RNA id: XM_036985250.1


Basic Information

Item Value
RNA id XM_036985250.1
length 3844
RNA type mRNA
GC content 0.45
exon number 11
gene id gtf2a1
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 29972511 ~ 29986359 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACTCGCAGCTCCAGCTCAGTATATAAAGGAGGACAACGGCGGGAGAAGAACGGCTGGGAAGGCACAGACCGGATTTGTAAATAAGACCGTTCAAATCTGTGTTTTATTTACAAAAGTTATGCCGGCTAATTTTAAGTATCGTACCCAGTTGTTTTAGATCGTTTTTCCTTTTTTTGCTCTCATTCCTCGCTTCATTTTCGTGTGGTTTTACACTACGCGTAATGGCGAGCTCGGCTAACTCGAATCCAGTGCCTAAACTGTACAGGTCTGTGATTGAAGATGTTATCAACGAAGTCCGGGAGCTCTTCCTGGATGAGGGGGTGGACGAGCAGGTTCTCATGGAGCTCAAAACGCTGTGGGAGAACAAGTTGATGCAGAGTAAGGCAGTGGAGGGCTTCCATACCGAGGAGCAGGCGGCCCTCCAGGCAGCAGCCCATCAGCAGGCCCAGCAGGCCACCCAGCAAGCCCAGGCACAGCAGGTCCTCCTGCCCCCGCAGCAGCAAGCACCCCAGCAGCAAGTCATTGTGCAGGATCCTAAGATTCTGCAGCACATGAGTGCAACAGGGATGAGTGCAGCAGCCACCGCAGCAACCCTGGCCTTACCCACAGGTGTCAGTCCCTACCATCAGCTTATCACCAGCCAAGGCAATTTGTCCCAGAATTGTTATATTAAGACAGCGGACGGTCAGATCCTACAGTTTGTGCGTGCAGCCAACGGTGCTCAGTACATCATCCAGCCTCAGCAGCAGATGGTGCTACAACAGCAGGTCCTTCCTCAGATGCAGCCGGGTGGCGTGCAGGCTCCCGTAATACAGCAGGTTCTGGCTCCTCTCCAGGGAGGCCACCCGCAGCAGACTGGAGTCATCATCCAGCCTCAACAGATCGTCCTCACTGGGAACAAGGTCCAGCAGAACGCACAGGTAATGCAGATGCCAGGCCAGCCCGGCCAGGTGCAGCAGATCCAGCAGCAGGTCCAACAAGTCCAACAGGCCCAGGGTGGCGCTGCGCCAGGGCCACCACAGCAGCAAGCCAAGCAGCAGCCTCCTATGATGCTGCAGGTTGACGGAGCGGGGGACACGTCCTCAGAGgatgaggacgaggaggaggaggagtatgatgaggatgaggatgaagacAAGGATAAAGATGGAGGGGAGGACGGCCAGGTGGAGGAGGAGCCTCTGAACAGTGAAGATGACGTAAGTGATGAGGAGGACCAAGAACTGTTTGACACAGAGAACGTGGTGGTGTGCCAGTACGACAAGATCCACAGAAGTAAGAACAAATGGAAGTTCCACCTGAAGGATGGGATCATGAACCTGAATGGCCGAGACTACGTCTTCTCCAAAGCCATCGGGGACGCTGAGTGGTAAAACGCACCACAAAAAAGGgtacatccaaaatggcaccctattgccgatttttatagtgcactacttttgaccagggcccataatcctctggtcaaaataagtgcactacataggggaatAGGCGGCTGTTTGGAATGTAGGCAAAGCAACAAAACACCACAAAAGAACTCTGGAACTTTCTGTTCGAGAAAGAGGGAGACCTCAATAACTGAAGACCCAGGGAATCACTGGAGACATTTCAGCCCAAAGACCTGTGGTGGGTTGGTGGGCGAAGGAAAATATATGACACCACCCAAAACTGTGAGATGCACATCTGAATGAATGGTATTTCAGTATCAATACCCAACAAGCCTGAGAAGACTGTCCCTGCATCGTAGAACCCTCAGAGGAGGAGGGATCCTTTGCGCTTCTTTGTTTGAATGAATTCAACTTCAGTTTGAACTGACGGTCTTACACACTTGTAGTTGTAGTGGACCAGATATAACCACTGACTTGACCCACCCTAAACACTTTATATCTATAGGTTTGAATCGAGGTCAAAGTTCAGTGAAAATGCCCAGCGATTGGACAGGGAAATCTGTCAATTCCAGTTGTGCCCAGTGATTGGCTAGGGAACTTGTCAGTCAATCCTAGTAGGGTTTTTTTTCTCTCAGTGACCCTGCACTACACAGTAAAGTTGACACCAGTGTATTGAGTTAAATTGGCTGTTTGCAAAGGCCGTCATTATTAGCTTGTTGTTGTAAATCTCCATTCCATGTCACTGATATGATATTCCTGCCACGTGTTCTCATGGTCCACACTAGAAGTTTTCTTCCGGGTATACAGTTGATACTAGTACTCACTGTGTGTTCGGCAGTGTAGCGCTCCCCTCCTGTGATCCTTGTAACTTTTTCTATTTTTATTGTTATGATGATGACCAACCCCACTAAAGGCAAAAGGTTGGTAATGACCTAGTGATGTAAATTGAGTGAAGGGAACCCAGGGCacctcctattccctatagaaTTCACTTttgtgagccctggtcaaaagtagtgctctacaaagggaataggatgccattggggataaaaacaaataaaaataattcccCTTCTGCTTCTTTTTCAAGCCCTCCTAAATCATTCTATCGTTGACTGACCCCGTGCAAAGACGGTTAATGAATCAACCAATGAATGGATAGATACAATTATTGTACAAATGTCTACAAACACTTACAGTTTTCCTGTTTTGTGTATCTGGTCTTCTAATTCAGTGGTTAATCAGTGCAGCCAGCTGGGGATTTGCATTGTCAGTGTCGATGTATCGTGAAGTCAGTCAAGTTTGGCCACAGCATGCCCAatattgtgtgtttgtgaggtCTGTCCGAGTTCACTGCTTGTTGAAGATGGATTCATCAGTTAATGTTGTTGGAAGAATGGACACCCCACATCCCCTTTCCGATTTTACAGTACAAATAGATAACATTTTTTGTGATTCATTTGTTTTGTGTCGATTTTTGTATTTATTCCTGGAAGCTCAGGCAGTGTTATATTTTTTGGCGGGGGGGGTAAAAGTAATCAAGAAGCCGCACCAATCTGTGCTCTTATGATGATAACGAAGTGTTCCTTTTTTCTTTTACTTGGTTGGACTAGGCTCCATGTGCTGTGGGCCATGTCTTGGCTGCTGTGTACAGCACTGTCTGTCTTGTGCTTTCATTTTAATCATGATGATTTTAGAAAAGTCCTGTTCAAGCAGGTTTCAACTTCTGGGTGGCAAGGTGTGTGTTCTCTGCAGTTTATTTTAACAGTGCCCCATTGCAACAAAAAAATGTCTCTGAAATAAATAAAGTGTTTTCAGCTTTTTCATAGTAGCTTTGATTCTGtttgggttttgtgtgtgtgtgtgtatatacgtaTGTCTGTGCAGTCATTCTCAGACACAATGGCCCAACTCATGACTAAAGTAGTCATTCTGTTGAGGAATGTATGCTGGAACATTTCAGAGTAGCTTCTAGTTCTGGAACTCTGCGCTTGGACAAGCAGTAGCATATGATATGAGCCACTCTTCTGCTCAAGtggttttgaccattttaatCAAATAATTTTAGCATTGTTCCTAATTCCACATGTTCTAATTCCCTGATGTAATTTCGTTTGTGCCTTTTTGGATTTTAGTTTGGCATTTAGGTATTCACATATAATGATCATTTGGAGAGGGTTTCTCTAGATAATGTACTTTGACTTATTTTATTCTTCATGTACCATGCTTTTCAACTGCTGTTCAAAAAAAAAAACCGGTTTGTTTGAGATGTATTGTTTGTATCATTCATAtaaccatttttattttatttaaaatcaGATCTTTGTGAATGACCGTAACTTGGAGGATGTGCTTTGAATACAAGTAATTAGAGAAGGTAGTATTTTATTGAGCAGACATGTTGTTTTTgccttttctaaacattttaTTAAAGTAATATCAAAGCTG

Function

GO:

id name namespace
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0005672 transcription factor TFIIA complex cellular_component

KEGG:

id description
K03122 TFIIA1, GTF2A1, TOA1; transcription initiation factor TFIIA large subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU790786 lncRNA downstream 40468 29931811 ~ 29932043 (-) True G694706
TU790785 lncRNA downstream 41126 29931000 ~ 29931385 (-) True G694705
TU790776 lncRNA downstream 51058 29921128 ~ 29921453 (-) True G694697
TU790753 lncRNA downstream 77738 29890662 ~ 29894773 (-) True LOC110529761
TU790751 lncRNA downstream 83930 29888306 ~ 29888581 (-) True G694673
TU790970 lncRNA upstream 32538 30018897 ~ 30086140 (-) True G694865
TU790965 lncRNA upstream 38491 30024850 ~ 30027627 (-) True G694860
TU791003 lncRNA upstream 108395 30094754 ~ 30094981 (-) True G694898
TU791006 lncRNA upstream 113823 30100182 ~ 30100426 (-) True G694901
TU791009 lncRNA upstream 117613 30103972 ~ 30104230 (-) True G694904
XM_021612269.2 mRNA downstream 34180 29890555 ~ 29938331 (-) False LOC110529761
XM_021612267.2 mRNA downstream 34186 29890555 ~ 29938325 (-) False LOC110529761
XM_021612268.2 mRNA downstream 34186 29890555 ~ 29938325 (-) False LOC110529761
XM_021612264.2 mRNA downstream 507067 29460990 ~ 29465444 (-) False LOC110529760
XM_036985252.1 mRNA upstream 15405 30001764 ~ 30061967 (-) False ches1
XM_036985251.1 mRNA upstream 15405 30001764 ~ 30062244 (-) True ches1
XR_005052851.1 mRNA upstream 52222 30038581 ~ 30040011 (-) True LOC118965505
XM_021612284.2 mRNA upstream 230649 30217008 ~ 30227240 (-) False LOC110529769
XM_021612285.2 mRNA upstream 230649 30217008 ~ 30227240 (-) False LOC110529769
TU789639 other downstream 1013679 28958395 ~ 28958832 (-) True G693665
TU789291 other downstream 1378080 28593341 ~ 28594431 (-) True G693383
TU789000 other downstream 1490613 28478817 ~ 28481898 (-) True si:dkey-85n7.8
TU788741 other downstream 1856463 28115736 ~ 28116048 (-) True G692859
TU787547 other downstream 2656576 27315568 ~ 27315935 (-) True G691747
TU790962 other upstream 15404 30001763 ~ 30062168 (-) False G694858
TU790963 other upstream 52229 30038588 ~ 30062168 (-) True G694858
TU792305 other upstream 860543 30846902 ~ 30847209 (-) True G696068
TU792310 other upstream 868748 30855107 ~ 30855407 (-) True G696073
TU792778 other upstream 1490995 31477354 ~ 31478027 (-) True G696499

Expression Profile