RNA id: XM_036985216.1


Basic Information

Item Value
RNA id XM_036985216.1
length 3716
RNA type mRNA
GC content 0.47
exon number 4
gene id btbd6b
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 27909705 ~ 27914563 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGGGTTTCCCACGACTGGAAATGTTGCTGAATCGAACGCTATAGTTGGCATCACTTCGACTGTACAGCCTGTGCGATTAGGGGAAGACATTTCAGCAGATATTTTCTGTGTAGCCTACTTCGTCTTCTTAAAAATGCACCGTTTCGAGAGCAACATTTTGGGCTCATATAACTTGAAATTGTGTACATTGTGTCTAACTGAAAGACTGGCGATTGCATCTCACAATTGTATCCAAATATTTCAATATAATTTACATAATTGTGCAAGCACTTCGCTTCATTTGTTACATGGAACGCAATTAAAAACGGCGTCCGTTTGGCGAGCCATGTCCCGCACTGTCAGCAAATTAATTGTTTCTCAAGTAGGCTTTTGCACCTTGAATATGCTATAGCTCGATATGCTCTATAAAACACACATGATATATATGTCTGTTCAATCCAGTTTTCGTGGAGCGTGTTTTGGTTCATAATTCGTAGTTTAAGTAACTTTGTGCAGTAAACTATTCATGTGGCGTACAAACCAGATGGATTTCATAGTAggctacaatgtagaatatatcATACGCTATCTATGAACCAAAATCACAAACGGGGCCTCTTCTGATATAAATATGCCTGAAATGAACCATATTGCTCCCATTTATGTGGGCAATTTAAGTAGTGACGAGAACGTTACGGTAAGGGTTAACTCTCTTGCTCGGATCTTCGCCATGTAATATTGTACAGATCAACTGTGGGAGGCGCATGCGGAATACTGACGTGCAAAGGCATCAGGGAATCTGATTTGTCAAACTCGAACTGGGCGCCCGCCCTCGATACACaaaactacagtacatacagtcatAAGAGTAGAATGATTGTTGGCACAGGGATGGATCACGTACCATTTGGATAATGATTTGAACTCGCGTCCGCCTGGATATCTAATAATTGTGACAACATCGTCGCCGCAGTGGAGTTATGCAACATTGTAACAATTTGCAACAGTTCGCCCTTTGTGCAACGTGGATGTGATTATTTTAGAGGGGATACATTGTCGCTTAAAAGGAGGACGCTATGAGAGATTAAATTGTAACCGCTTCGGATGTAATTCCGCTGGACTGACACCTTGATGTTGCTGTGCAAATATTTTCAGGGTGCGTAGGGGTTTTGTTTGATTGTACATAGACCTACGACCGATGACAGAGGGTATCGGTTTATAAACGTGTTACATTATgtggaattattttttttaaatctgaactGTTATACATTACTTATTTGCACTTTAAATGCACGTCGCCTTGTCCAAAGGTTGATAGGTGGATTTGTTTTCTGATGCCAGAACCCCCAGATTGCCTGTATGGCCGAATCATgaagttttttacatttttgctttTGCTTCCAGAAACTTTAAAAAGGACTAAAAAGAGTGGGAAGCAGTCCGGCAAGCTGCCAGTATGCTATGAAATCGTGACTTTGTCCGTGAAGAAGAAGATGGCTGCAGAACTGTACCCTGCCAGTTTAAACACCAACCTCCCTAACAGCAACGGCGCGGTAGTGACTGCAGCCAGCAAGAAAAACATCGTTCAGGTCACCCAAGCTGTGACCGTGCCGACTACGACTGCCACTCAGCaaaatatcaacaacaacaacgtcGAGACTACCAGTTGGCAGTCCACTCACCCGACATTGCGAGAAAGGAATGCCTTGATGTTCAATAAAGAACATATGGCCGATGTTCATTTCATTGTGGGTCCCCCTGGTGAATCACAGAAAGTTCCAGCGCATAAAtatgttttGGCTGTGGGCAGCTCTGTTTTTGGTGCCATGTTTTATGGAGACCTGGCAGAAGGGGAGTCTGAGATTCACATCCCAGACGTGGAGCCTGCTGCTTTTTTAATTCTGTTAAAgtATATGTACAGCGACGAGATTGAACTGGAGGCGGACACGGTGCTGGCCACTCTGTACGCCGCCAAGAAGTACATTGTGCCTGCCTTGGCCAAGGCCTGCGTCACTTTCCTGGAGACCAGCCTGGAGGCCAAGAACGCCTGTGTGCTGCTCTCTCAGAGCCGCCTCTTTGAGGAGCCAGAGCTGACACAGCGCTGCTGGGAGGTGATCGACGCCCAGGCTGAGCTAGCCCTCCGCTCCGAGGGCTTCTGTGAGATCGACCTGCAAACCCTGGAGATCATCCTGCGCCGTGAGACGCTGAACACGCGTGAGGCAGTGGTCTTCCAGGCAGTGCTGGAGTGGGCGGTGGCTGAGTGCCGGCGCCAGTGCCTGGGTGCCACGGCACGGAACAAGCGAGCGGTGCTGGGCAAGGTACTGTACCTGGTGCGCCTCCCCACCATGACTCTGGAGGAGTTTGCTGACGGCGCGGCACAGTCGGACGTGCTCACCCTGGAGGAGACGCACGACATCTTCCTGTGGTACACGGCGGCCAACAAGCCCAAGCTGGAGTTCCCGCTGGCTCAGCGGACAGGCCTGACGCCGCAGCGGTGCCATCGCTTCCAGTCATCGGCCTACCGGAGCAACCAGTGGCGATACCGGGGCCGCTGCGACAGCATCCAGTTTGCCGTAGACAAGCGTATCTTCATTGCCGGCCTGGGCCTGTATGGCTCGAGCGGCGGCAAGGCTGAGTACAGTGTCAAGATTGAACTGAAGCGGCAGGGTGCCACACTGGCGCAGAACCTCACCATGTTCGTGTCGGACGGCTCCAGCAGCACATTCTCAGTGTGGTTCGAGCACCCGGTTCAAGTGGAACAGGACACCTTCTACACGGTCAGCGTCGTGCTGGACGGCAACGAGCTGAGCTACTTTGGGCAGGAGGGCATGACTGAGGTGCAGTGTGGAAAAGTGACATTCCAGTACCAGTGCTCCTCGGACAGTACCAATGGGACGGGCGTGCAGGGGGGGCAGATCCCCGAACTGGTCTTCTATGCATGAACCCTAGGGTTGGTTTGTAACACATCCCCTCCCCTGCGTGGAAGTGCATTCTACCACTGGATTCGTTGAACATGCTGGGGATTATTAGAGGGTCCAAAAGCAAAAGAGTTCCTTTGCCTTCTTCAACAATGTAGCAGCAGTGAGAAATTATGTAAATGAAAACATGCCTGTTAGTCCTTTGACAAAATGTTTGAGTGATGGAATGCTCTTTAAATTTTTATTTATTGAGATAAAGATAAAACCTATGATTTTAACTATTGAGCGCTGTGGCATGCAGCCTGGTGTAAATATTACAGAGAAGTTGTATTATTGCACTCCTACTGGGCCACTCCCTGTTAGCGTGTTGTTTTTTGTAAATAACTTGAGGCTAATTTGTTTACAGCTTGAGGTTGGCTGACAAATGACATGTCTTGTATTTAGTGCGCAGCTTAATGGAACTGCAGAACATAAAGAAAACGTTTTTGTGACTCAAACTCAAAGGTGTTGATACTTGTTCTTTGGTAACACGCCCTGAGATTACATGACAGAGTATACTGTTAGACGATGAGAGAATTAGGGGTCACCAGGGAACCATTTTCTTACATAACATCTCCACCTCTTCCAATAGCAAAATGATGCATACCATGTAGTCTGGAGTTTGAAATACTCAGTCATGTATTTTTTGACACAAAATGAGGCGTAATGGAATTATGACTCTTTATTATGCTGCAGCAAACTCAATTTCGAATAGGCCGACAACCTCATATAGTGAAATGTTAAAGAACTAACAGTAAAATCATGTTTCGGCTTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU788182 lncRNA upstream 8245 27901486 ~ 27901686 (+) True G692349
TU788180 lncRNA upstream 11857 27897853 ~ 27898074 (+) True G692347
TU788179 lncRNA upstream 12296 27897385 ~ 27897635 (+) True G692346
TU788178 lncRNA upstream 12586 27896896 ~ 27897345 (+) True G692345
TU788174 lncRNA upstream 21087 27888526 ~ 27888844 (+) True G692341
TU788192 lncRNA downstream 5460 27920023 ~ 27920427 (+) True G692359
TU788194 lncRNA downstream 7492 27922055 ~ 27922402 (+) True G692361
TU788196 lncRNA downstream 9733 27924296 ~ 27924496 (+) True G692363
TU788197 lncRNA downstream 10223 27924786 ~ 27925014 (+) True G692364
TU788200 lncRNA downstream 14703 27929266 ~ 27929472 (+) True G692367
XM_021612192.2 mRNA upstream 307767 27498161 ~ 27602164 (+) False jag2b
XM_021612194.2 mRNA upstream 307767 27498161 ~ 27602164 (+) False jag2b
XM_036985210.1 mRNA upstream 426244 27391717 ~ 27483687 (+) True nudt14
XM_036985209.1 mRNA upstream 665753 27011159 ~ 27244178 (+) False LOC110529722
XM_036985211.1 mRNA downstream 16938 27931501 ~ 27948051 (+) False LOC110529728
XM_036985212.1 mRNA downstream 16942 27931505 ~ 27942656 (+) False LOC110529728
XM_021612196.2 mRNA downstream 16943 27931506 ~ 27941756 (+) False LOC110529728
XM_036985220.1 mRNA downstream 37072 27951635 ~ 27970830 (+) False xrcc3
XM_036985219.1 mRNA downstream 37115 27951678 ~ 27970830 (+) False xrcc3
TU788176 other upstream 13944 27895701 ~ 27895987 (+) True G692343
TU787679 other upstream 352912 27556284 ~ 27557019 (+) True jag2b
TU786082 other upstream 1526505 26381128 ~ 26383426 (+) True LOC110529706
TU785811 other upstream 1714387 26133191 ~ 26195544 (+) True LOC110529702
TU784988 other upstream 2228204 25678652 ~ 25681727 (+) False LOC110529690
TU788158 other downstream 55913 27970476 ~ 27972016 (+) True xrcc3
TU788261 other downstream 155337 28069900 ~ 28070228 (+) True G692424
TU789022 other downstream 580722 28495285 ~ 28558373 (+) True btbd7
TU789102 other downstream 790287 28704850 ~ 28705752 (+) True G693207
TU789468 other downstream 1016197 28930760 ~ 28938273 (+) False cdca4

Expression Profile