RNA id: XM_036985175.1


Basic Information

Item Value
RNA id XM_036985175.1
length 3027
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC110529696
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 25854580 ~ 25873677 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggcacAAGGTGAgcagtgtggttaatgttagagttaaggttagtattaggtttaaaatcacattttaagaagaagAATTGTACAAATGGGCGGGGTTTAGCCTATGTCTTTGTGGGTATAGAAGCTAGAGACGACCATCCCTCCTTGTCTCACGACAATTCGACAGTGTTGCCGCACAAGAGACCGAAACCGGAGGAGATGTTATAGACCTCCGAAAATATTTTACGGTGATGCGTTAACGTTTTCAAGAGGATATAAGAGAGCTGGGATCAAGCAAACCGGGAACGAGCAGGAAGCGAAAATAAACGGCAGTTTCTGTCACGGTTGGAAGTTTTGACGGATTTCAAAACAGTGGATTATGTGAATGTGATTGTAAACACTGGTCTGGGGTTGACACGAATGTAGGCTAATTGCGTAGGACTGAAAGTTTCTGTAGGCTAATAAATAGCatttttccttttttccaatgGACTCGCATTTGGAGACTGCTTGCACACAAAGTATGGAATTACCCCTGTAATGTGGATTGCAATTTCATTTGAAGAAAATAAAGGTCTACTCCAGAACAATGTGAAAAGATACGCGTCCTGGATTCTAATGTTTCTGGATATCTTGAAAATTATTGGCAACAGTTGAAATTATGCTCAACCGATTTTTGCTCAGGTGTCTTGCCTGCTCCGACCGTGGGACCAAAATGGATTTGACGCCACTACAGACCCCGGTCCCCCTTTTACAGAAGTTCTAACAGTTATTACACTTTGCTTTACTGTTTTAAACTTTACAAATGCTTTGGAAGAAATCGCCAGACGACCCGCTTGGATTTTAAATCTACATTTGCATTTGGAATTTCAATCATGAACTTTGACAGTTTGATAACATTATTTCTCCTGACACTTCTGTATTTGTCAGCTGTCAAGAGTGCCCACATACctaaggaaggagggagaagtgCGCATGACGGCGTGATCTCCTTCATGGAGGTGTACAATAAGAGCCTGTGTCAGCCCAGGGAGCTGCTGGTAGAGATCCTACAGGAGTACCCAGAGGAGGTAGAACACATCTTCATCCCATCCTGTGTGGTGCTGACACGCTGTGCAGGCTGCTGCAACGACGAGATGCTACAATGTACGCCAACCTCCACGCATAACGTCACCATGGAGATAAAAAGAATAAAACCCCACAAGCAACAAAATGATATCTTCATGAGTTTTACAGAACACAATGCATGTGAATGCAGGCCAAAGAATGAAGTGAAAGAACAGAAAGAAAAAGAACCCTGGAAAGGCAAGGGCAAAGGCCAAAAGAGAAAGCGAAAGAAAAAGCGTGACAAAAAGAATCGCCACTCtcaGTGCGAGCCATGTTGTGATGGCTGCTTAGCGAGGAGAAAGCGGTTGTTCATCCAGAACCCTCTGACCTGCCAGTGTTCCTGCAGAAACTCTGACGCCGACTGCAGGGCACGTCAGCTGGAGCTCAACGAGAGGTCCTgcagATGTGACAAGCCCAGGAGATGAGTCTAAGCTTAAGATGAAACAACGTGAAGGGACATTCACAAGATATTTCATAGCACTTTCAACTCTGAGCTTATCTTCTTTGTGGAAAGCATTCCCCTGGACTGACTGAGAAACAGCagtgagaaaagagagggggagagataaagaaataatacattaatagAAAAATAATCCCAATGTATCTGCATatactaagagagagagaaagaaaaagtacAGAATTTGTATTGCTGCTAAAAGAGCTAACTAAAACCCATCGTTTGGCGTTTGACTGGACTACGGTTTTGTTGTTGATTCATTTATGCAAATACTTCACTGGATATGTGTGAGTACTGTGGTTATGTGTTAAATCATGAGGAACAAAACTTTGCTATGTGGTAGGTATATCcacagaagagaagaggaagaggaaggaagaaCATTCTTCCTGACCCATAGACTCCCTTTGCAGGAGCCCAATGGCAATGGCAGGACAGCCAATGGGAGATGGGGATCCGTCCCTTTATGACAGCACTTCCTTTTCCTTAAAGGAAGTTCTAGAACTGATGCGTGGAACGTGTGGAAAGCTAGAACTGTGCATTTTGCTGGCCTAGCTAGCAGCGGAACTGGATTTGGAGTGCCATAATACCCAAAGGGATGCTGATGATTGATTTTGGTATACATGGAAACCACTAGAAACAACTGATACTGTAGCTTGATTCCATTGAGAAACTGCCTCACAAACTGTGCTAATCACTTTAGAGTGAGAAATCCTGAATTAGCTTCTTaaattatttttgtttattttgaggggaggggagggggatgttaTGCTGTCTGTGGTTGAACTCAATACAGAATGCAATAGTATCGATGGCAAGCAGTCTGTATATACTATACATACTTAATATCCCTTATGTCATAGTCCACTATAGATAATTTATAATGTTAGAGTATTTTCAGTATTCAGTCCTCTACCCATATTTAATTTGATCTATTTATATATCAAGTGTTATGTTCCTTTGGGTTTCCCCCCTTCCTGCTATGTGATGCCATTGTGGTCTCCATTCTGCCTAGCTACAAGGAGATACTGCTCTAGGCTTTTATAAGAAAAAGAAAAACCTTTACGTTAACATTCCTGAAATGGATCATTTGTATGGACGCCATCTATTCTGGATTTATCAACCCTTTTTTATAGAGGGTGGAGGTTCTGCGTGTGATTTTTAACCTGCTCTATGGtcttggcgtgtgtgtgtgtgtgcgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttagagaggcagaggaggctTATGCTTGTCTTGAGCTCCATCACGCAGATAACAATAAACCATTGCTAAAAGAAAGCTTGGCCTACCAAGTCAACTGTTTGTATTAAAGCTAGCAATCTGCAATATCAAGAATATATGATTTCATGATAATAGTACTTGTGGTTTCTTTTCCAAtattaacatgtttttttctgtGACAGTGAAAAGTAGTAAAGcatatttatttacaaatta

Function

GO: NA

KEGG:

id description
K05448 VEGFA; vascular endothelial growth factor A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU785502 lncRNA downstream 43183 25811055 ~ 25811397 (-) True G689895
TU785489 lncRNA downstream 75218 25779126 ~ 25779362 (-) True G689883
TU785480 lncRNA downstream 116879 25737493 ~ 25737701 (-) True G689874
TU785479 lncRNA downstream 117158 25737222 ~ 25737422 (-) True G689873
TU785476 lncRNA downstream 118650 25735460 ~ 25735930 (-) True G689870
TU785574 lncRNA upstream 34315 25907992 ~ 25908308 (-) True G689966
TU785589 lncRNA upstream 47147 25920824 ~ 25921483 (-) True G689981
TU785617 lncRNA upstream 70059 25943736 ~ 25943945 (-) True G690009
TU785629 lncRNA upstream 82086 25955763 ~ 25956270 (-) True G690021
TU785655 lncRNA upstream 99862 25973539 ~ 25973784 (-) True G690047
XM_021612140.2 mRNA downstream 49010 25801320 ~ 25805570 (-) False LOC110529694
XM_036985174.1 mRNA downstream 49147 25801320 ~ 25805433 (-) False LOC110529694
LOC110529218 mRNA downstream 54186 25796900 ~ 25800394 (-) True LOC110529218
XM_021612137.2 mRNA downstream 79552 25758877 ~ 25775028 (-) True LOC110529693
XM_021612138.2 mRNA downstream 79553 25758877 ~ 25775027 (-) False LOC110529693
XR_002474428.2 mRNA upstream 118747 25992424 ~ 25997066 (-) False LOC110529697
XR_005052847.1 mRNA upstream 118747 25992424 ~ 25998685 (-) False LOC110529697
LOC110529219 mRNA upstream 133205 26006882 ~ 26017782 (-) True LOC110529219
XM_036985177.1 mRNA upstream 213769 26087446 ~ 26094609 (-) True LOC110529220
XM_021612146.2 mRNA upstream 221264 26094941 ~ 26106801 (-) True LOC110529700
TU785453 other downstream 49105 25801964 ~ 25805475 (-) False LOC110529694
TU785454 other downstream 49105 25802030 ~ 25805475 (-) True LOC110529694
TU785403 other downstream 189915 25664165 ~ 25664665 (-) True G689810
TU785308 other downstream 333292 25517566 ~ 25521288 (-) False G689723
TU785641 other upstream 91502 25965179 ~ 25965493 (-) True G690033
TU785681 other upstream 117001 25990678 ~ 25991143 (-) True G690073
TU786474 other upstream 555438 26429115 ~ 26430843 (-) True cenpw
TU787231 other upstream 990533 26864210 ~ 26868078 (-) True G691447
TU787547 other upstream 1441891 27315568 ~ 27315935 (-) True G691747

Expression Profile