RNA id: TU786226


Basic Information

Item Value
RNA id TU786226
length 2153
lncRNA type sense_over
GC content 0.38
exon number 3
gene id ppm1ab
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 26747124 ~ 26758023 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTGGTGACTTTGACTATAAATGTGTACATGGCAAGGGCCCCACAGAGCAGCTTGTGTCGCCTGAGCCAGAGGTGTATGAGATTGAAAGATCTGAGGCGGAGGACGAGTTTGTGGTTTTGGCGTGTGATGGCATCTGGGACGTGATGGCCAATGAGGAGCTATGTGACTTTGTGCGTTTACGTCTAGAGGTGACAGAGGACTTGGAGAGAGTGTGCAATGAGATTGTTGACACATGTTTATACAAGCCGGGACAACATGAGTGTGGTGCTGGTGTGTTTCCCAGGTGCTCCCAAGATCTCGCAAGAAGCTGTGAAGAGACAGGCAGAGCTGGATAAGTACCTGCAGAGCAGGGTAGAAGCTTTTCCAATGAAGCAAGCTCAATATTGTATCTTCTGGACCCGGTTTTTCAAAACATTTAATCTTGATCAGAATGATACGGATTCTGTAATCCCTTATTTTGCATACCAGGATCATATAAATCCAACAGATTTTTTTGGCCAGTGTTTCTGAAATAGGTAGGAAAGGACCATTCTGATCTACATATGAAAATGTTAAGAATCTAGATTACCTGTGCTTTGAATATGTGTAAACCATGCCATCTACTGGGCAGGTTATATTACTACATACATGAAGAAAGGTtcacttttaattttttttttttttaaccaaatctGTGTTTTGGATGTACGTTAATGTTAAAAAAGCGCTGAGACACTATAAAATAAAATTAATTAATTTGGTTTTGAGAAACATGTCCCACCAGTGATTATACTTCCTCATGTTTGTTCAGCAGTTGTAGGGGCATGATAAAACATGaacaaaggctccaaaaacacccaaatacgtCCTTTTAAAAGTGACGCcgtatagtgatgcaggtctttagatgttaTACACATGCAATTGTGTCATTCCGAAATTTATCCGCAACGTTATATTCCATGTTGTGTGACTCGAGCTGTACTTTTCCGCGTGCGCATGTGCGGGCTACACAGAGAAGTATCGCTGGAGAATGTAATGTTGCGCATAGTCACTTTACTGCTTtaatcagctttaatattgcagatatatTGTGGTTTCTagcaatgtaattgtctgcataatttccaatcccccatatatattttttgtaaatatatatagtaccagtcaaaagtttggacacacttactcattcaagggtttttcttttttttgtgctattttctacattgtagagtaatagtgaagacatcaaaactaatgaaataacacatggaatcatgtacgaaccaaaaaagtgttaaacgattcaaaatatattttatattcttcgaagtagccaccctttgccttgatgacagctttgcacactcttggcattctctcaaccaacttcataaggtagtcacctcgaatgcatttcaattaacaggtgtgccttgttcatttgtggaatttatttccttcttaatgcgattgagccagtcagttgtgttgtgacaaggtaggggtggtgtacagaagatagcccaatttggtaaaataccatattatggtaagaacagctcaaataagcaaagagaaaggacTATTGACTCTGACTTTTCAaacacccagcagtgctatttgcagagttggCTCCAATTAAATGTTGCAATTGTTCTGCCATTCCAGACCCTGCAACCAAAAACAAGCTCCATGtgggcagtaccaaaacaagtaATCTAATGATTATGAATgactcttcgcagcaaaatctgcagagctgcgaTTTGTGTATCCCCCAtacatataacattctattggttgcaaaattgttgtataataatttacattgaaaaacaatgtttttaatCTGGTGtcattttgtgtatcagttcatagaCCACGTGCCATAGAATCGGTACATAGAAAATCTCCTCCAAGCTATTTTGAAACCTGTATGGCGCAGCTGTCCATTTTTTTGTCCATAAATGAAACTGATACACGCTTTTATTTATCAGAATTTTCTTTAGAccattttggtctttaatgcaggacTGACAGACAAGTTTTGTACCTTCTCCCCTTTACAacatttttggggtaatgctgcaatcagttgtttgtaattttggatagagcagacatTTACATATATTGTTTGTTAACTGCATGTGTGACAACTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU786314 lncRNA upstream 41547 26710210 ~ 26710417 (+) True G690627
TU786306 lncRNA upstream 49950 26701776 ~ 26702014 (+) True G690619
TU786293 lncRNA upstream 62085 26689644 ~ 26689879 (+) True G690606
TU786215 lncRNA upstream 101963 26595063 ~ 26650001 (+) True G690530
TU786117 lncRNA upstream 289072 26462655 ~ 26462892 (+) True G690442
TU786870 lncRNA downstream 130565 26888588 ~ 26888904 (+) True G691111
TU786859 lncRNA downstream 131807 26889830 ~ 26891532 (+) False atp5mpl
TU786858 lncRNA downstream 131831 26889854 ~ 26891532 (+) False atp5mpl
TU786860 lncRNA downstream 131831 26889854 ~ 26891532 (+) True atp5mpl
TU786872 lncRNA downstream 137427 26895450 ~ 26895702 (+) True G691113
XM_021612176.2 mRNA upstream 17190 26613608 ~ 26734774 (+) True kcnh5a
XM_021612170.2 mRNA upstream 161006 26466180 ~ 26590958 (+) False LOC110529712
XM_036985191.1 mRNA upstream 163600 26466178 ~ 26588364 (+) False LOC110529712
XM_021612169.2 mRNA upstream 163600 26502495 ~ 26588364 (+) True LOC110529712
XM_036985188.1 mRNA upstream 358417 26386200 ~ 26393547 (+) False LOC110529706
XM_036985196.1 mRNA downstream 41567 26799590 ~ 26835405 (+) False LOC110529717
XM_036985197.1 mRNA downstream 41573 26799596 ~ 26835405 (+) False LOC110529717
XM_036985195.1 mRNA downstream 41574 26799597 ~ 26835405 (+) True LOC110529717
XM_036985198.1 mRNA downstream 87657 26845680 ~ 26868116 (+) False si:ch211-212g7.6
XM_021612180.2 mRNA downstream 87658 26845681 ~ 26868116 (+) True si:ch211-212g7.6
TU786082 other upstream 368538 26381128 ~ 26383426 (+) True LOC110529706
TU785811 other upstream 556420 26133191 ~ 26195544 (+) True LOC110529702
TU784988 other upstream 1070237 25678652 ~ 25681727 (+) False LOC110529690
TU784318 other upstream 1690514 25058953 ~ 25061450 (+) True G688823
TU784088 other upstream 1767138 24982729 ~ 24984826 (+) True G688613
TU787679 other downstream 798261 27556284 ~ 27557019 (+) True jag2b
TU788176 other downstream 1137678 27895701 ~ 27895987 (+) True G692343
TU788158 other downstream 1212453 27970476 ~ 27972016 (+) True xrcc3
TU788261 other downstream 1311877 28069900 ~ 28070228 (+) True G692424
TU789022 other downstream 1737262 28495285 ~ 28558373 (+) True btbd7

Expression Profile