RNA id: XM_036985188.1


Basic Information

Item Value
RNA id XM_036985188.1
length 3695
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC110529706
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 26381097 ~ 26393547 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCGATTTTGTCAAACCCCGCCCGAACTATTTGATACGgactctgcagaagtcagggcattcatacttcttgcgcttcaatgcggagctatatggagccctctgcattgttacaacatttgagagaCGCATGGCGTGGCTCTGGAGGCATCACAACTGCATCACACCATCCTTATGGCGCCTCCAACCACATTTTCgaatcaagcataaattggctcaTAGTCTGAGGATTCCCACATTCCTATCCACACCAAATATATTTTGGTTTTGAGCTATCAGATGCCTTTCGCAACACACTGTTTATGTCGACAAGTGTCCATCATGTCAGTGAACTATTTGGGTCAGAACCTAATGGTGGTCGCATGAGGCGCGCGATGATATTGTGCAACCTTTATCAACAGCAATGGCAATGTCCAAATAAATAAACTATAAAATAGTAGTAAAATTGGAGTAAAGTACCCGCTGACGCGCCAGATATCAAGTTTTTCGAGAAAAAAAACCCGAATTAAAATAATGTTAGCGCAGGTGTCACATATATGCTACATTTTGGCAATCAAAATTGTAAACAAATAAGAGTAGTTTGGAGTCACAAAACGAAATCTGCCAAGCACCCCAAAGCGGAGTAGCAACAGGAGTGCCTATTGGCTCAGAGCTCGGCAGCTGAAATAGCTATGCAAACAGTTTCCCTCTCTACATTGCTTTTTAATTATAGACAGGATGCGAGTGACGACAGTCCTCCCATCGAGACCTCAAATGCTGGAATAAATTTGACATTAAGATACTTGATCTTGGCTCCAGTGATGCGACGTAAATACGAGGTGCACTATAAAGCCTGGGTCCCCCTCTGGAACAGAAGTTGTTTACCCTGAAAAAAGGTGCCTGCTCTGGACATAACCCTGCTCAGGCTTGACAAGAGAGGGTTCCTGTAAAATCCAATCCGCGGGACTTTAGAACAGAGGCACAAAAGCGAGTATTTCGCGACAAGGGGACTGACTCTGGAGCGGTGGAAGCGCAACCGACACCGGGCAAACAGAGGATCTCAAGAAATTCACCGTGAATGCCTTGGCTAGACTGAAATCAGGATTAATTATCTGCCACTGCGATATATCCTCAGCGATTAACAATAAAATCGTCAAGGAGATTATTGAACAGCCAGTGTTCCTCTAACATTTCCACACCTTGGTGACCCCTTAAATACAAAAAGCTAGGAAGTTGAAAAAGAAAGGAAGTTAGAAAGTTTAAacagaagaaggaagaagaagtTGTTGGTGGAAGAAAATAAAGTTGTGACAGGAAGTAAAAAGTTGCTGCAGGAAGCGGCCCAAAATGGCGGCCACCGAACTTCAGCGCGGTCTGGAGCAGGCTGGGCGGGGCtggggaacagagaggggggagctTCTGGACAGCTTCGACTCAGAGATGCAGGAATGGGAGGACCAGCTGCAGGACATGCAGAGGAAGATAGAGGAGCTTTACAATGAGGTGCAGGCTCGTAGAGGGGGAAATGATGTCACCATGGGCAACGGCAAAAATGATAGGATGCACCATGGCAATGGCTTCTGTGACCGGCCTGGCAGCCATAGCAACAGAACCAAGGACCACCCAAGAGCTGTTGTAGTGCCAAATCACTGTAGCAATGGTTGTAGTCACGGCCCCAACGGTTACGGCGAACCTGTCAACCATCAGATTGGTGGCTATTATCCAAATTGCAACGGTGCGGTGGAACTTGAAGACTTGTTGCAGGATTATCTTGGACATGGTCACGGAAAGACCTGGAAGACCAACTCAGCTCTCAACAATGTAACCCTTGTCCCACTTCTCTCTCAGCATCTGAAGGAGATCACTAAAGGGAGCCAGGATCAGTCTGTGCACCAGGATGCGATGAAGAGGAGGCCTGTTGAGAATGAGAGGATTGGTCAGGTGCGGTTTGCGGACGAGGAGGCTGAGAACAGGAAAAACAGAGTGTCACACAGAAAGAGTTCCCCCTGCAGGGACCTTAACAAGCCCCCTCATAGACAGAGAGAAGGCCCTCCTGTACCCCCCCGCTCCACCTCCCAGGTTGCCTCATCCGAGACTTCCCCAGCCCTCGACAGAAAGTCCCACTCCCCTGGGGTCCTTGTGGACAAGACGTGTGGTAGCCCCTCGGTCCTCAGGAAGTTTGGGGCCATGCTCCAGAAGAACGAGGGGAAAACCCTCACCGACACCGGTGTGGTGACCAACCAGGTGCCTATCGAGAACAAGTGCCCCACCCCCGTCTGTCAGCGCAAAGAGCTGGGCGGCAGCAGGGTGCCTGGGCGCTTGCCTGCCCAGAAATGCCAGGCGGATTCCATCATGCTTACAGTGGAGATGGATCCCAGCAAAGAACGAGGATCTAGTGTGGCAGTGAGAGACTATAGGAGAGAGAGCCAGCTTGGTGAGAGTAGAGGCACCTCAATGGGTAGCTATGCTCACCCTAAAGGACCCCAGGCAGGGCGTCAGAGGAGGACCGAGGCCAAAGCAAGAGCCCTCGGAGgggcagacagagggacagacattGGTCTGGTCCAGGGGGAGAGGGCCAGGAGGCCTGCATACCAGCCTAGGGAGCCCATACTGGACTACAGGAACTTGAGTGGGTCCCATGTTGGAGCTCAGAGGATTCAGAGGGGAGGGCCAGTTGCAGGTCAGAATAAGGACGATGGACTCATTGAGCTACTGGATATGCTGGACATCGAGCACGAGTACAACTCTAGTCCCCAAGCCACAAAGACTGCCTACAGAAAGGACACACAGAAGGTGAGCCCAGCTGAGTTGTCCCCAGCAACCCCGTCACTGAACTTCTCTCGTCCTGCCCGCCCAGCCAATCAACGCCCTCCATCCAGGTGGGCTAGCTGTGCTCCCACTGCCTTGATCTCTGCCCCCTCCGGTCCAATGTCCCGCGCCCCAAGCCCCTTGGCACACACCCCTAGCCCCATAGCAAGAACCCCAAGCCCCGCCCTAAAGCAGAAATCTTTCTGCTCCTATTTGCTCCACACCGAGACTGCCATCATGTGAGAGACACGTTCCCCGACCCCCTTTTAACcccaacccccccctcccccaatttAACCCCACGGGGTATTTCTCTGGAAATACTAAAGACTGTTCTTTCGATCCGTCTTGAAAAAAAGTGCTTTAAGAGATTTTCTATGAGATTACTTAGAATGACTTACACATATAAGAAACAAAATGGTTGACTCCTATTCAGTCTCCAGTGTTACTGTGGCCTTCCTTTCTCCTGTGCCAAACTTCTTTACTTTTTtgtttctttcactctcttttaCTTCCCTTCTAGTCTTTcgttttctctttcttttttattGATGATTTTTGGATGGCTGTGTATATTGCGATACAGCATGGCCCCCTTACTTGCGAgtgcgtgtccctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcaatcctAATGAGTGCCATGTCGGCTTGTTTTTAAAAGAGAGTTGGCCTTGTCCTGTCACCACAGCAGCAACATGCTAACTGTCTATAGTGTGTTTTACTGTGTCATATTATCAAAATAACACATTTGAAAATGTTCAAGTAACCATAGTAAGACATACAGTTATGACTATGTAATGCTTCTGCTGTCCTTTTTTCTCTCTTGATAATAAATAAACACGACAGTGCTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU786058 lncRNA upstream 25316 26360685 ~ 26360884 (+) True G690394
TU786050 lncRNA upstream 33897 26352029 ~ 26352303 (+) True G690386
TU786009 lncRNA upstream 37749 26325330 ~ 26348451 (+) True G690348
TU785968 lncRNA upstream 108703 26274652 ~ 26277497 (+) True G690308
TU785969 lncRNA upstream 125725 26259581 ~ 26260475 (+) True G690309
TU786102 lncRNA downstream 35570 26429117 ~ 26430939 (+) True G690428
TU786114 lncRNA downstream 55877 26449424 ~ 26449733 (+) True G690439
TU786119 lncRNA downstream 58841 26452388 ~ 26460132 (+) False G690443
TU786120 lncRNA downstream 58841 26452388 ~ 26458730 (+) False G690443
TU786121 lncRNA downstream 58841 26452388 ~ 26453435 (+) False G690443
XM_021612158.2 mRNA upstream 516 26381097 ~ 26385684 (+) False LOC110529706
XM_021612159.2 mRNA upstream 10024 26363177 ~ 26376176 (+) True LOC110529707
XM_021612156.2 mRNA upstream 114942 26266259 ~ 26271258 (+) False LOC110529705
XM_021612157.2 mRNA upstream 114942 26266265 ~ 26271258 (+) True LOC110529705
XM_036985184.1 mRNA upstream 213853 26133197 ~ 26172347 (+) False LOC110529702
XM_036985191.1 mRNA downstream 72631 26466178 ~ 26588364 (+) False LOC110529712
XM_021612170.2 mRNA downstream 72633 26466180 ~ 26590958 (+) False LOC110529712
XM_021612169.2 mRNA downstream 108948 26502495 ~ 26588364 (+) True LOC110529712
XM_021612176.2 mRNA downstream 220061 26613608 ~ 26734774 (+) True kcnh5a
XM_021612178.2 mRNA downstream 353577 26747124 ~ 26756366 (+) False ppm1ab
TU786082 other upstream 2774 26381128 ~ 26383426 (+) True LOC110529706
TU785811 other upstream 190656 26133191 ~ 26195544 (+) True LOC110529702
TU784988 other upstream 704473 25678652 ~ 25681727 (+) False LOC110529690
TU784318 other upstream 1324750 25058953 ~ 25061450 (+) True G688823
TU784088 other upstream 1401374 24982729 ~ 24984826 (+) True G688613
TU787679 other downstream 1162737 27556284 ~ 27557019 (+) True jag2b
TU788176 other downstream 1502154 27895701 ~ 27895987 (+) True G692343
TU788158 other downstream 1576929 27970476 ~ 27972016 (+) True xrcc3
TU788261 other downstream 1676353 28069900 ~ 28070228 (+) True G692424
TU789022 other downstream 2101738 28495285 ~ 28558373 (+) True btbd7

Expression Profile