RNA id: XM_036985184.1


Basic Information

Item Value
RNA id XM_036985184.1
length 4199
RNA type mRNA
GC content 0.48
exon number 24
gene id LOC110529702
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 26133191 ~ 26195544 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATATAGTCCAAATAAACATACATTCGAGTGAGTGGAAGACACAATTATTTCCAACATCTCCATACAGTATAGCCTAGTAGCCTATTCAGCCTCCTTGGATTGGTGCGCCGGTCAGTGTTGGCTCTTGGCACAGGGGTTAGAGGCACATCTGCTGTCGACAGAGGCTCGTGGTCCTTCTCTATCAGACATTCTTGATCAGAAGAAAACGTCCGGAGCGAAGATTTTAATCAACGAGCCGACTGTGCGTCACTACAAAATCGTTATTTTGAAAGCGCCCCCGTGCATTTTACTCCTTCAGTTTGCCTTTTTTCCGTGCGTCGTGGAGAAGGAAACACTGACGGTGTATCCGATGCTCCTGCAAAACGGATAACGGAATATTCTATGTATGTTTGACGAAGGTTGTACATTTGGCCAAACCCATTCATTGTAAGGATAAGAAACGCTGCGCGGTCGCAACGTTTTCAATCTCCTGTTTGCTTCTTTATTATTGCTTTATTGCTGTGGGCTGAGGAAATACATTGTATTTCTAGCGTAGTGTTACGTAAGAGTGACTTTATCCAAGGTGCTGAATTGAACGGTATAGCGGGGACACAGAAGGAAGAAGGCAATCTTGTTTCAGTCTACCCAGAAGGTCACAGGCCTATACGTGGGAGATTTGGAGAGGACCGCACAGCACTGGCATCGTTGATACCCGTATTCCTGTAGCAAGACCGGCTTTTATTTCTCTCTTTGGTTAAATACATTCTTAAGGTGGTCGACTACACGAGGAGAAAATGTCGGGGCAGACGCTCACGGATCGTATTGCCGCTGCGCAGTACCAGTTGACGGGATCAGAGGTATCTCGCGCCGTCTGCAAAGCCACCACTCACGAGGTGATGGCGCCCAAGAAAAAGCACCTGGAATATCTGATATCGGCCACCAATGCGACCAACGTGAACATCCCTCAGATGGCTGACACTCTGTTTGAGAGGGCCACCAACGCCAGCTGGATTGTCGTCTTCAAGGCCCTAGTCACCACACACCACATGTGTGTCCATGGAAACGAGAGGTTCATCCAATACCTGGCCTCCAGGACCGCTCTGTTCAACCTCAGCAACTTTATCGACAAAACAGGCTCCCACGGCTATGACATGTCTACGTTCATCAGACGTTACGGCCGCTACCTCAATGAGAGGGCCTTTGCCTATCGCCAGATGGCTTTCGACTTCACCAAAGTCAAGAAGGGTGCTGAAGGGGTGATGAGGACAATGGCTCCAGACAAGCTGTTAAAAGGCATGCCCGTCCTGCAGACCCAGATCGACACACTGCTGGAGTTTGATgtccACCCCAAGGAGCTGAATAACCCTATCATCAACGCAGCGTTCCTGCTGCTCTTCAAGGATCTGGTCAAGCTGTTTGCCTCCTACAACGATGGGGTCATCAATCTATTAGAGAAATACTTTAAGATGAAGAAGAGCGACTGCAAGGAGGCCTTGGAGATCTATAAGAGGTTCCTGACCAGGGTCACCAAGATCGGAGAGTTCATGAAGCTCGCTGAGACAGTCGGTGTCGAAAAAAATGACATTCCAGACATCAACTATGCTCCCAGTAGCATCCTGGAGTCTCTGGAGACACACATGAACAGCTTGGAGGGGAAGAAGGGTGAAGGGTCTCCAACAAAGGGGTCCCCCACCAATAACGTGTCCCCGACCTCCACCCCCGCCAAATCTGCAGCCGCCGTGCCCACCCTAGTGCCGCCCCCCGAAGAAGCCACTGATTCTCTGTTGGATCTGgaccctctgtcctcctctggtcCGTCAGCAGGAGCCTCAGCAGCCCCTATGTCCTGGGGAGACCTCCTTGGATCAGACCCCTTTGCCCCCACTGGTAGCAGCTCAAATGCAGTAGGCCCAGGGCTGGACCTGTTTGCCATGATGCCAATGGAGAAcaactgctttaactcagtggCGCCCCCTCCTGCCCCCTCATCCACCATCGCAGCACCCAtcccccccaccaccccatcgATAGACCTCTTCAGTGACTCCACCGGTGGAGAAACCCAGCCTGCTGCACCTGCAGCTGCCTCTGGTGCTGAGCTGATGGCAGGGGATGTGATGATGCCTGCCATGACGCCCCAGACTGGGGCCGCCTCATCTCCAGTTAAACATATGGGAGGGGACCTAGACGCCACCATGGCTAACATGGCTAGCAATCTGGGAATGGGGAGCCAAAAAACGGGGGAGAACACGATGGGAAGTGGAGGCTGGTCAACTCCTCAGGTAGCTCCTCCAAGTTGGGGCGCTCCCATGAACGTTCCAATGGGATCCCCTTCTTTTATGGGGTCTTACCAAGGATTCAGCATGgGCGGGGCGGCCGGCGCTGGAGCTCCCATGATGCCCATGGTTAGGCCAGGCTTTGGAGCCCCTGCAGCCCCAGGAGCACCgATGGGATCTCCAGGGATGGCCGGGAGCCCGAGGAGGCCTCCGCCCCCCAAGAATGCCCTGGATGACCTCAACATCAAGGACTTCATGTAAACCCCTCTAACCCATCCCTCTGAGaGGTTGTTGTTATGTCTGGAgctgtggatgtggatgtgtgcACCCCCGTCTCCCTCCTGTCACGCCCCAGCCCCTTCAGCCAATCAACCATCAGCACTACGACCCCTGTCCTCTGACTTCCCCGTAACCTCTGTCTGCTGTTGTAACAAAAGCTGTGGATGTGAATCATAGACACAGAAAACTAaactgtgtatgagtgtgtgtgtacttcaATGTTATCCTTTACCTAAACTAAGAAAAAAATGTACCATAAAAAATGATAGTGTATTTAGATTTGTTCTGGAACTCCCACGTGTCAGCTGACTTGGAATGGTGGATCTGTGTTGATTTTCTTGCGCGTTTCCCAGACGAGGATTGTGTTGTTAACCGTGGACTGTGTTCGGTGTGTGTAAACCTCACTGGCCAATCCCTGCCCTATCCTGTCCCTCGCTATCCAATCAAATTCTGTATATTGCTGTCTTTGTAACATCATTCAACACTTAGTTGTACTCCTCTCCATTAATTGAGCCACCCAGCCTCTTTGAGAACAGATGCAGTAATATTGAAATATGTACAACTGTCACCACAAATCTGGGTTTACGAGATGACAAATCATACgacaaaatgttttgtttttattttgtctaTTTTTTTGATTGTGTGTTACATGCAACATTTGTGGACTATGTTCAAATTGACATATGCATTTTAGAATATTTTTAAGTATAGATTATACATATATTTCTTTAATCTTTATTTTGAGAGAAAATGTATCATATATTTTAGTTATGTCTATGAATTCTAGGTTTTTAAAAAATTCAAGCAGTTTCGAAAAATATCTCTCATCTGTATTTGGAGGCAGCACTGAATGCAAACTCAGTCCCCAGTGTTTACTGTGGCTCTCCCTGCTGGTGTGGAGTGTTACTGCATTTGACCATGTCAAGTGAAGTTGATCTAGGCTGCATCCACATACTTTAAAAAATCCTCATTTACTTGTCTCCTTTACTTAACGGCCAATTATCTGAATTGAATTGATAGGTGAAAGGCAATTGGTGAAAACCAACCAGTGGTCATGAAATgaaggagacaaggaaaggaggTTTGTAAATATTGTTGGGACACAGCCCATGTCAACCTAAGGCTTAGGGggcaaactcattccacggaggacCGAGTGTCTGCAGGCTTTCGCTCCTACTTTATACTTAATTGATGAATTTAAGGTCACTAATGagtaaggaactccccacacGTGGTTGTCTAGGGCTTACTTGAAAGGACAAACCAAAAAAAACAGCAGACACTAGGCACTTCATGGAATAATTTTGACAACCCTGACCTAAGGTCATTGTGGAGCAGTGATCAGTAGAGTTGTATTGTCTCCCGTAGCAACACTCCAGAGGTGTTGGGAACTCGTTAGCTGTAAACCGCTCAGATATACACTGGATGTTCCATGTGTTGTTTTTCTTCCAAAGTGACTATCGTAATCTGTTGTGGGAAAAAAAGTATtgagaaagaaaaagaggaaTAAAacgtataaaataaaaaatgtggatAACAATATTTGCTATATGTTTGGTTGAAGGCAGTGTTTGGTTCTTGGATGgcatcactcctctcctctcccccacttgCATGTGAGTCCCTTGAGatgcaataaaatacaaaatacactgGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU785745 lncRNA upstream 45602 26083741 ~ 26087595 (+) False G690135
TU785746 lncRNA upstream 45602 26083741 ~ 26087595 (+) False G690135
TU785747 lncRNA upstream 45602 26083741 ~ 26087595 (+) False G690135
TU785748 lncRNA upstream 45602 26083741 ~ 26087595 (+) True G690135
TU785773 lncRNA upstream 66275 26066607 ~ 26066922 (+) True G690148
TU785993 lncRNA downstream 70012 26242359 ~ 26242656 (+) True G690333
TU785958 lncRNA downstream 75736 26248083 ~ 26250529 (+) True G690304
TU785966 lncRNA downstream 78270 26250617 ~ 26252906 (+) False G690307
TU785965 lncRNA downstream 78444 26250791 ~ 26252930 (+) False G690307
TU785967 lncRNA downstream 78444 26250791 ~ 26252906 (+) True G690307
XM_021612148.2 mRNA upstream 14229 26115006 ~ 26118968 (+) True ngs
XM_021612145.2 mRNA upstream 52227 26077497 ~ 26080970 (+) True LOC110529699
XM_021612144.2 mRNA upstream 126568 26003595 ~ 26006629 (+) True LOC110529698
XM_021612141.2 mRNA upstream 323290 25805901 ~ 25809907 (+) True LOC110529695
XM_036985172.1 mRNA upstream 399397 25697206 ~ 25733800 (+) False LOC110529691
XM_021612156.2 mRNA downstream 93912 26266259 ~ 26271258 (+) False LOC110529705
XM_021612157.2 mRNA downstream 93918 26266265 ~ 26271258 (+) True LOC110529705
XM_021612159.2 mRNA downstream 190830 26363177 ~ 26376176 (+) True LOC110529707
XM_021612158.2 mRNA downstream 208750 26381097 ~ 26385684 (+) False LOC110529706
XM_036985187.1 mRNA downstream 208750 26381097 ~ 26389879 (+) False LOC110529706
TU784988 other upstream 451470 25678652 ~ 25681727 (+) False LOC110529690
TU784318 other upstream 1071747 25058953 ~ 25061450 (+) True G688823
TU784088 other upstream 1148371 24982729 ~ 24984826 (+) True G688613
TU782829 other upstream 2142198 23984445 ~ 23990999 (+) False LOC110529210
TU786082 other downstream 208781 26381128 ~ 26383426 (+) True LOC110529706
TU787679 other downstream 1383937 27556284 ~ 27557019 (+) True jag2b
TU788176 other downstream 1723354 27895701 ~ 27895987 (+) True G692343
TU788158 other downstream 1798129 27970476 ~ 27972016 (+) True xrcc3
TU788261 other downstream 1897553 28069900 ~ 28070228 (+) True G692424

Expression Profile