGAGCACATGGATTTAGTAGAGCTGTACCTCCCTGAGTGTTTCACCTATCACCCTGACACTGATATCCTGGGCAGGATGTCTGTGAGGGGCTTGGACACCTCCTGTCCCCCCATAAAGCGCGAGccctccagccccagccccagcttccAGGGGGACAGCCCATCCCAACCCAGCCCTGAGGGCTCCTCCTCAGACACCAACTCCAGCTTTGGTCTCCTGGGCAAGAGTCACAACCACACCAACGGCTTGGACTCACCAGGGCTCTACGGACACACAGCGGGCATGGGGAACAATGGAACAGCCaacagGCGGTTTGGTGGTGAGGATGGCCAGGTGAAGTGTGAGTTCTTGCTGGATTCTGTGGCTAAGAGGCTGTGTCTGGTGTGTGGAGATGTGGGGTCAGGGTACCACTACGGAGTGGCCTCCTGTGAGGCCTGCAAGGCTTTCTTCAAGAGGACCATCCAGGGTAACATCGAGTACAGCTGCCCGGCCACCAGTGAGTGTGAGATCACCAAGCGGAGGAGGAAGTCGTGCCAGGCCTGTCGCTTCATGAAGTGTCTCAACGTTGGAATGATGCGAGAAGgTGTGCGTCTGGACCGGGTTCGTGGGGGCAGACAGAAGTACAAGAGAAGGATAGACTCTGAGAACAGCCCCTACCTCAACCCTCAACACGGCCTGCCACAGAAGAGAACATttccTCTAGGTGGTCTGGTAGAGAATAAGGTGGTCTCTCTCCTGCTGGTGGCTGAACCAGAGAGTATCTTTGCCATGCCGGACCCCACCGTCCCCGACAGTGACATCAAAGCCCTGACCACACTTTGTGACCTTGCCGACCGTGAACTGGTGGTCAACATCGGCTGGGCCAAACACATCCCAGGTTTCCCCTTGCTCTCGCTGGCAGACCAGATGAGTCTACTGCAGAGTGGATGGATGGAGATTCTGATCCTGCGTGTGGTGTTTCGCTCGCTGGCCCTAGAGGATAAGCTGGTGTATGCTGAGGACTACATCATGGATGAGGAGCAGTCCAAACTGGCAGGTGTACTGGACCTAAACAACACCATACTGCAGCTGGTGAAGAAATACAAAGCCATGAGGATCGACAAGGAGGAGTTTGTTGTCCTCAAGGCAATCTCACTGGCTAACTCGGaCTCCATGCAGATAGAGGATGTGGATGCAGTCCAGAGTCTCCAGGATGTGCTCCATGGGGCCCTGCAGGACTACGAGAGTGCCCAGCACACGGAGGACCCTCGGCGGGCAGGCAAGCTCATCATGACCCTTCCCCTGCTCCGGCAGACGGCCGCCAGGGCTGTGCAGCACTTCTGCAGCATCAAGCAGGACGGCCGTGTGCCCATGCACAAACTGTTCCTGGAACTGCTGGAGGCCAGGGCCTGACCAGCCACGTGGGACTAGGATCACATAGAGGAAGGATAGGGCAGTGATGTCATAAAGGTCAAGATTAATGCAGGAAGTGGTATTGTGCTGGAAGAACAGAGTGAACCTGAGCAATGAGTGGACCTGAACGGAGACAAAATGGCTCCTCTGTGAAGTTCCAGATGCTCTTCTATTAATAAGTAATTGTTGTCCAATCCTTCTTTATGCCATTCTGGGACTGTTGTGAGTTTGACAAGGCTAACACAGCCCTGCTCGCCATTACAAactcaggaggagaggaggaaggactgACTTCACCTTAGTGACAGGGATAACTGCCTTATGAGGGATTTTGATGGCAGTTCTTAATATAAACCTAAACCGTGCTAGTGAAATGAAGAAAGACACCCAAAACTTGAAGATCCTCTAGGATTATTATTTGTGTGAAACCAGCTCTAAGCCTGTTCATCTTGCATTGTAGTGCTTGGAATAACTTTTCTTTTTTATATCAAATGAACTGTGGACAGGCTTGCCAAAGAACGGTGTGACACACTTAGTCAAAGGATGCAGCAAGCGGTCACAATAACGTATGTAAGGCACTCACCTATAATAAGTTAGGGAACTTGATTTAATTAAGTCActgtaacactttttttttttacctttatttaattaggcaagtcagttaagaacaattttttttttgatgacagcctaggaacagtggtttaactgccttgttcaggggaagaattacagatttttacgttgtcagctcggggatttgatcttgcaaccttttgattacttgtccaacaccctaaccactagtccacctgccgccccaatgattATGAAGGTGAGGGGAGATTTTGAAAAAAGGCCTATATTCAATCAGCTCAAGAGTTAACGGCGAAAGCAGACACCCGCATAGCGGATGTTTTGGTGGAGTCGGAGGTGGAactgtcaaatcggtgagcagctgctcttccgatcattgtcacgaagccacacccaCTGGCGTTAGAAGTTCAGAAAGAAAACGTGTCGAaagctatatagaaataatgatgCTCGAATGTAAAAATCATTAAACTAAATAATGAGGgtttctatcatcctaatggaggtatagattacatctcacattccagtgttgaACTTGTAAAGAAGGCTGCATGGGTTTTTAGATAATGTGACTCGGTGCAGCCAATGGCAGTGTCCGATTTAGGTATAATGCCCggagccacttgtggatttgacagctcttaGCGCAGTTCCATCTCCAACACCATCAAAACAGCCGCTACGCAGATGTCAGCTAAAGcagatctgattgaatagagccctaaaaatgtatttattgttggcttgattattttgtttttttcGTTTTTTTATTTACCAGTGTGGCATTAATGAAGAATATTAAAGGAATAAATACAGATCATTTTCTAAAGATGAGGTCATTTTGTTTTAATAAGTAAATAAAACGTTTTGTACTAGCTTCACTACTTCACTCATGGCACTGATACCTGTACTATACCATAGCATCTAAGGCGATATAATAACGTGATGTACAGTACTTGATGACATTGAACCATGCATTGAGTTGTAGATTACACACTGTGCAAAGCACCTTTCTTTCTTATGATGTTCATCTGGTGGTGGTATTTCAAACGTGTTTCCGTTTTCAGAAAGTAGAAATCTTGGAAAATCACAAATGGTCAAATTAATGGAAACTAAATCGGTAGGAATGTGAAAACAGCGTTTAAACTCCCCGTACATTACGGACAACTGTATTTTTATTTGCTCCAACTGTGCGGAATAATCTGTATATTTTTGTGACAAAGTATATCATAAAGTGTGATCCAGCAATACTGTGTGAAGGGGGTGTAAATGTATGTATTCTGTATATAAAGTTCAGCGCCAACTGAGTTGTAACCCATGTTCAGATGAGAtgtacactactactactattctcAGGACGATTCTAGGGCAATAAAGATGCTTCCAGTTCCAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU784983 lncRNA upstream 11312 25684525 ~ 25685894 (+) True LOC110529690
TU784952 lncRNA upstream 155802 25541173 ~ 25541404 (+) True G689397
TU784951 lncRNA upstream 156131 25540799 ~ 25541075 (+) True G689396
TU784950 lncRNA upstream 157560 25539344 ~ 25539646 (+) True G689395
TU784948 lncRNA upstream 162044 25534879 ~ 25535162 (+) True G689393
TU785062 lncRNA downstream 2438 25736238 ~ 25736471 (+) True G689502
TU785067 lncRNA downstream 9879 25743679 ~ 25743936 (+) True G689507
TU785066 lncRNA downstream 10328 25744128 ~ 25746736 (+) True G689506
TU785008 lncRNA downstream 25107 25758907 ~ 25762187 (+) True G689449
TU785077 lncRNA downstream 47059 25780859 ~ 25781090 (+) True G689517
XM_021612132.2 mRNA upstream 11329 25678604 ~ 25685877 (+) False LOC110529690
XM_021612133.2 mRNA upstream 11329 25678605 ~ 25685877 (+) False LOC110529690
XM_021612129.2 mRNA upstream 21119 25653300 ~ 25676087 (+) False LOC110529689
XM_021612141.2 mRNA downstream 72101 25805901 ~ 25809907 (+) True LOC110529695
XM_021612144.2 mRNA downstream 269795 26003595 ~ 26006629 (+) True LOC110529698
XM_021612145.2 mRNA downstream 343697 26077497 ~ 26080970 (+) True LOC110529699
XM_021612148.2 mRNA downstream 381206 26115006 ~ 26118968 (+) True ngs
XM_036985178.1 mRNA downstream 399397 26133197 ~ 26172347 (+) False LOC110529702
TU784988 other upstream 15479 25678652 ~ 25681727 (+) False LOC110529690
TU784318 other upstream 635756 25058953 ~ 25061450 (+) True G688823
TU784088 other upstream 712380 24982729 ~ 24984826 (+) True G688613
TU782829 other upstream 1706207 23984445 ~ 23990999 (+) False LOC110529210
TU785811 other downstream 399391 26133191 ~ 26195544 (+) True LOC110529702
TU786082 other downstream 647328 26381128 ~ 26383426 (+) True LOC110529706
TU787679 other downstream 1822484 27556284 ~ 27557019 (+) True jag2b
TU788176 other downstream 2161901 27895701 ~ 27895987 (+) True G692343
TU788158 other downstream 2236676 27970476 ~ 27972016 (+) True xrcc3

Expression Profile