RNA id: LOC110529218


Basic Information

Item Value
RNA id LOC110529218
length 904
RNA type mRNA
GC content 0.53
exon number 6
gene id LOC110529218
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 25796900 ~ 25800394 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTGTGCGACGGACAAACTTGCAATGGTCGTGGTAGTTGGCCTTGCGGGGGATATTGTACTCTACACGCTGTGCAAGCTCCCTGCGGCATCTGTTGCTTGCGCTAAGGTACCATACATAGTCCTGCTGATGATAGCCGTGCACGTGCTGTGCTATCTGGGGCTGAACTACCAGACCCTGGTTCCTTTCACTGACCCTGGTCCATCTCCTGCTGCTCACAGCCCTGtcctgtgggaaccacacactgGTGCTGGGGGTCATCATCGCACAGAGGCACCAGGACAGCCTGCAGGGAACCGTGCTGCTCAGACAGCTCCTGGTTAACTGGGTGTTGTACCTGTGTGCAGTCACCCAACACCACCAGTTGTGTATCAAGATCCTGGGAGACTGTTACTACTGTATCTGTGGCCTGCCTGGTTACCGTGACGACCACGCCGTTTGCGCCATCATAATGGGCCTGGCCATGGTGGAGGCCGTCTCaggaggagaaggggaaagagTGGATAGAATAGGGAGTTGCTCCGAGAACCCCAAACACCACAGCTACATGGCGGTGCTGTCACTCGTGGCGACCACCATATACTGGTGCGGGGTCAGCCAGCTGGTCAAGCTGGGGCTCATGCTGCTGGTCGTTGTGACAACGGGTGTCGTCAACATCTACAGCTGGAGGGACATCTACGAACTATATGACTTCATACGATTTACCAGCTACAGgacaTCTGTAGTCCCTTCCAAGTACCTGATGACAGTGATAGTCATTATCATGAGGATAAGCTTCTACTACTTTCCCAGACATGTGGAGAGGCAGTCAAATAAGCTGTTCCTGTGAAAGATTGAGGTGCATGACTAGAAGGTTAGGGTGTTTGAGATAAAGCACTGGTCACCAACATGCTGcctgaactag

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0009190 cyclic nucleotide biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0016849 phosphorus-oxygen lyase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU785489 lncRNA downstream 17538 25779126 ~ 25779362 (-) True G689883
TU785480 lncRNA downstream 59199 25737493 ~ 25737701 (-) True G689874
TU785479 lncRNA downstream 59478 25737222 ~ 25737422 (-) True G689873
TU785476 lncRNA downstream 60970 25735460 ~ 25735930 (-) True G689870
TU785475 lncRNA downstream 61579 25734996 ~ 25735321 (-) True G689869
TU785502 lncRNA upstream 10661 25811055 ~ 25811397 (-) True G689895
TU785574 lncRNA upstream 107598 25907992 ~ 25908308 (-) True G689966
TU785589 lncRNA upstream 120430 25920824 ~ 25921483 (-) True G689981
TU785617 lncRNA upstream 143342 25943736 ~ 25943945 (-) True G690009
TU785629 lncRNA upstream 155369 25955763 ~ 25956270 (-) True G690021
XM_021612137.2 mRNA downstream 21872 25758877 ~ 25775028 (-) True LOC110529693
XM_021612138.2 mRNA downstream 21873 25758877 ~ 25775027 (-) False LOC110529693
XM_021612135.2 mRNA downstream 38550 25744024 ~ 25758350 (-) True LOC110529692
XM_021612136.2 mRNA downstream 38555 25744024 ~ 25758345 (-) False LOC110529692
XM_021612114.2 mRNA downstream 293465 25497573 ~ 25503435 (-) True LOC110529682
XM_036985174.1 mRNA upstream 926 25801320 ~ 25805433 (-) False LOC110529694
XM_021612140.2 mRNA upstream 926 25801320 ~ 25805570 (-) False LOC110529694
XM_036985176.1 mRNA upstream 54186 25854580 ~ 25873656 (-) False LOC110529696
XM_036985175.1 mRNA upstream 54186 25854580 ~ 25873677 (-) True LOC110529696
XR_002474428.2 mRNA upstream 192030 25992424 ~ 25997066 (-) False LOC110529697
TU785403 other downstream 132235 25664165 ~ 25664665 (-) True G689810
TU785308 other downstream 275612 25517566 ~ 25521288 (-) False G689723
TU785310 other downstream 275612 25518463 ~ 25521288 (-) False G689723
TU785268 other downstream 385768 25410823 ~ 25411132 (-) True G689685
TU785239 other downstream 389553 25376122 ~ 25407347 (-) True G689656
TU785453 other upstream 1570 25801964 ~ 25805475 (-) False LOC110529694
TU785454 other upstream 1636 25802030 ~ 25805475 (-) True LOC110529694
TU785641 other upstream 164785 25965179 ~ 25965493 (-) True G690033
TU785681 other upstream 190284 25990678 ~ 25991143 (-) True G690073
TU786474 other upstream 628721 26429115 ~ 26430843 (-) True cenpw

Expression Profile