RNA id: XM_021612230.2


Basic Information

Item Value
RNA id XM_021612230.2
length 5469
RNA type mRNA
GC content 0.48
exon number 21
gene id LOC110529750
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 28822703 ~ 28844827 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAGAGAAGATCCCGATATGTGTCAGAAGGCGTTTCGACTGTCGTGGACGAATCTGTCTACTGTACAAGCAAGAAACGTGTGTGTGCACACCCGATTGGATGACATGTCCTCTATCATCAACGATTGGTCAATGTCAGTCATCGTGGTCTAGGATTGGTCTATCGGAGGGATTAGGAAGTGGTGTTCAAGGGTCAGGGGTTGCTAGCTGTTGTCTTAAACTGCGAACGATATTAGCTAAGTACAGCTGATCGTTGCTATTTATTAACAAGCTTCAAAGACCAGGAACACGTACATATAACTAGCTGAAGAAATATTCATTTCAAAGCATAGTGAAGCCTACCGGCGTTAACGTTATAGCTTTTGTTTAGCTAGCATGTTAACTTTAGCTGTTAGAaagcattatatatattttttttaagctgCACCTTCATttcaattattatttattttgtggGCTTTATCCTCATTTCGTTGGCTTTGTCCTAATGAATGTTAGTTAGCAGCGTATGCACGAGAAGAATACTCCTGTAATTTAATGTTTAACATTAGCCACGGAGCTAATTTGGTTAATTAGCTGGCTAGCAATCGTTAGCTTGTTGTCGAAAGGGTCATTAAATACTACGAGGATGATTTTGCCTATGGTGATTCTCCTAATAGTTTTCTCACACGGAACAACAGCTgATGAAGAGCCAGAAGGGAATAATGATCATGCTCCTGAATTGAAGTCTTACCATGAGCCCAACTCTGAGGAGGATGAGGTCCCAGTAGGTGCCAGGATTGTAGCAGGAATGGTGACTGCCCCCAGGGAGGCCGAGGGGGAGAGAAGACTCGATGGTGGGGTCCAGGAAGGTGGGGTCCAGGAAGGTGGGctggagggggaagagaaggaggactTGCCCACTCAACCTCCTCCCGTCGAGGAAAGGCCTAAAGAGGTTCCTGTGGTGAATGGCGGCACAGCCAATGGTAagccctgtctcttccccttcctcttcctGGGGAAGGAGTATGTGGACTGTACCACCGATGGCCGGGGGGACGACCGCCTGTGGTGCGCCACCACCTACGACTATGACAGGGACAAGAGATGGGGCTTCTGTGAGACGGAAGAGCAGGTGGAGCAGAGGCATCTAGCGGAGGAGACCGAAAAGGAGTACCAGACAGCCCTCCGCATGATCAACGGAACCAACCGGAAGAGCCAGAAGAAAGAGTTGTATGAGAAGCTATTGAAGGTTGCCGGCAAGGGCCACCACAAGGCCATGGAGAAGGTGGCCTACGCCATGCTGTTTGGGGACTACTTGGCCCAGAACATCCCTAAGGCCAAGGAGCTGTTTGAGAAACTGGCCCTGGAGGGCTCCCCCAAAGCTCAGATGGCACTTGGCTTCTTGTACGCTGCTGGGTTAGGCGTGAACTCCAGTCAAGCAAAGGCATTGGTTTACTATACCTTTGGGGCTTTGGGCGGAAACCTGGTGGCTCATATGATTCTGGGATACCGATACTGGggtggtgtgggcgtaccccagaGCTGCGAATCAGCACTGACGCACTACAGACTGGTGGCCAATCACGTGGCCAGTGACGTGTCCCTGACTGGGGGCAGTGCGGTGCAGAGGGTGCGTCTGCTGGACGAGGTGGAGAACCCGGGCTCTACCAGCGGCATGCTGGAGGAAGACCTGATCCAATACTACCAGTTCCTGGCTGAGAAGGGAGATGTCCAGGCCCAGGTGGGACTGGGCCAGCTGCATCTGCACGGTGGTCGGGGGGTGGAGCAGAACCACCAGCGGGCCTACGATTACTTCAACCAGGCCGCCAATGCTGGGAACACGCATGCCATGGCCTTCCTTGGGAAGATGTACTCGGAGGGCAGTGAGTACTTGTCTCAGAACAATGAGACGGCCCTGCAGTACTTCAAGAAGGCCTCTGACCTGGGTAACCCTGTTGGGCAGAGTGGGCTGGGCATGGCGTACCTGTACGGGAGAGGTGTGCCAGTGAATTACGAGTTGGCACTGAAGTACTTCCAGAAAGCAGCAGAGCAGGGCTGGGTGGATGGACAGCTTCAGCTGGGCACCATGTactacaatGGCATCGGGGTGAAGCGTGACTACAAGCAGGCCTTCAAGTTCTTCAATCTGGCCTCACAGGCAGGGCACATTCTGGCATTCTACAACCTGGCCCAGATGCACGCCACAGGCACCGGCGTGCTGCGTTCCTGCCACACCGCCGTGGAGCTCTTCAAGAATGTGTGTGAGCGTGGGCGCTGGTCGGACAGGCTGATGGCAGCCTACGGCAACTTCAAGGACGGCGACATGGACGGGGCGCTGGTGCAGTACCTGCTGCTGGCCGAGCAGGGCTACGAAGTGGCGCAGAGCAACGTGGCCTTCATCCTGGACCAGAAGGAGGCGCAGATCTTCAATGAGAACGAGACATACCCTCGAGCCCTCCTCCATTGGACCAGAGCAGCAGCACAGGGTTATACAGTGGCTAGGATAAAGCTGGGGGACTACCACTTCTATGGTTATGGTACTGACGTGGACTACGAGACCGCTGTCATCCACTATAGGCTGGCCTCGGAGCAGCAGCACAGCGCTCAGGCCATGTTCAACTTGGGCTACATGCACGAGAAAGGCCTGGGCATCAAACAGGATATCCACCTGGCCAAGCGTTTCTACGACATGGCTGCTGAGGCTAGTCCTGAAGCTCAGGTGCCCGTCTTCCTGGCTCTGTGTAAACTGGGCCTGGTCTACACCCTGCAATACCTGCACGACCTCAACATGAGTGAGGTGGTCAGTCAGGTGGACCTGGACCAGCTCCTGGGCCCTGAGTGGGACCTCTACCTAATGACGGTAATCGCCCTGCTGCTAGGCACCGTCATCGCCTACCGCCAGAGACAACACCAGGCAatgccccctcctcccccagccaGGCCTGCTCAGGAGCAGGCCCAGCCGGAGGCCCAACCTGAGGCCCAGGCCCAGCCTGAGGCCGAAGAGGCGCAGCAGTGAGCGATAGAGATGGAGTGGGAAGAGGGAAAGGGAAGGTGATATCCTGACCCATACCCTCTTCTCTGGTGGGGTGGGTAAAGGCAGACTAACATGCTCCCATCTTGGGCACCACCTTTTCCCTCCTGACTCCGGCATGTTGACCACAGACTGTAGGCTACTGAACAGGCCAGACTCGCCCTActtaactctctgtctctgtcaatgcTCTCAGACCTTCCAAGTTGAAGAATGAAGAAAGGAATCggtgagagggagagtggagtagGTTGATGGACAAGGCCATGGAACAGAGGCTGTAGAAAAGACAATATAGACTCAACCTCTTAGAGTGTGACTCAGGGTACCGGCAGCAGAATCACTTCTCAGAACTAGCCACGTGGGGCGATCGAGGCATCATCTTAATTATCGTCCGATCTGGGAATGAAACTGTCTTGTTTTGTGCGCTCTAGTAGCGATTGGGCTTCGGAAACAAAGACCAGATTTTTTTTCCTGCTTTTCCTTTTCAGATTTGATGTACGAGTTTAAGGTTACAACTCTACTTATCGGAAAATAAGATTCCAGATGTCTACATAAACCTTGCAATACCAACATATTCGTCAGGTGGCAGCAATCAGAACTGGGCATGTGAAGTCATCTTCATCCCCTTGTCTTTAGCGAAATATTTTTCACAAATAAGTTTtgttaagaacacattttgtAAGCATGTTCTGTTCATAAACAATGATTCTTTATCAAGCTAGTTTTTTCCAGCATGGATTTGTCAGCACATTTGCTTGATTAGCAAGCGTTAAAGGTTTTTGTGTGCAAATATTTCCTTAGCGAACATGAGTTGTTTCAATGCAGACGTTTTCTTCAGCAACTTATTTTGTTAGCGAATATCCTTAGTTAGCACAAATGTTGAACTAATGAAGTAAACATAAACGTGCTCATTTATTTGACATCCAGTTCAAAATCTTTCAGTACGTAGCTGAACTTTGGTCAACTTACTTGTTTGAGTGGACCAAGTAATGAAAGATATTGTTGTCAGTCATTTCAGCTCTGCTTTGGTATGGTCAAGGATCAGAATGAAGGATAGAGAATCCTTTGCTACCCCTTCACTAGCAACCCCATTTCCTTCCTCATTGCAGCGCATGATTCTGTGTCTCAGATAAAGTTTGATTCTTGAGATATTATCCATATAGCCTAATACAGATAATGTCCTTGAGATAATATTATAGAATGCTGATCCCCACCATAGATGCTCCCTTACACAAAAAACCTGAGTGAATGCATTGACGTTTGTTCCATCTACTAGTAATTGATAGTTTGTGGAACCATGTTTCATTTTTAATCCTTTTTAAACTGTTTGGTAAGTTGAACTGCAACAGGAAGAGATTTCATGCACAGCCTTTTTGTCAAGACTCATTAGGAGAAAGCACTGACTATTTGACTTTGTTATACATGGTTCCACTCAGGGTCATAATCGGGGTGGGACTATTGGCCCGACCCCCTCCCCTATGGAGCAGGTCTTTGCTTCTCCAGCTTCTGGTTCCCTCAGCTCAGGCTTTAATTTGTCAAGATCACAGCAATCGCCTCCCTTATGTAGTGGCGTCACATAAGCTGATTTCCACACTTTAGGAAGATTTCCTGATAAGTGTTACATTTAAAGATGTGGGTTATTGAGCCCACAATGAGGGACGCTGTACACTTGAGCAGACCTGGATCCAAATGGTCGGCCCCTGTATGTTTCTTCATGTATTATGTCAACAGCACATCAAGGACTTCATTGTCTGTCAGTTGCCGAAAGGAAAAACTCCGATTGGCATTTTTCAAAATGATTCTGTAAAATTCCCCCATTTAACATCTAGTACATTGTCACAGTGAGGGAGTATCCCTGTGGCatgctttcaacacctttttAGAGGCCaagcgaattgaggctgttctgagtgcaaaagggagagtgcaactcaatattaaggtgttcttaatgttttgtacactcagtgtatgttatgGTTATAGTGACTTGACTTTTCTGTCATAATAATGACAACAGGTTATAAACACATTGGGCAATTGATAACTGACTATACAGCTGTTACAGAAACCAATTTAGGAAAATGTGTTTGCTTTTGGTATTCCTTCACCATCTACTTAAGTGTAATGACCATGACCAGATTTGGTGggatactttttttttcttccccccccccccaacaaggATTTTTAGATTCCTGATTGATTTCCAATCCACCCAACCCTATTAAGGACAATGGTAAAGTCAGCTGTTGGACATGAGAATTATTTTATGTCATGCTATGGGGGCCCCGACCGTTAAGTTAGAATGGTACACGAGGTGCAAGttcaaaatgtggttgtgcatcagcagtttattgtgtcagtcactcaattacccatgtcagctaacaatttttagtTTGGTAAATTATTCTAGCCAGTTATTAAAACTTGTACTAATCATA

Function

GO: NA

KEGG:

id description
K14026 SEL1, SEL1L; SEL1 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU789405 lncRNA downstream 37187 28785109 ~ 28785516 (-) True G693488
TU789386 lncRNA downstream 52491 28770001 ~ 28770212 (-) True G693471
TU789383 lncRNA downstream 54547 28767751 ~ 28768156 (-) True G693468
TU789299 lncRNA downstream 156769 28634023 ~ 28665934 (-) False G693390
TU789438 lncRNA upstream 28491 28873318 ~ 28876113 (-) True G693517
TU789450 lncRNA upstream 37476 28882303 ~ 28882931 (-) True G693527
TU789451 lncRNA upstream 38797 28883624 ~ 28884010 (-) True G693528
TU789453 lncRNA upstream 41607 28886434 ~ 28886754 (-) True G693530
TU789626 lncRNA upstream 97035 28941862 ~ 28942115 (-) True G693652
XM_021611343.2 mRNA downstream 18346 28776437 ~ 28804357 (-) True si:dkey-177p2.18
XM_021612228.2 mRNA downstream 56030 28736794 ~ 28766673 (-) True LOC110529748
XM_021612226.2 mRNA downstream 94792 28704849 ~ 28727911 (-) True chga
XM_021612225.2 mRNA downstream 94793 28704849 ~ 28727910 (-) False chga
XM_021612223.2 mRNA downstream 187018 28625412 ~ 28635685 (-) True tmem251
XM_021612234.2 mRNA upstream 6047 28850874 ~ 28859472 (-) False ahsa1a
XM_021612235.2 mRNA upstream 6047 28850874 ~ 28860111 (-) True ahsa1a
XM_036985241.1 mRNA upstream 145430 28990257 ~ 29005160 (-) True LOC110529757
NM_001165131.2 mRNA upstream 180456 29025283 ~ 29029716 (-) True lcb2
LOC110529223 mRNA upstream 201596 29046423 ~ 29096035 (-) False LOC110529223
TU789291 other downstream 228272 28593341 ~ 28594431 (-) True G693383
TU789000 other downstream 340805 28478817 ~ 28481898 (-) True si:dkey-85n7.8
TU788741 other downstream 706655 28115736 ~ 28116048 (-) True G692859
TU787547 other downstream 1506768 27315568 ~ 27315935 (-) True G691747
TU787231 other downstream 1954625 26864210 ~ 26868078 (-) True G691447
TU789639 other upstream 113568 28958395 ~ 28958832 (-) True G693665
TU790962 other upstream 1156936 30001763 ~ 30062168 (-) False G694858
TU790963 other upstream 1193761 30038588 ~ 30062168 (-) True G694858
TU792305 other upstream 2002075 30846902 ~ 30847209 (-) True G696068
TU792310 other upstream 2010280 30855107 ~ 30855407 (-) True G696073

Expression Profile