RNA id: XM_036985245.1


Basic Information

Item Value
RNA id XM_036985245.1
length 7280
RNA type mRNA
GC content 0.50
exon number 24
gene id LOC110529758
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 29340904 ~ 29867575 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttcacaaagagagagagacaggctcgAGTCGGGGATAGAGAGACACTGCTGTTCTGTTCAGCACTAGGCTACTGCGCTGCGCGCATCACTGTTAATAACCTTCTCATCCcctcatcatcaccaccagcatcacGACCCCTATACTGGATGTGCTAAAACCAAAGAGCGTGTTGCTGTATATGGGACTTTGTTTTGGATTGTTGGGATATTGTTTGGATCTATACAACATAAATAAAGTTACGGGAAGTTCTGCCAGGCCTGAAACTGGACTAGAACATACAGCACAGTGCCACGGGGCGTGGCTACGGATCTGAAGCCAAGATGGTCGCCGTCTGTTTTAATCCTTGCAGTCGCCTCAAAGGAAAATCATCGGATGGGCCTCTGTATCACTGACAGAACACACTGAGGATCAGCACTGTCGATCCTTAGGTAGGAAGACGGATATTTACTCCTTTGCCTCTCTTCTCGGATTGGAAGACTGGGATTCAACTGGAGGATTTTCATCCTTTAAATAGCCTCTGGTCTATATTACAATCAAAAGGATATTGCGTCATCTTCTTAAATGAAACATTGCACGCTtgggacatacagtacattaaatATATCAGTCGTTGAAACAAAAAACACACCTGATGCTATTGACAATCTAAGGATCTCTCCCTCTAACATCTAACCCCAACTGGCACAGTCTAACCTACGTATTTTTTCTATAATGCATCCCTTTAGTCTCTCCCAGCGTGTTCTCCTGCTGCTCAGTACTCTGCTGGGCCTGTGCCAGGGTCTGGAGTTCACAGGCTCCGAGGGTCAGTGGGCTCGGTATGTCCGCTGGGACGCCAGCACCAGAAGTGAGCTCACCTTCCAGTTCAAGACAGCCGCGTCCGATGCCCTGATCCTCTACTTTGACGATGGCGGCTACTGCGACTTCCTGCTCCTCACTGTCACGGACGGGAAGCTCCAGCTCTGCTTCAGTGTCGACTGCGCCGAGACCACCGTCACCTCTGAGAAATCGGTCAACGATAGCCGCTGGCATTTCGCTACAGTCAGCCGACACAACCTCAGAACGGTCCTAGCCCTGGACGGGCAGACCAAGGCGGACGAGGTTCGACCACAGCGCCAGTTCATGAAGATCGTCAGCGACCTCTTCCTCGGAGGTGTACCCGGAGACATCAGGACTTCGGCCATCACCCTGCCGACGGTTAGAGAGCTGCCACCGTTCAAAGGAGTTATCACAGACCTGAATTACGGAAACAAGGTTCCCACGCTGATCAACAGTCAGAAGGTGCGTCTGGAGATGATGGGTCTCTGTACAGAGAACCCGTGTGAGAACGGAGGCCACTGCTCCATGGCTGATGGAGAACCCTACTGTGACTGCTCCAAAACTGGATATACCGGACGGACCTGCGGTGAAGCCGTTCAGAGGAAACCAGGCTTAGCACATCTGAAGGCATCTGAGTCAGGTAGAAACAAAGCGAGGGAAGAGAACGTGGCGACGTTCCGTGGTTCGGAGTACTTCTGCTACGACCTGTCCCAGAACCCCATCCAGTCCTCCAGCGATGAGATCACATTGTCCTTCAAGACGTGGCAGAGGAACGGTCTCTTACTCCACACGGGGAAGTCGGCTGACTACGTCAACCTGGCCCTAAAGGACGGAGCGGTGAGCCTGGTCATCAACCTGGGCTCGGGCGCCTTCGAGGCCATCGTGGAGCCCGTCAACGGGAAGTTCAACGACAACGGCTGGCACGACATCAAGGTCACACGCAACCTCAGACAGGTGACTATCTCCGTGGATGGGATCCTCACCACGACAGGGTATACCCAGGAAGACTACACCATGCTGGGGTCTGATGACTTCTTCTACGTGGGTGGGAGTCCTAGTACGGCTGATCTACCTGGTTCTCCCGTCAGCAACAACTTCATGGGCTGCCTGAAAGAGGTGGTCTACAAGAATAATGACATCCGTCTAGAGCTCTCCCGTCTGGCCCGCATCGTAGACCCCAAGATGAAGCTCCAGGGTGACGTGGTGTTTAAGTGTGAGAACGTGGCCACCCTGGACCCTATCAACTTCGAGAGCCCCGACTCCTACCTCAGCCTCCCCAAGTGGAACACCAAGAGAATGGGTTCTATCTCCTTTGACTTCAGGACCTCAGAGCCCAACGGACTCATCCTGTTCACCCACGGCAAGGCCCAGGACCGGCGGGACGCAGCAGGGAAGAAGAACTACAAAGTAGACTTCTTTGCTGTAGAGCTGCTGGATGGAGGACTGTACCTGCTGCTGGACATGGGCTCAGGCACTATCAAGGTCAAAGCCACCCAGAACAAGGTCAATGATGGAGCCTGGCACCACGTGGACATTCAGAGAGATGGACGttcaggcaTCATCTCAGTGGACAACCGTCGTACTCCGTTCACGGCCAGCGGAGAGAACGAGATCTTAGACCTGGAGGGAGACCTCTACCTGGGTGGTCTCCCTGACAACCGCGTAGGCCTGGTGTTACCTACCGAACTGTGGACGGCCATGTTGAACTACGGCTATGTGGGCTGCATCCGGGACCTCTTCATCGACGGACGCTCCAAAAACATTCGGGCCATCTCCGAGTCCCAGAACACCACCGGCATCAGGCCCACCTGCAGTAAAGTCACGGGGAAACAGTGTGATAGCAATCCCTGTAAGAACAACGGCGTCTGTAAGGAAGGGTGGAACCGGTTTATCTGCGACTGCACCGGGACTGGGTTCTGGGCCGGCACGTGTGAGAGAGAGGCGTCCATCCTGAGCTACGACGGCAGCATGTATATGAAAGTGGTGATGCCAAGCGTGATGCACACTGAGGCAGAGGACGTCTCCCTCCGCTTCAAGTCCCAGCATGCATTCGGGCTCCTAATGGCCACTAACTCTCGGGACTCCGCTGACACACTCCGTCTCGAGCTGGACAGCGGCCGCGTCAAACTCACGATCAACCTAGACTGTGTCAGGATAAACTGTAACACCAGCAAGGGACCAGAGATTCTATATGCGGGACAAAAGCTCAATAATTATGACTGGCACTCCGTCAGAGTTGTCCGACGCGGTAAAAACTTCAAACTGACAGTCGACGAAGACATGGCTGAAGgccagATGGCAGGTGACCACACTCGGCTGGAGTTCCACAATGTGGAGACAGGGATTCTGACAGAGAGACGTttcgtctcctcttctcccccacccTTCGTTGGACACCTGCAGGGCCTGAAGTTCAACGGCATGTTCTACATTGACATGTGTAAGAACGGCGACATCGACTTCTGCGAGCTCAACGCCCGCTTCGGCATGCGCTTCATCATCGCCGACCCGGTGACCTTCAAGTCCAAGGGCAGCTACCTGGGCCTGGCCACCTTGCAGGCCTACACCACCATGCACctgttcttccagtttaaaaccACCTCCCCGGACGGATTCATACTGTTCAACAGCGGCGACGGAAACGACTTTATCGCTGTTGAGCTGGTCAAAGGGTTTGTCCACTATGTGTTTGACCTGGGGAACGGTCCCAGTCTGTTGAAGGGGAACAGTGACAGTGCACTGAATGACAACCTGTGGCACAACGTAGTTATCACCAGGGAcgccaccaacacacacaccctcaaggTGGACGCCAAGTCCGTCACGCAGAACGTCAACGGAGCCAAGAACCTCGACCTCAAAGgGGATCTGTTTGTGGCAGGGCTGGGGCCTAACATGTACCAGAACCTTCCTAAACTGGTGGTCTCTAGGGAAGGTTTCCAGGGTTGTCTGGCGTCTGTAGATCTGAACGGCCGCCTGCCTGACCTCATCAACGACGCCCTGTTCCGTTCCGGACAGATCGAACGCGGCTGTGAAGGACCCAGCACTACCTGTCAGGAGGACTCCTGTGCCAACATGGGCGTTTGTATTCAGCAGTGGGAGAACTTCACCTGCGACTGCACCATGACATCTTACACAGGGACGCAGTGCAACGACCcTGGTACCACCTATATCTTCGGTAAGGGCGGGGGTCTGATCACGTACACGTGGCCTAACAACGAGAGGCCCAGCACGCGTACCGACCGCCTGGCTGTAGGCTTCAGCACCACCATCAAGGACGGCATCCTGGTCCGCATCGACAGCGCGCCGCGACTCGGTGACTACATCATGCTACACATCACGGAAGGCAAGGTGGGCGTGACCTTCAACATTGGTACGTCAGACATCAGTGTGAAGGAGGTAACCATGACGATCAACGACGGGAAGTACCACCTGGTGCGCTTCACCAGGAATGGGGGCAACGCCACTCTGCAGGTGGACAACTGGCCAATCAACGAACACTTCCCCACAGgccGGCAGCTCACCATCTTCAACACCCAGGCTACCATCTCTATAGGCGGTAATGACCGTAAACGTCCCTACCAGGGACAGCTGTCCGGTCTCTACTACAACGGCCTCAAGGTCCTCAACATGGCTGCCGAAGGCCACGCCAACATCAAGGTGAACGGGAGCGTGCGATTGGTGGGGGATGTACCCACCAGTAGGGGCGCTGCCCGCACCACCACCTCCGTGCCACCTGAGATGTCCACCACCTTCATAGAGACCACCACCACTCTGTCTACGACCACCACGAGGAAACAGCGCTCTCCACCCACCATTCAGCAGACGACAGATGACATAGTATCGTCGGCGGAGTGTTCCAGCGACGACGAGGATCTGGAGGAGTGTGATTCCGGACACGCAGATAAGATCTTGACCACGTCGGCCTATGAAGGTGGCTACAAAGCTCTCGCGCCCAAGTGGGAAGCCAAGGACTTGAGGCCTAGCAAAGCCTCAGAGGCGGGTAGGACTACACCCACCCCGCCTCTACCCAACCTCGGGGGCACTGTAGCGGAGGCATCCCTCCCCTCGGACGGCACGCCGCCCAAACTGCCCGCCGGGAAAATGGACAACCGCGAGGTGATCAAACCCCTACAGCCAGACATTGTCCTGCTGCCTCTGCCGACCACGTCCTTCGACCTGGACGGCACCAAGCCCCGCGGGCCTCTCATCACCTCGCCCATGCTACGCACGGTGCCTGCCACGTTACCCACCGTACCCGTCGTAAGGCGGGTACCCCCTGGGGCCTCGGAGGTGATACGAGAATCAAGCAGCACAACAGGCATGGTGGTGGGCATCGTCTCGGCCGCAGCACTctgcatcctcatcctcctctacgCCATGTACAAGTACAGGAACAGAGACGAAGGCTCCTACCAGGTAGACGAGACACGGAATTACATCAGCAACTCGGCACAGACCAACGGTGCCGTGGTGAAAGATAAAACGCCCAGCGGGGGCAGTGGTGCCAAGGGAGCCAGCAGCAAGAGACCGAAAGACAAGGACAAGGAATACTATGTATAGAAAAAAATCAACCATTCCCGAAtgcaaacaaaaaaatataaaaaaactgtTTGGAGAAAATAGGAATAAACGCTTGACAGTACCATATTGGGAGCTGTAATTCAAAAAGGAAAACAAAATCTGCTCATGAGAACTCAAAGTGAATGAGTCCAAGTTTAAACATTTTCAAATGTACTGTGACCTAAAAGCACACTATGGTAAGCATACAGAGAAACAGGCTGATAGGGACACTACTATAAGAGACCTTGTTGTGACGAGATGACGGAGCTCTGTCCGGAGTCGTTGCCAGAGGTTTGGCAGTGTAAGATACTTCACTGTTACTTCGCTATCCCTCCCAAGTGACTGTCAGAGATGTGTGATCCTTGGCGTAAACAACCTTGTCCATTGTAAACctgtaaaataacaaaacaaaccatTATTTCGGCCATTCTGAGCATGCATGTGAGATGTATGTGACGTGGTGCTGGCATCTGTGTGAGGGACCTGAAGATAAGAACGAATGGTCAGTTAATTAAAGATAAAGTTTGAAAGACAAAATATAATTAGCATAAAACATTTCCATTTCTATGCCTAGCATTGATATGAGGGAAGGTATGTGTCTGGTGGCTAAGGTGTATTTCTTCCCCCCTATGTTTTTTGAGGGATGAGAGACATTGTCAGGGCTGACCAGTCGATGCTTAATAATGAATGGTAGTGCAGTAATGTAtctccattttttttaaaacctttttccCCCACCAGTCTCAAATAAGGATTTGAAATCTACAGTATGCATGACATCCACAATCAAGAGGGTATTCAACCATACTAGAGTGGATGCAGCAGGCAAAATGCTATGTTTATTTTATCATATACTTTACAGAACATTAGATCCCAGATAGCAtttttatttcaatttattttgttTTCCATAGAACACTGATTCAGTTATTTGTTACGTTCTGTTTGTCCCATTTTTTCAGTGTGTGGAGGTTTATTCAACGTCGTGACGTCGGAGAGATTTTTGGTACAATATTGAAAACAATGTGGCTAACGAAGACTTAACCAATGTGAAAAagttttgctttttttttttctgtTGTCACAGTCAACTGTGTCAAAACGACAACTATGTTTACATATGTTATTGCATCATAGCCGTCGTCCTTTGCAGGTCAATATTGTACATaacattagatttttttttttgtattgtacAGACAGATCATTTGAGCTGATTTATTTTCTCGGTGTACTACAATACATGACAAAAAAATTGAACCTTTTTTTGATGTTGAGAAAGTGATCATTGGAGAAAGACTGGAGAAAGCGATGCTGTACTTGCGTTTTTTTTgtaaggagaggaggaaaatgtTGATAAGTTAGAAAATCTAGTATTTTTGGATGGTGTTTCTAAAAACGCATGAATATTTGACCAATGGGAGAAGTCGATCGATATTGTACTAGGGCCTCCTGATTTTGGATTATGTTGATTGcttatttgttttttgttgtttttttttacataaaaacaGTGAAGAGAAACCTAATAATAAAGAAAGAATCTGGTGGAGTTTTGAGACCCAGTACTGGCACCTTACTAAGATACAGGATTATGTTGTTTTTACTGTGATGTCTATGTTCCTTCCTTTCGGTTGTTGCTGTTCTTTTATGTTTATGTTTCTTATTGTGCAGTCTTCATTTCAATTCCTATCATTTTTATGACAGTTTGGGCTGgcagcacattttttttgtatttatttatgacTTAATATATTTGATTGTGTCCTGTTCAGTTCGCATTCTAAGCAAATCTCAAGTCGTTGTGCACATTCATTTGGATTTTGTGTTGTTATTGCTGCTTTTCAACCCATTAATAAATCCCAGCAATAAAATGTTCTTCCCCAAGTTTTCAATGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU789941 lncRNA upstream 59102 29281578 ~ 29281810 (+) True G693964
TU789937 lncRNA upstream 60927 29279782 ~ 29279985 (+) True G693960
TU789919 lncRNA upstream 70007 29270687 ~ 29270905 (+) True G693942
TU789908 lncRNA upstream 81023 29259633 ~ 29259889 (+) True G693931
TU789906 lncRNA upstream 83446 29257158 ~ 29257466 (+) True G693929
TU790379 lncRNA downstream 3247 29870822 ~ 29871051 (+) True G694332
TU790380 lncRNA downstream 4087 29871662 ~ 29871885 (+) True G694333
TU790386 lncRNA downstream 10890 29878465 ~ 29878717 (+) True G694339
TU790388 lncRNA downstream 14127 29881702 ~ 29882066 (+) True G694341
TU790389 lncRNA downstream 14512 29882087 ~ 29882320 (+) True G694342
XM_021612246.2 mRNA upstream 373164 28951530 ~ 28967748 (+) False si:dkey-177p2.6
XM_021612247.2 mRNA upstream 373164 28951547 ~ 28967748 (+) False si:dkey-177p2.6
XM_021612244.2 mRNA upstream 401024 28930674 ~ 28939888 (+) False cdca4
XM_021612271.2 mRNA downstream 71534 29939109 ~ 29970121 (+) True LOC110529762
XM_021612277.2 mRNA downstream 282413 30149988 ~ 30158324 (+) False LOC110529765
LOC110529766 mRNA downstream 300546 30168121 ~ 30173329 (+) True LOC110529766
XM_036985253.1 mRNA downstream 308164 30175739 ~ 30190971 (+) True LOC110529767
XM_036985254.1 mRNA downstream 359834 30227409 ~ 30243300 (+) False LOC110529768
TU789468 other upstream 402639 28930760 ~ 28938273 (+) False cdca4
TU789469 other upstream 402639 28935489 ~ 28938273 (+) True cdca4
TU789102 other upstream 635160 28704850 ~ 28705752 (+) True G693207
TU789022 other upstream 782539 28495285 ~ 28558373 (+) True btbd7
TU788261 other upstream 1270684 28069900 ~ 28070228 (+) True G692424
TU796067 other downstream 4260018 34127593 ~ 34128301 (+) True G699605
TU797136 other downstream 5587273 35454848 ~ 35462040 (+) True LOC110529856
TU797266 other downstream 5745589 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 6036474 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 6832863 36700438 ~ 36700739 (+) True G702415

Expression Profile