RNA id: XM_036985191.1


Basic Information

Item Value
RNA id XM_036985191.1
length 3487
RNA type mRNA
GC content 0.55
exon number 25
gene id LOC110529712
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 26466178 ~ 26590958 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCGGGACCTCTTTTTTAAAAATCCAATGGCTTTTGAGTAGGAGGCGAGGAGAATGCCTATGCAATTGAGATTATCCCAAAAATACTGAGTCTACCGGTAGCTTAATATTAAACAGTACATTGTTTGCTGGGAGTACTTGTGGATATCATCAGAAAAATGTGCACCCACACGAGGGCTCTCTAAAGGAGTTGAAACACTGAGGTAGCGGAGGCAGGTGTTGCAGAAAGAGCctcacccccttctccctccaaaCCTGAACCCTCTGCCGCAGCAGCGGTAGCCATGGCACCCCGGAAGCGTGGTGGTGGCGGTGGCGCCGGAATCTCCTTCATCTTCTGCTGCTTCCAGAGTGGCAGCGACCACCCAGAGATCACCTACCAGCTACGCGAGGACTTCGCCCTGCAGACCATGGAGCCTTCACTGCCCATGCCAGGCTATGATGAGCTGGACGGCATGTTCTCCGAGTTGGTGgatgAACTTGAcctcacagagaaacacagggaggCCATGTTCAACCTGCCTGCAGAGAAGAAATGGCAGATCTACTGTAGCAAGAAAAAGGAACAAGAGGAGAACAAAGGTGCAACCAGCTGGCCAGAGTATTACATTGACCAGCTCAATTCCATGGCTGCCAGGAAGACACTCCTTGCCCTGGagaaggaagatgaggaggagaggaacaaaaCGATAGAGAGCCTGAAGACTGCTTTGCGGACGCAACCCATGAGGTTTGTGACTAGGTTCATTGACCTAGATGGCCTGACCTGTATCCTCAACTTCCTGAAGACCATGGACTATGAGACGACCGAGTCGCAGATCCACACCTCGCTCATCGGCTGCATCAAGGCCCTGATGAACAACTCCCAGGGGCGCGCCCACGTGCTCTCGCACTCGGAAAGCATCAACATCATCGCCCAGAGTTTGGCCACCGAGAACGTCAAGACCAAGGTGGCGGTGCTGGAGATCATGGGCGCTGTGTGCCTTGTGCCTGGCGGGCATCGGAAGATCCTGGAGGCCATGCTGCACTACCAGCGCTTCGCCTGTGAGAGGACGCGCTTCCAGACCCTGCTGAACGATCTGGACCGGAGTACGGGTCGGTACCGGGATGAGGTCAACCTGAAGACAGCCATCATGTCCTTTATCAATGCTGTCCTCAGCCAAGGTGCCGGAGAGGCCAGTTTAGAGTTCCGCATCCACCTCCGTTACGAGTTCCTGATGCTCGGAATTCAGCCAGTCATTGATAAACTTCGCTCCCATGACAACTCCACATTAGACCGGCATTTGGATTACTTTGAAATGCTGCGCAATGAGGACGAGCTAACTATGTCGCGACGTTTTGAGTCGGTGCACATAGACACTAAAAGTGCTTCCCAGGTATTTGACCTCATCCGGAAGAAGATGAACCACACTGACGCGTACCCTCACTTTATCTCCGTCCTGCACCACTGTCTCCTCATGCCTCATAAAAGGAGTGGGAACACGGTGCAGTATTGGCTGCTGCTGGACCGCATCGTCCAGCAGATGGTCCTGCAGAACGACAAAGGCCACGACCCCGACGTCACGCCACTTGAGAACTTCAATGTTAAGAACGTGGTGCGGATGCTGGTCAATGAAAATGAGGTCAAGCAGTGGAAAGAGCAGGCGGAGAAAATGCGAAAAGAGCACCACGAGCTCCAGCAGAAGTTTGAGAAGAAGGAGCGCGAGTGTGACGCCAAGACCCAGGAGAAGGAGGACATGATGCAGACCCTCAACAAGATGAAGGAGAAGCTAGAGAAGGAGAGCACCGAGCACAAGGCAGTCAAGCAGCAAGTGGCtgacctctctctccagctccacgACCTCAGCTCTAGACCGATCGCCAGTGTCCCAGGCGGTCCCCCCTTCATCCCTGGCCCCCCTGGTGGGCCTctcccacccccccctccccaaggAGGCATAATGCTccctcccccaccacccccaGGGGGTATGAtgccccctccaccacccccacctccaGGTGGTCCCCCGCCTCCTTTTGGACGGCCACCCATGGGAGGGATACCTCCTCCCCCTGGGGCACCCCTGGGGTCCACTCTCAAGAAGAAGAACATCCCCCAGCCGTCCAACCCACTCAAATCTTTCAACTGGGCCAAGCTGGCTGAGAATAAGTTGGAGGGCACTGTATGGACAGAAGTGGACGACGGGAAGGTTTTCAAAATCCTCGACCTGGAGGACATTGAGAAGACCTTCTCGGCCTACCAGAGGCAACAGaaagagagtgaggattCGGACTCCTTGAGCTCCAAGAAGGTCAAGGAGCTCTCGGTCATCGATGGCCGCCGAGCCCagaactgtaatatcctcctGTTGCGGCTGAAGCTGTCCAATGAGGAGATGAAGAGGGCTATCTTGACCATGGACGAACAGGAGGACCTCCCCAAGGACATGCTGGAGCAGATGCTGAAGTTTATTCCAGAGAAGAGTGATGTGGACCTCCTGGAGGAGCACAAGCATGAGTTGGACCGCATGGCCAAGGCTGATCGCTTCCTTTATGAGATGAGCAGGATAAACCACTACCAACAGAAGCTACAGTCGCTGTACTTCAAAAAGAAGTTTGCAGAGACGATTGCAGGGATCAAACCCAAAGTAGaagCTCTGATCAAGGCCTCCAAAGAGGTGCTGCACAGCCGCAATCTGAAGCAGCTGCTGGAGGTGGTGCTGGCCTTTGGGAACTACATGAACAAAGGCCAGAGGGGCAATGCCTATGGCTTCAAAGTGTCCTCGCTCAACAAGATCGCAGACACAAAGTCGAGCATAGACAAGAACATCACCCTCCTCCACTACCTGATCACCATCCTGGAGAAGAAGTACCCCAAAGTCCTAATGTTCCAGGAGGACCTGCAGAGTGTGCCGGAAGCCGCTAAAGTCAAcatGACTGAGCTGGAAAAGGAAATCAATCATTTGCGCAGTGGCTTGAAAAACGTTGAGAGTGAGTTAGAGTTCCAGAAGAAGCGGCCCCAGGAGGTGGGCGATAAGTTTGTGTCAGTGGTGAGCCAGTTCATCACTGTGGCCAGCTTCAGCTTCTCAGATGTGGAGGATTCTCTCACCGAGGCCAAAgagctgTTCCTGAGGGCGGTGAAGCATTTTGGTGAAGATGCTGGGAAGATGCAGCCGGATGAGTTCTTTGGCATCTTCGACCAGTTTCTGGGGTCGTTTGCCGAGGCGCGTCAGGAAAATGAGAATATGCGCCGGCGCAAGGATGAGGAGGAGCGCAGGGCAAAAATGGAAACTCAGctgaaggagcagagagagaaggagcggaaGGCACGGAAAGCGAAGGCCAGCGGCGAGGACGACGGCGGAGAGTTTGACGACCTGGTGTCGGCACTGCGCTCCGGCGAGGTCTTCGACAAGGACCTGTCCAAGATGAAACGCAACCGCAAGCGCATCAACAGCCAGCCAGATACTGGCAGGGAGCGGCCAGTCACCAAGCTCAACTTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU786117 lncRNA upstream 3286 26462655 ~ 26462892 (+) True G690442
TU786119 lncRNA upstream 6046 26452388 ~ 26460132 (+) False G690443
TU786118 lncRNA upstream 6046 26458333 ~ 26460132 (+) True G690443
TU786120 lncRNA upstream 7448 26452388 ~ 26458730 (+) False G690443
TU786121 lncRNA upstream 12743 26452388 ~ 26453435 (+) False G690443
TU786215 lncRNA downstream 6699 26595063 ~ 26650001 (+) True G690530
TU786293 lncRNA downstream 101280 26689644 ~ 26689879 (+) True G690606
TU786306 lncRNA downstream 113412 26701776 ~ 26702014 (+) True G690619
TU786314 lncRNA downstream 121846 26710210 ~ 26710417 (+) True G690627
TU786226 lncRNA downstream 163600 26751964 ~ 26758023 (+) True ppm1ab
XM_036985188.1 mRNA upstream 72631 26386200 ~ 26393547 (+) False LOC110529706
XM_036985189.1 mRNA upstream 72631 26386200 ~ 26393547 (+) False LOC110529706
XM_036985190.1 mRNA upstream 72631 26386202 ~ 26393547 (+) False LOC110529706
XM_036985187.1 mRNA upstream 76299 26381097 ~ 26389879 (+) False LOC110529706
XR_005052848.1 mRNA upstream 76299 26381097 ~ 26389879 (+) False LOC110529706
XM_021612176.2 mRNA downstream 25244 26613608 ~ 26734774 (+) True kcnh5a
XM_021612178.2 mRNA downstream 158760 26747124 ~ 26756366 (+) False ppm1ab
XM_021612177.2 mRNA downstream 158760 26747124 ~ 26757042 (+) False ppm1ab
XM_036985196.1 mRNA downstream 211226 26799590 ~ 26835405 (+) False LOC110529717
XM_036985197.1 mRNA downstream 211232 26799596 ~ 26835405 (+) False LOC110529717
TU786082 other upstream 82752 26381128 ~ 26383426 (+) True LOC110529706
TU785811 other upstream 270634 26133191 ~ 26195544 (+) True LOC110529702
TU784988 other upstream 784451 25678652 ~ 25681727 (+) False LOC110529690
TU784318 other upstream 1404728 25058953 ~ 25061450 (+) True G688823
TU784088 other upstream 1481352 24982729 ~ 24984826 (+) True G688613
TU787679 other downstream 967920 27556284 ~ 27557019 (+) True jag2b
TU788176 other downstream 1307337 27895701 ~ 27895987 (+) True G692343
TU788158 other downstream 1382112 27970476 ~ 27972016 (+) True xrcc3
TU788261 other downstream 1481536 28069900 ~ 28070228 (+) True G692424
TU789022 other downstream 1906921 28495285 ~ 28558373 (+) True btbd7

Expression Profile