RNA id: XM_021612141.2


Basic Information

Item Value
RNA id XM_021612141.2
length 2027
RNA type mRNA
GC content 0.50
exon number 9
gene id LOC110529695
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 25805901 ~ 25809907 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTGACAACAACGCGCTGGATCATGTGATAACCGCTTCCTCAAATGTGTGATCAGATGTGGTTTGTATTATTTTCAAAGCAGAGCATAGGCGACACCCTTGAGGCACTAACCGAACGCTGCTTTGcaagctgtaaaaaaaaataaaaataacccaGAATGCGATTTGCAGTAGCATTGTGTGTGCTGGCGCTCTTTGTGGCCACCCTGGCCCTGGACAATGGTCTGATGAGGACCCCTCCTATGGGCTGGTTGGCATGGGAACGCTTCCGCTGTGACATCGACTGTCAGAACGACCCCAAGAACTGCATCAGTGAGGTTCTGTTCCGGGACATGGCAGACAGGCTGGCCGAGGATGGCTGGAGGGAGCTGGGATATGTCTACGTCAACATAGACGATTGCTGGGCCTCCAAGGACAGAGACAGTAATGgacgcctgcaggctgaccctaAGCGGTTCCCAAGTGGGATCCCCAACCTGGCGAGCTACATCCATGACCGGGGGCTGAAGCTGGGTATCTATGGGGACATGGGCACACTCACATGTGGAGGGTACCCTGGGACCCCCCTGGACAAGATCACTATAGACGCTCAGACTTTCGCTGACTGGAAAGTGGACATGCTGAAGTTTGACGGCTGCTACTCCAACGCTACGGAGCAGgagcaggGCTACCCTGCCATGTCAAAGGCTCTGAACGCTACCGGACGCCCCATTGGCTACTCATGCAGTTGGCCAGCCTACCAGGGTGGACTCCCACCCAAGGTGAACTACACCCAACTGGGAGAGATCTGTAACCTGTGGCGTAACTATGGTGACATAGAGGACTCGTGGAATAGTGTGCTGAGCATTGCTGATTGGTTCTTCAACAACCAAGACGTCCTGCAGCCTGCAGCTGGACCCGGCCGGTGGAATGACCCTGACATGCTGGTGGTCGGGGACTTCGGGCTGAGCATGGATCAGTCTCGGTCTCAGATGGCTCTGTGGGCCATCATGGCTGCTCCTCTCTTCATGTCCAACGACCTGAGGACCATTAGTAGCGGGGCACGCACCATCCTGCAGAACAAGGTGGCCATCGGCATCAACCAGGACCCCATGGGCGTCCAGGGTAGACGCCTGATCAAGGAGAAGAGCGGTATTGAGGTGTTCTGGCGCCCTCTGTCTGATAAGGCCAGTGCTCTAGTGTTCTTCAGTCGTCGTACTGACATGCCTTACCGCTACCAGGCCTCCCTGGGACAACTCAACTACACCACTGGCAGCTACAAGATCTATGATGTGTTTGCGGAGCGGGAAATGCCCACACTGAAGGACTCCACAAACTTTGTTGTGTCCATCAACCCCTCGGGTGTGGTCATGTGGTATATCTCAGCCCCTGCTGACCAGGACGAGAACACCCACATCGGGGGAAAGCTCAGGGGACCCGCCTTCCATCGCCACGCCAACGGTATCTCACCCATTGTACTGTAACCTTCCCCTTTGTCTTTGATGTCTCCTTAAGATGATACCTGTTTTCTCCCAGCTCTACTTTTTCACTAATCCAACATAATATAAGCCATTTAGCAGACTTTTTAATCCAAAGCGATTTAGTCATGCGTGcttacattttacgtatgggtaaTCCCGGGAACATTCTCATCAATGAATACCTCAAGGAAGGGAGCAAAGTAGTTCTTTCCTGAATGGACAGAGCAAATGCTATTTTAATGTTGTTCCACAAAGATGACAGTTGTCTCCCTGAGATGACATCACTCTACTCAGGAATGTTCTGATTATGCAATCGACAGTAACCATGATGATGCTGGTCACTGCCACTGCACTGTAGTTTTTTATTTTCGCAAGTTTTAATTTAAAAGGTACTCCTATTTTCATTGCACTAGTTTTTAATGTTCTGGATTTAAGGGCTCTGGTGGGAAATGTTTTCAAGGAATATCAGGAAATTATCAGATAGCTTATTTTAAATGATTGATGCTGTGAatgatttttgtattttcttaagtGTTCAAAAACCAATAAACACTTTTTTTCCCAGTG

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function

KEGG:

id description
K01204 NAGA; alpha-N-acetylgalactosaminidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU785098 lncRNA upstream 5107 25800364 ~ 25800794 (+) True G689538
TU785088 lncRNA upstream 13277 25792348 ~ 25792624 (+) True G689528
TU785080 lncRNA upstream 21075 25784614 ~ 25784826 (+) True G689520
TU785079 lncRNA upstream 21833 25783781 ~ 25784068 (+) True G689519
TU785077 lncRNA upstream 24811 25780859 ~ 25781090 (+) True G689517
TU785102 lncRNA downstream 1694 25811601 ~ 25811820 (+) True G689542
TU785104 lncRNA downstream 6179 25816086 ~ 25856112 (+) True G689543
TU785536 lncRNA downstream 69035 25878942 ~ 25879180 (+) True G689929
TU785577 lncRNA downstream 103341 25913248 ~ 25913511 (+) True G689969
TU785595 lncRNA downstream 115856 25925763 ~ 25925966 (+) True G689987
XM_036985173.1 mRNA upstream 72101 25693543 ~ 25733800 (+) False LOC110529691
XM_036985172.1 mRNA upstream 72101 25697206 ~ 25733800 (+) False LOC110529691
XM_021612132.2 mRNA upstream 120024 25678604 ~ 25685877 (+) False LOC110529690
XM_021612133.2 mRNA upstream 120024 25678605 ~ 25685877 (+) False LOC110529690
XM_021612129.2 mRNA upstream 129814 25653300 ~ 25676087 (+) False LOC110529689
XM_021612144.2 mRNA downstream 193688 26003595 ~ 26006629 (+) True LOC110529698
XM_021612145.2 mRNA downstream 267590 26077497 ~ 26080970 (+) True LOC110529699
XM_021612148.2 mRNA downstream 305099 26115006 ~ 26118968 (+) True ngs
XM_036985178.1 mRNA downstream 323290 26133197 ~ 26172347 (+) False LOC110529702
XM_036985179.1 mRNA downstream 323290 26133197 ~ 26172347 (+) False LOC110529702
TU784988 other upstream 124174 25678652 ~ 25681727 (+) False LOC110529690
TU784318 other upstream 744451 25058953 ~ 25061450 (+) True G688823
TU784088 other upstream 821075 24982729 ~ 24984826 (+) True G688613
TU782829 other upstream 1814902 23984445 ~ 23990999 (+) False LOC110529210
TU785811 other downstream 323284 26133191 ~ 26195544 (+) True LOC110529702
TU786082 other downstream 571221 26381128 ~ 26383426 (+) True LOC110529706
TU787679 other downstream 1746377 27556284 ~ 27557019 (+) True jag2b
TU788176 other downstream 2085794 27895701 ~ 27895987 (+) True G692343
TU788158 other downstream 2160569 27970476 ~ 27972016 (+) True xrcc3

Expression Profile