RNA id: XM_036985253.1


Basic Information

Item Value
RNA id XM_036985253.1
length 834
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC110529767
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 30175739 ~ 30190971 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCGCGGAGGGATACATAGTCCCCATTCTCACCACCACGGCGACACACCTCCATCCCGCTGGAAACTCCATCTAAGGAACGAGCACACTCGTTCTCTAGTTCATAGACAATCAGCCCAGATCCATCGAACATGGCCGATCAACTAACAGAAGAACAGATTGCAGAGTTCAAGGAGGCGTTCTCCTTATTCGACAAGGATGGCGACGGCACCATCACGACCAAAGAGCTGGGCACCGTGATGAGGTCGCTGGGACAGAACCCCACAGAGGCGGAGCTGCAGGACATGATCAATGAGGTCGACGCCGACGGCAATGGCACCATTGACTTCCCGGAGTTCCTGACCATGATGGCCAGAAAAATGAAGGACACAGACAGTGAGGAGGAGATCCGTGAAGCCTTCAGGGTATTCGACAAGGACGGAAACGGCTACATCAGCGCAGCAGAACTCCGTCACGTCATGACAAACCTGGGGGAGAAGTTAACAGACGAGGAGGTAGACGAGATGATCAGAGAAGCAGACATTGACGGAGACGGACAGGTCAACTATGAAGAGTTTGTACAGATGATGACTGCAAAGTGAAGCTCGGCCAACCTGCCTTGTCCCCTTGTAGAAGACGATAAAAAAAGATCACAAGTTTTACTTACCTCTTGGGAAAAAAAATGTTCATTTATTCATACTGTTTCTGTATAGAAAATAATTGAATGTTAAAATAAAATATCCTTCTGTCCATCTACACAGAGAAAACAAAAATCTACAAAAAATATCTGCATGATATGgttagtgacccccccccccaaataagaTGAGTTCAGCATCAGTACTTCAAAGACGCA

Function

GO:

id name namespace
GO:0022400 regulation of rhodopsin mediated signaling pathway biological_process
GO:0001975 response to amphetamine biological_process
GO:0007190 activation of adenylate cyclase activity biological_process
GO:0045087 innate immune response biological_process
GO:0010881 regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion biological_process
GO:0051412 response to corticosterone biological_process
GO:0007202 activation of phospholipase C activity biological_process
GO:0005513 detection of calcium ion biological_process
GO:0002027 regulation of heart rate biological_process
GO:0000086 G2/M transition of mitotic cell cycle biological_process
GO:0030168 platelet activation biological_process
GO:0002576 platelet degranulation biological_process
GO:0038095 Fc-epsilon receptor signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0035307 positive regulation of protein dephosphorylation biological_process
GO:1901841 regulation of high voltage-gated calcium channel activity biological_process
GO:1901844 regulation of cell communication by electrical coupling involved in cardiac conduction biological_process
GO:0043647 inositol phosphate metabolic process biological_process
GO:0043388 positive regulation of DNA binding biological_process
GO:1901339 regulation of store-operated calcium channel activity biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0051000 positive regulation of nitric-oxide synthase activity biological_process
GO:0048011 neurotrophin TRK receptor signaling pathway biological_process
GO:0032465 regulation of cytokinesis biological_process
GO:0005980 glycogen catabolic process biological_process
GO:0051343 positive regulation of cyclic-nucleotide phosphodiesterase activity biological_process
GO:0032516 positive regulation of phosphoprotein phosphatase activity biological_process
GO:0016310 phosphorylation biological_process
GO:0046209 nitric oxide metabolic process biological_process
GO:0006006 glucose metabolic process biological_process
GO:0060315 negative regulation of ryanodine-sensitive calcium-release channel activity biological_process
GO:0060316 positive regulation of ryanodine-sensitive calcium-release channel activity biological_process
GO:0007173 epidermal growth factor receptor signaling pathway biological_process
GO:0034704 calcium channel complex cellular_component
GO:0030426 growth cone cellular_component
GO:0005813 centrosome cellular_component
GO:0000922 spindle pole cellular_component
GO:0005829 cytosol cellular_component
GO:0005576 extracellular region cellular_component
GO:0005876 spindle microtubule cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0030017 sarcomere cellular_component
GO:0043548 phosphatidylinositol 3-kinase binding molecular_function
GO:0043274 phospholipase binding molecular_function
GO:0017022 myosin binding molecular_function
GO:0031800 type 3 metabotropic glutamate receptor binding molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0008179 adenylate cyclase binding molecular_function
GO:0030235 nitric-oxide synthase regulator activity molecular_function
GO:0019904 protein domain specific binding molecular_function
GO:0050998 nitric-oxide synthase binding molecular_function
GO:0048306 calcium-dependent protein binding molecular_function
GO:0005246 calcium channel regulator activity molecular_function
GO:0072542 protein phosphatase activator activity molecular_function
GO:0031432 titin binding molecular_function
GO:0044325 ion channel binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0031996 thioesterase binding molecular_function
GO:0031997 N-terminal myristoylation domain binding molecular_function

KEGG:

id description
K02183 CALM; calmodulin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU790869 lncRNA upstream 17482 30156435 ~ 30158257 (+) True LOC110529765
TU790870 lncRNA upstream 25447 30150005 ~ 30150292 (+) False LOC110529765
TU790905 lncRNA upstream 30272 30145266 ~ 30145467 (+) True G694819
TU790904 lncRNA upstream 30759 30144707 ~ 30144980 (+) True G694818
TU790903 lncRNA upstream 31046 30143941 ~ 30144693 (+) True G694817
TU791112 lncRNA downstream 10495 30201466 ~ 30201774 (+) True G694986
TU791096 lncRNA downstream 31416 30222387 ~ 30222914 (+) True G694970
TU791133 lncRNA downstream 78555 30269526 ~ 30272291 (+) True G695005
TU791146 lncRNA downstream 101583 30292554 ~ 30293187 (+) True G695018
TU791150 lncRNA downstream 105694 30296665 ~ 30297082 (+) True G695022
LOC110529766 mRNA upstream 2410 30168121 ~ 30173329 (+) True LOC110529766
XM_021612277.2 mRNA upstream 17415 30149988 ~ 30158324 (+) False LOC110529765
XM_021612271.2 mRNA upstream 205618 29939109 ~ 29970121 (+) True LOC110529762
XM_021612254.2 mRNA upstream 308164 29340915 ~ 29867575 (+) False LOC110529758
XM_036985254.1 mRNA downstream 36438 30227409 ~ 30243300 (+) False LOC110529768
XM_036985255.1 mRNA downstream 36438 30227409 ~ 30243300 (+) False LOC110529768
XM_021612280.2 mRNA downstream 36536 30227507 ~ 30243300 (+) False LOC110529768
XM_021612283.2 mRNA downstream 36536 30227507 ~ 30243300 (+) True LOC110529768
XM_021612288.2 mRNA downstream 60495 30251466 ~ 30263484 (+) True LOC110529770
TU790056 other upstream 382992 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 1237466 28930760 ~ 28938273 (+) False cdca4
TU789469 other upstream 1237466 28935489 ~ 28938273 (+) True cdca4
TU789102 other upstream 1469987 28704850 ~ 28705752 (+) True G693207
TU789022 other upstream 1617366 28495285 ~ 28558373 (+) True btbd7
TU796067 other downstream 3936622 34127593 ~ 34128301 (+) True G699605
TU797136 other downstream 5263877 35454848 ~ 35462040 (+) True LOC110529856
TU797266 other downstream 5422193 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 5713078 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 6509467 36700438 ~ 36700739 (+) True G702415

Expression Profile