RNA id: XM_021612288.2


Basic Information

Item Value
RNA id XM_021612288.2
length 1801
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC110529770
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 30251466 ~ 30263484 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATGACTACTAACCAGCTGATGGCTTTTTGCAATAGAATATCATGAATAACACGACATCGGTTACAAAGCTGTTATTCTCCAAGTAATAACAACTGTGCAATACCTATTCTTtaatatttttgttatttgcgtGCTGTCTCGTTATTTAATCGCCGTCCAGACGTAATTGAAGTACATAAGACCGTTTGCAGCCAAAGAAGATGTCAGGAAAAGAGAGAATCGACGTCTTCCCCTCTAGAATGGCCCAGACCATCATGAAGGCCCGTCTGAAGGGGGCCCAGACTGGTAGAAACCTACTGAAGAAGAAGGCTGATGCCCTCTCCATGCGCTTCCGTCAGATCCTCCGCAAGATCATCGAGACAAAGACATTGATGGGTGAAGTGATGAGGGAGGCGGCCTTCTCTTTGGCTGAGGCGAAATTCGCCGCTGGCGACTTCAGCACCACTGTCATCCAGAATGTGAACAAGGCCCAGGTGAAGGTTCGGGCTAAGAAGGATAACGTGGCAGGTGTCACTCTACCTGTGTTTGAGCACTACCAAGAAGGAGGGGACAGTTATGAGCTGACTGGTCTGGCCAGGGGAGGAGAGCAGGTCTCCAGGCTGAAGAGGAACTATGCCAAAGCAGTGGAGCTGCTGGTGGAGTTGGCCTCCTTACAGACTTCCTTTGTCACACTGGATCAGGCCATCAAGATCACCAACCGCCGTGTGAACGCCATTGAGCATGTGATCATCCCCCGCATTGAGCGGACCCTCAGCTACATCATCACTGAGCTGGACGAGAGGGAACGAGAAGAGTTCTACAGGCTGAAGAAGATCCAGGAGAAAAAGAAGCAGATGAGGGAGAGGACGGAGAAGGAGATCGCCGCCCGTCTGGCCAAGCTGGGCCCCATCGCCGAGCCATCCAACATGCTGATGGAGGAAACCGACCAGGACCTGCTGTTTGAGTGACGTGCCGTCACCCGTGGCTACTCCGTCACCCACATCTTATTTATTCTGTGCCTCTCCGGCCACGTTGATGTCTTCTTCTTGTGTGCGAAAGGGAAgaattgtctgttttttttttgtgtacatGTTGGTGATGTTTTGTTGTCGTTTTCAGTATTGGAGATTAGTGTCCAGATTTAGCACTGTATAGAACTGTCAGAACTTTGCAGCTAACAGCAATCACATCAGTTCACTAGAGTGTCAAACGTGTTGAAGATGAGTTATCTTTTGAATGCTTCAGTAGCAAATAATATATGTACATTGAGTTAAATGACGTGGTTTACAAATGTGAACTGTACTTAAGCATTCCATCTGATTAGGTTAGGACATAGATGGCTATTGGCAATGCTTCCATCAGAACACTCAGTCAATGCATGCTGTCATTCTGTACAGTTAAAACAGGGTGGCTGTTCTTTCCCCCCCTAAGCGTCTGTGTTGTGGATGCTAATCCCTTCCATGGTCACCACATATCAGTGGGGTTGTATTGACCATAAAATAATGACATTCTGTTTCTGTGCaatttcattctatttctatggtactGTATTGACCCTTTTACAGGAGGATGGCTAACATGtgggtcccgtgtggctcagttggtagagcatcgcgcttgcaatgccagggttgtggggtACCCCCACGGTGCCCCAACACGACAAATGTATGTACTCagtactgtaagtcactctggataagagtgtctgctaaatgacaatgTACCGCTGACCCCCTATAACCATCCACAGTGGCACCCTGAGTGCAACCCCTCTTATGTCAGAACAATTCATCCAAATAAAGATGATCTGAATATTC

Function

GO:

id name namespace
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
K02149 ATPeV1D, ATP6M; V-type H+-transporting ATPase subunit D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU791096 lncRNA upstream 28552 30222387 ~ 30222914 (+) True G694970
TU791112 lncRNA upstream 49692 30201466 ~ 30201774 (+) True G694986
TU790869 lncRNA upstream 93209 30156435 ~ 30158257 (+) True LOC110529765
TU790870 lncRNA upstream 101174 30150005 ~ 30150292 (+) False LOC110529765
TU790905 lncRNA upstream 105999 30145266 ~ 30145467 (+) True G694819
TU791133 lncRNA downstream 6042 30269526 ~ 30272291 (+) True G695005
TU791146 lncRNA downstream 29070 30292554 ~ 30293187 (+) True G695018
TU791150 lncRNA downstream 33181 30296665 ~ 30297082 (+) True G695022
TU791149 lncRNA downstream 36566 30300050 ~ 30386665 (+) True G695021
TU791154 lncRNA downstream 38969 30302453 ~ 30383334 (+) True G695025
XM_036985254.1 mRNA upstream 8166 30227409 ~ 30243300 (+) False LOC110529768
XM_036985255.1 mRNA upstream 8166 30227409 ~ 30243300 (+) False LOC110529768
XM_021612280.2 mRNA upstream 8166 30227507 ~ 30243300 (+) False LOC110529768
XM_021612283.2 mRNA upstream 8166 30227507 ~ 30243300 (+) True LOC110529768
XM_036985253.1 mRNA upstream 60495 30175739 ~ 30190971 (+) True LOC110529767
XR_005052853.1 mRNA downstream 392137 30655621 ~ 30665458 (+) True LOC118965506
XM_021612290.2 mRNA downstream 546005 30809489 ~ 30878195 (+) False LOC110529772
XM_021612292.2 mRNA downstream 605595 30869079 ~ 30878195 (+) False LOC110529772
NM_001165090.2 mRNA downstream 780543 31044027 ~ 31047421 (+) False ndufb1
XM_036985275.1 mRNA downstream 791726 31055210 ~ 31097963 (+) True LOC110529776
TU790056 other upstream 458719 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 1313193 28930760 ~ 28938273 (+) False cdca4
TU789469 other upstream 1313193 28935489 ~ 28938273 (+) True cdca4
TU789102 other upstream 1545714 28704850 ~ 28705752 (+) True G693207
TU789022 other upstream 1693093 28495285 ~ 28558373 (+) True btbd7
TU796067 other downstream 3864109 34127593 ~ 34128301 (+) True G699605
TU797136 other downstream 5191364 35454848 ~ 35462040 (+) True LOC110529856
TU797266 other downstream 5349680 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 5640565 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 6436954 36700438 ~ 36700739 (+) True G702415

Expression Profile