RNA id: XM_021612165.2


Basic Information

Item Value
RNA id XM_021612165.2
length 4421
RNA type mRNA
GC content 0.48
exon number 17
gene id LOC110529710
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 26444117 ~ 26463361 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATTGTGACGTTTAATGTGATGTGATTAATTTACGTTTGTTCCTCAGGTGATTGTTCTAGCACCAGAGGGCGCTGTGCATTCGTAAACAGGAAAAGGTGGGAAATGCCATGGCATGCGGAAGTGGGAAGATTGTGGAAAGGGAGAAGAGCGGGATCATTAGGACGTTGTGCCCACAGGCTcggcgcgtgtgtgtgcgttggGGTGCATGCAGCTTTAGAATACCGCACtgatggagaagagagacaggaagcCGGGCTACTTTGCCAGGTTGAAGAGACGGAGACAGCTCAAACAGAGCCAATCAGAGAAGGCTATGGCTGAGCAGAACCCGTCGGATTCGTCCTTAAAGACGCCCGTCATCTCCTGCCCATCCCTCCCTGCTTTTTCTGATCCTCAGGAGAGGATAATACCAAACCCACCTGAAGGTTTAGATGACAGCAACAACATGAGCAGCCAGGccaagaaagagaagaggaggccCCCCGGGACAGTGGAGTATACTGTGGGACCCCAAGAATCTCTAAACAGCATTGCTCTGAAGTTCAATATCACCCCCAACAAATTGGTGCAGCTCAACCGCCTCTTTTCCCGCAGTGTCTATCCAGGACAGAAGCTATTTGTTCCTGACGTGGGCCAATCGGAAGCCGACTCTCAGTCTGTGGGTTCCTCTGACCCCACCTCCATCAAAGATCTAACAGAGAAGGTGTCACAGGATGGAGACTTCAGTGGCAGATCAGTAAGACCGCTACGACGTGAGCGGTCTTCCCTGTCCGAGGATGAGAACCCCGCCATTGTCAAGTTCATCAAGATGAGCTGCAAGTACTTCACTGACGGAATGGGTGTGGTGGGAGGGGTGATGATCGTGACGCCCAACAACATCATGTTTGACCCTCACAAGTCGGACCCCCTGGTGATTGAGCACGGCTGTGAGGAGTACGGCCTGATCTGCCcaatggaggaggtggtgtctgTGGCCCTCTACAACGACATCTCCCGCATGAAGCTGAAGGACGCGCTGCCGTCAGACCTACCCCAGGATCTGTGTCCTCTGTATAGGCCCGGAGAGTGGGAGGAGCTGCCCTCAGAGCGCGACCTCAACCCCTTCAGCCGCTACGAGGCGCTGGATCCCAAACGACCCATTGTCCTGGACGACATCGACTCTGCCCTGTCAGACACGGTCATAGAGAGGGCAGAGTGTGAGCCAGCAGACCAGTCTCCATCAGACGAGGGTTTCACAGAGCTGGAGCTTCCCTTGAACGGGAGCGCTGAGGAACCAATGAGTGGATCCAGGCCACCTGCCAGTGCTACCAGCCAGGACCAGCGGGGAGAGCTCCCAGGATCTAGTTCCCCTAAACGGGTGGAGTCCCAGTCCCTCTCTGACCCAGTCCCACTGACCtcgcagagaggagaggaagacgatGAAGGACTGGTCCAGAACCGCTCCATCGAGGAAACGACCCAATCACTGCCTGTCCTTTCAGAGACTGAGAATAACGGTGAACTGTTGAAGCCTGCTAGCCTAGCCACACGCCAAGCCAAAGACGGGAACTCTTCAGGGCAACTGGTGAACGGTGTTAGCGACCAATCAGAATCGGCAATGGACCAAAATAGGAAGCTGAGCTTGAGTGAGACCGCTGCGGCTTCAGGGAAATGTTGTTCTCAGGAACCCAGCCCTGCAGAGGAGTGGCTGAGTGAGGAAGAGAAGCGAAAGAGGAGCAACAAGGCGGAGGTGAAGTCTTGGCTGCTGGAGAGGATGCAGGCGCCCATCCAAAacatGCTGCTCTCCACAGAGGAGAAGAGTAAGACCCCGCCCATGTTCCTTTGCTTCAAGGTGGGCAAGCCCATGAGAAAGTCCTTCATCATTGGCCGGACATCCAGCCCCGCCCACACGCGAGGAAAACAGCCAGAGTACTGGTTTGCTGTGCCCcaggagagGGTGGACCACCTCTATGCATTCTTTGTccagtggtctcctgatgtgtaTGGTAAGGAGGCCAGGGAGCAGGGCTTCGTGGTCGTGGAGAAGGACGAGCTCAACATGATCGATAACTTCTTCAGTGACCCCAAGTCTTCTCGCAGCTGGGAGATCATCACCATCAACGAAGCGAAGCGCAGGCAGAGTTTTGGCAGCTATGATGGGGAGGAGCCTTTTGGGGATCTACTGCCCATGCTCAGTGACCCCAGTGCTCTGCTACAGGACACACACATAGAGAAGCTTGCTTGTCGGCTGCCAGCGCGGGTGCAGGGGTATCCATGGCGACTGGCTTACAGTACGGTGGAACACGGGACCAGCCTAAAGACCCTGTACAGGAGCCTATTAGAGGTGGACAGCCCTGTGCTACTGGTCATTAAAGACATGGACAACCAGTTGTTTGGGGGATACTCCACCCATCCCTTCAGAGTAAGTGAGCACTGCTATGGCACGGGAGAGACCTTCCTCTTCAGTTTCTGCCCTGAAATCAAGGTTTACCGCTGGACTGGGGAGAACTCCTACTTTGTGAAAGGCAACACAGATTCTCTtcagatgggaggaggaggAGGTCAGATAGGGCTGTGGCTGGATGCTGACCTGTATCATGGCACCACCTCCAGCTGTGCCACTTTCCACAACCAGCCCCTCTCTACTCAGAAGGACTTCATCATCCACAGTGTGGAGGTCTGGGCCTTCGAGTAGCCTCCCTCCACCTCATCCAGTCCCCTCCAAAACCCTCCAGGGGGGAGACCAGGATCTGGCTTCAACGCCCACCCCTTACTCTACCAGAATGGGAAGCTGATAATTTGACATGGTTTATGACATCTGATTTGATGTGGTTTGTCCTGAGGGTGGCAGAGGTGTGAGAAGCTGTGGCTGGTGAATTTCCCTATTACTCTATTGGCTGCCTTATACCTCCCATGCCACCCACAGCTATCCCAGCATGCAGCCTGCCTACAGAACTCAAAACTTCTACCCACTTGGAGAAGAGCGACATGTTCCTGGAGGATCGAAGAGGCAATTGTCCTAGCTAATGGAATCAGTCATGAGTTAATTTCAAACACAATATCAAAACATAGGCAATGAGATGTGAGATTGTTGTATTAGGGATGTGGCTAGTGGGTGCAATGCACATCAAAAAGGAACAAGGtatctggttacaggtgagtaAACACAACCATCAATTCTCTACAAACGCAGAAAATCGGAATATTCTTGTTGACAAGTCCATAACATGTCAGGGGAAAAAACATGTGAAAAGAGGAAAGGTGAAAGGTTAGATGTTTTAGGTAGGCATTTTGTGACTAATTTCTCTTCCAAAACACATCTGCCCCAAAACCACTTTAAATATAGGAGTAATTGTTTACAAAGAAGAGGCTTACCATGACTGAAGGTTCTTGTTTTCATGTCTCCAGTCCTAAATAGACTTAATGAGAATGTTACATTGCATTTCAGAGCATTCCATGTCTCTTTCCAAAACAACTGTCAACTAAGAAGGGAACATAAAGGGGGTTTTGCAATGACCAAATGTcgttttattttacttttgtatctgttttgtttgtttctcGTCACATTTTATAATTTTTCTTATGATTTATTTGTACAAAGAATGTATGATTTTTGAAATAGTATCATTTTGTTacagaattgtatttttttttggtgAATGTGTTGGTTTGTTTTCTGTTGTTTTTAGGTAAGTCCTGTAATCGGCCACAAGGTTGATACATCCAAGCACTAAATAGATTGAAGAATCTCAAGGCAGTATTAGTCTGTCACATCTTTGACCAACTGTACCTTCTCTTTGTTTTACGGTGTGTTTCTGTAAGTAGAGTGAGTTACTGCAGAGTGAGTTTAGTCTACTCAACTGTTCATTAGAACACATGAGCCAAGGGAAGTAAGACGGTTCAATAACTCCCAAGTTGATTGGTCTGGTCTGTGGCATTAACATCAGTCATTTGTTTGTGTATAAACCTGTCACGATTGTCATTTTCTGCCACTACATAAGGGAAGGACCGGTGAGTACTGAAATTCCGGGAAAGAAAGGGATATaccattttagttttttttcttaACGTGTTCTGTTGAGATCTTATACCACTGTTTTCCAGACCAATGTTGATAAATGGAGTGTTTTGTTTCTGTCTCAAGTAAGTTACCATGAGCTGACTAAACCTACTGCATGATATACAGAAAATACTGTAATACAGACAATACTGCTTAAATATGACATTCCCCTTTCTGCATCCTACTATTCACAAATCCTTATAGGTGTGGCTTTGTTTCTTTCTGTGTAATAGATGTTGAGTGTTGTTCTCACTGTGAATGTTCCCAAAGTGTTATTTCCTGTGAATCCAAAACTGTCATATTATAGGTGAGTATCACTGAGGATATTTATTGTATTGTTATGTTTAAAATGAAATAATAAACATAACATAATACGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU786475 lncRNA downstream 13274 26428702 ~ 26430843 (-) False cenpw
TU786477 lncRNA downstream 13274 26428795 ~ 26430843 (-) False cenpw
TU786476 lncRNA downstream 13274 26428864 ~ 26430843 (-) False cenpw
TU786532 lncRNA downstream 58391 26384583 ~ 26385726 (-) True G690801
TU786506 lncRNA downstream 82802 26361027 ~ 26361315 (-) True G690783
TU786758 lncRNA upstream 251856 26715217 ~ 26715507 (-) True G691008
TU786760 lncRNA upstream 256283 26719644 ~ 26719843 (-) True G691010
TU786790 lncRNA upstream 294779 26758140 ~ 26766768 (-) True G691038
TU786806 lncRNA upstream 331048 26794409 ~ 26794617 (-) True G691054
TU786808 lncRNA upstream 331476 26794837 ~ 26795095 (-) True G691056
XM_021612162.2 mRNA downstream 13229 26429040 ~ 26430888 (-) False cenpw
XM_021612161.2 mRNA downstream 18043 26422495 ~ 26426074 (-) True LOC110529708
XM_021612155.2 mRNA downstream 268478 26172446 ~ 26175639 (-) True LOC110529703
XM_036986843.1 mRNA downstream 321837 26120465 ~ 26122280 (-) True LOC110531082
XM_021612146.2 mRNA downstream 337316 26094941 ~ 26106801 (-) True LOC110529700
XM_036985194.1 mRNA upstream 128169 26591530 ~ 26596678 (-) False LOC110529713
XM_036985193.1 mRNA upstream 128169 26591530 ~ 26596738 (-) True LOC110529713
XM_021612175.2 mRNA upstream 135669 26599030 ~ 26602934 (-) True LOC110529714
XR_002474429.2 mRNA upstream 707577 27170938 ~ 27186859 (-) False LOC110529723
XR_002474430.2 mRNA upstream 707577 27170938 ~ 27186859 (-) True LOC110529723
TU786474 other downstream 13274 26429115 ~ 26430843 (-) True cenpw
TU785681 other downstream 452974 25990678 ~ 25991143 (-) True G690073
TU785641 other downstream 478624 25965179 ~ 25965493 (-) True G690033
TU785453 other downstream 638642 25801964 ~ 25805475 (-) False LOC110529694
TU787231 other upstream 400849 26864210 ~ 26868078 (-) True G691447
TU787547 other upstream 852207 27315568 ~ 27315935 (-) True G691747
TU788741 other upstream 1652375 28115736 ~ 28116048 (-) True G692859
TU789000 other upstream 2015456 28478817 ~ 28481898 (-) True si:dkey-85n7.8
TU789291 other upstream 2129980 28593341 ~ 28594431 (-) True G693383

Expression Profile