RNA id: TU790870


Basic Information

Item Value
RNA id TU790870
length 288
lncRNA type sense_over
GC content 0.46
exon number 1
gene id LOC110529765
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 30149988 ~ 30158324 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCGGCGTCCCTTGATGTGGAGGTCAGTTAGACGCGCACTGTTGCAGACAGACAAAAACATATTGCAGTTGACTATAACAGCCTTGGGTTTATACAGAGTACACCATTTGAAGACCAATTCTATTCAATGTGAGCTATTCGAAAGCACCTTCTTCTTAACGCGCTCTGTGAGGGGCGTATTTTGAGACGAAGGGAGGTTGCGCATTGAACGCAGCGTCGTAAACTATTTCGCTATCCAGCCCCAGTCAAAGGTTTGTGGATTTTATTTTTTCGTTTGCACACCCGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU790905 lncRNA upstream 4538 30145266 ~ 30145467 (+) True G694819
TU790904 lncRNA upstream 5025 30144707 ~ 30144980 (+) True G694818
TU790903 lncRNA upstream 5312 30143941 ~ 30144693 (+) True G694817
TU790902 lncRNA upstream 7791 30141956 ~ 30142214 (+) True G694816
TU790901 lncRNA upstream 8693 30141092 ~ 30141312 (+) True G694815
TU790869 lncRNA downstream 6143 30156435 ~ 30158257 (+) True LOC110529765
TU791112 lncRNA downstream 51174 30201466 ~ 30201774 (+) True G694986
TU791096 lncRNA downstream 72095 30222387 ~ 30222914 (+) True G694970
TU791133 lncRNA downstream 119234 30269526 ~ 30272291 (+) True G695005
TU791146 lncRNA downstream 142262 30292554 ~ 30293187 (+) True G695018
XM_021612271.2 mRNA upstream 179884 29939109 ~ 29970121 (+) True LOC110529762
XM_021612253.2 mRNA upstream 282430 29340915 ~ 29867575 (+) False LOC110529758
LOC110529766 mRNA downstream 17829 30168121 ~ 30173329 (+) True LOC110529766
XM_036985253.1 mRNA downstream 25447 30175739 ~ 30190971 (+) True LOC110529767
XM_036985254.1 mRNA downstream 77117 30227409 ~ 30243300 (+) False LOC110529768
XM_036985255.1 mRNA downstream 77117 30227409 ~ 30243300 (+) False LOC110529768
XM_021612280.2 mRNA downstream 77215 30227507 ~ 30243300 (+) False LOC110529768
TU790056 other upstream 357258 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 1211732 28930760 ~ 28938273 (+) False cdca4
TU789469 other upstream 1211732 28935489 ~ 28938273 (+) True cdca4
TU789102 other upstream 1444253 28704850 ~ 28705752 (+) True G693207
TU789022 other upstream 1591632 28495285 ~ 28558373 (+) True btbd7
TU796067 other downstream 3977301 34127593 ~ 34128301 (+) True G699605
TU797136 other downstream 5304556 35454848 ~ 35462040 (+) True LOC110529856
TU797266 other downstream 5462872 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 5753757 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 6550146 36700438 ~ 36700739 (+) True G702415

Expression Profile