RNA id: XM_021612181.2



Basic Information


Item Value
RNA id XM_021612181.2
length 443
RNA type mRNA
GC content 0.45
exon number 4
gene id atp5mpl
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 26889795 ~ 26891532 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATCTGTATGTGCATTCTACTATTTCTCTGTTTGCTGCAAAAGAAGAAAACTGATATCCCAGCACGCTCTGCGACACACCATACATTGTTTTCGTTGGAAAGTGACCTTCTTCGCACTGGGCATCACATACTGAAGATGGCAGGGCGTGTATTTTCAAGCTGGTGGGCCAAGATGAGCCCTTACTACACTGGGGCGTACCAGGAGATGTGGGTCGGCCTGGGTGTCATGACATACCTGTACTACAAAGTCTCTTATGGGGGAAAGAAAGCAGTTAAAGGAAaGCCTGCACATTGATTTCATCACTATGCTGAGCGGTCACCCCCTTTCCCCATGTGAAATAGCACCCCATGTGAAGCAGCTCAATTTACACCATAATGTCTGTCCATATTGTCTGTTTCTTTGGAACAATAAAATGGTCTACTGAGATCACTAGAAGGATGATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU786870 lncRNA upstream 891 26888588 ~ 26888904 (+) True G691111
TU786226 lncRNA upstream 131772 26751964 ~ 26758023 (+) True ppm1ab
TU786314 lncRNA upstream 179378 26710210 ~ 26710417 (+) True G690627
TU786306 lncRNA upstream 187781 26701776 ~ 26702014 (+) True G690619
TU786293 lncRNA upstream 199916 26689644 ~ 26689879 (+) True G690606
TU786872 lncRNA downstream 3918 26895450 ~ 26895702 (+) True G691113
TU786875 lncRNA downstream 6088 26897620 ~ 26897850 (+) True G691116
TU786878 lncRNA downstream 11093 26902625 ~ 26902882 (+) True G691119
TU786881 lncRNA downstream 17549 26909081 ~ 26909481 (+) True G691122
TU787057 lncRNA downstream 395956 27287488 ~ 27287996 (+) True G691278
XM_036985198.1 mRNA upstream 21679 26845680 ~ 26868116 (+) False si:ch211-212g7.6
XM_021612180.2 mRNA upstream 21679 26845681 ~ 26868116 (+) True si:ch211-212g7.6
XM_036985196.1 mRNA upstream 54390 26799590 ~ 26835405 (+) False LOC110529717
XM_036985197.1 mRNA upstream 54390 26799596 ~ 26835405 (+) False LOC110529717
XM_036985195.1 mRNA upstream 54390 26799597 ~ 26835405 (+) True LOC110529717
XM_021612188.2 mRNA downstream 25137 26916669 ~ 26997843 (+) False ppp1r13bb
XM_021612187.2 mRNA downstream 25138 26916670 ~ 26997843 (+) False ppp1r13bb
XM_036985199.1 mRNA downstream 25138 26916670 ~ 26997843 (+) False ppp1r13bb
XM_036985201.1 mRNA downstream 25142 26916674 ~ 26997843 (+) False ppp1r13bb
XM_021612189.2 mRNA downstream 65873 26957405 ~ 26997843 (+) True ppp1r13bb
TU786082 other upstream 506369 26381128 ~ 26383426 (+) True LOC110529706
TU785811 other upstream 694251 26133191 ~ 26195544 (+) True LOC110529702
TU784988 other upstream 1208068 25678652 ~ 25681727 (+) False LOC110529690
TU784318 other upstream 1828345 25058953 ~ 25061450 (+) True G688823
TU784088 other upstream 1904969 24982729 ~ 24984826 (+) True G688613
TU787679 other downstream 664752 27556284 ~ 27557019 (+) True jag2b
TU788176 other downstream 1004169 27895701 ~ 27895987 (+) True G692343
TU788158 other downstream 1078944 27970476 ~ 27972016 (+) True xrcc3
TU788261 other downstream 1178368 28069900 ~ 28070228 (+) True G692424
TU789022 other downstream 1603753 28495285 ~ 28558373 (+) True btbd7

Expression Profile