RNA id: XM_036985177.1


Basic Information

Item Value
RNA id XM_036985177.1
length 1896
RNA type mRNA
GC content 0.55
exon number 6
gene id LOC110529220
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 26087446 ~ 26094609 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACCCTACATTCTAGTGTTGCCTGGATTTAATTTTGTAATGGTCTAAAAGTTTCTAGAACTACTGATCATCTTGCAACAAATAAAAGTCATAGGCTACACCACCATACAATAGTTAGGCCTATATGACTTTAGTAGAGTAGCCTATGCTATTGCCATTGAGTAGCCTATGCTATTGCCCAACTGATCGCAAAAACAGAGTTTCAAAGGTACAGCTATCGTGACGTCACTTATCCGCGGCAGAGTGAGAGAGCGGCGACGATCGGCTGCGGAGGATACCGACCCCGCAGCGGGGACGGGACAACCGCCAGGCGAGATGGCCCCTATCCCTTTCTTCCTTGCATCCCGCATCGCAACGACCCCTTTGCACGCATGAAGCCCCCGTTGATGAAGCCAAAACCGGCCAAAGCAAGGCAGAAAAAGGccactgagagagagaatgtactGGCGCGTCGGGTTCGCCTGGACGCGCTCGTTTGTGGTTGATCTTGGACGGAACCAGAACTTCTCCTTCGGCTTGTGCGGCTCCAATGAGCAGCTCTCGTTGTATGGGTACATCATCGCCTACCCTCTGCAGGACTACGGCGGGATCATGCCGCTCCTTGGGTCGGACTCGTGGTGGCGGAAAACGCTCTATCTGACCGGGGGCGCTCTGCTTGCCGCCGCTGCCTATCTACTGCACGAGCTGCTCGCCATCAGGAAAGAACAGGAGCTGAACTCTAAAGATACCATCATCCTCCACCAGTTCTCCAGGCCAAAGAGTGgtgtcccatctctctcccccttctgccTCAAGTTAGAGACCTACCTGCGCATGGTGGACCTGCcctaccagAACTACTTTGATGGGAAGCTGTCTCCCCAGGGGAAGATGCCATGGATAGAGTACAACCAGGAGCAGGTGTCTGGTACAGAGTTTATCATCGACTTCCTGGAGGAGAAGCTGGGCGTGAGCCTCAACAAGAACCTCAGTCCCCCGGAGAAGGCTGTGTCCCAGGCTGTCACCAAGATGGTGGAGGAACACTTCTACTGGACCATAGCGTACTGTCAGTGGGTGGACAACCTGGAGGAGACCCAGAAGATGCTGGCAGTGAGTGGGCCACTGAGTGACCTACTCAAGTGGATCCTGAGTCGCCTGACTGGCAGCATCGTGAAGAGGGAGATGTACGGCCACGGGATTGGACGATTCACCAGGGAGGAGGTCTACGCTCTAATGGAGAAGGACATGCGGACGCTGGCCACCCTACTCGGTGATAAGAAGTACCTGATGGGTCCTAAGCTGTCTATggtggatgccactgtgttcagCCATCTAGCCCCTGCCATGTGGACCCTGCCGGGCACAAGGCCAGAGCAACTCATCAAAGGCGAGCTGATTAACCTGGCCATTTACTGTGAGAGGATCCGCCGGCGCTTCTGGCCCGAGTGGTTCGTTGATCTGGAGGATTTCTGTTACGATGACACCACAGAGGACGACGACTCCCCGTCCAAACTCCAGGACCTGGGGCTCTACTCCCGTACAGACACCTTCCAGGACGAGGCCAgccctcctcacacacacacaatctcaccaGACAGTGACCTCACGGGCCACTCGCTCTGCGACTCGGACATGGACACAGAGTGCTCTGAGATGGAGCAGCTCAAGTGTTGACTGCCCTAtgacacacacaagacacacacacaccgcctggATGGGTCTCgtgccccctccccccccccccccctccccctccccccaaacaCAATGCCCTGTACCTGTTGAGCAGGGAATAACTACTGGGGTGCATTTCTGTTGCCAGAGGCTGTTGTTTGTGTTAATGAGTGATGGATTCAGAGATTCTACACACACAATGGACTGCAGGAATTGAAAGACTGAATAGAGATAGAGAAgtaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU785884 lncRNA downstream 14304 26072870 ~ 26073142 (-) True G690237
TU785873 lncRNA downstream 24345 26062874 ~ 26063101 (-) True G690231
TU785861 lncRNA downstream 51673 26035519 ~ 26035773 (-) True G690219
TU785724 lncRNA downstream 64662 26022582 ~ 26022784 (-) True G690115
TU785721 lncRNA downstream 67198 26020049 ~ 26020248 (-) True G690112
TU785932 lncRNA upstream 68005 26162614 ~ 26166381 (-) True G690280
TU786395 lncRNA upstream 145153 26239762 ~ 26240225 (-) True G690691
TU786396 lncRNA upstream 146022 26240631 ~ 26240834 (-) True G690692
TU786397 lncRNA upstream 147314 26241923 ~ 26242172 (-) True G690693
TU786408 lncRNA upstream 149901 26244510 ~ 26244983 (-) False G690697
LOC110529219 mRNA downstream 69664 26006882 ~ 26017782 (-) True LOC110529219
XR_005052847.1 mRNA downstream 88761 25992424 ~ 25998685 (-) False LOC110529697
XR_002474428.2 mRNA downstream 90380 25992424 ~ 25997066 (-) False LOC110529697
XM_036985175.1 mRNA downstream 213769 25854580 ~ 25873677 (-) True LOC110529696
XM_036985176.1 mRNA downstream 213790 25854580 ~ 25873656 (-) False LOC110529696
XM_021612146.2 mRNA upstream 332 26094941 ~ 26106801 (-) True LOC110529700
XM_036986843.1 mRNA upstream 25856 26120465 ~ 26122280 (-) True LOC110531082
XM_021612155.2 mRNA upstream 77837 26172446 ~ 26175639 (-) True LOC110529703
XM_021612161.2 mRNA upstream 327886 26422495 ~ 26426074 (-) True LOC110529708
XM_021612162.2 mRNA upstream 334431 26429040 ~ 26430888 (-) False cenpw
TU785681 other downstream 96303 25990678 ~ 25991143 (-) True G690073
TU785641 other downstream 121953 25965179 ~ 25965493 (-) True G690033
TU785453 other downstream 281971 25801964 ~ 25805475 (-) False LOC110529694
TU785454 other downstream 281971 25802030 ~ 25805475 (-) True LOC110529694
TU785403 other downstream 422781 25664165 ~ 25664665 (-) True G689810
TU786474 other upstream 334506 26429115 ~ 26430843 (-) True cenpw
TU787231 other upstream 769601 26864210 ~ 26868078 (-) True G691447
TU787547 other upstream 1220959 27315568 ~ 27315935 (-) True G691747
TU788741 other upstream 2021127 28115736 ~ 28116048 (-) True G692859
TU789000 other upstream 2384208 28478817 ~ 28481898 (-) True si:dkey-85n7.8

Expression Profile